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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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BD FACSymphony A1 Cell Analyzer Resource Report Resource Website |
BD FACSymphony A1 Cell Analyzer (RRID:SCR_024830) | instrument resource | Analyzer applies BD FACSymphony instrument technology to reduce background noise and increase detection sensitivity. Features low-noise electronics, high-powered lasers and tight beam spot to support immunophenotyping up to 16 colors. Enables independent analysis of large and small particles on single instrument. Optional small particle detector enables detection of small particles such as extracellular vesicles, viral particle and more. Compatible with broad portfolio of catalog and custom BD Horizon Brilliant Reagents and BD FACSDiva Software. Permits easy placement on standard lab bench with its compact format. | Flow cytometer, cell analyzer, simultaneous measurement, instrument, equipment, | Restricted | Model_Number_FACSymphony_A1 | SCR_024830 | BD FACSymphony A1 | 2025-04-10 12:18:23 | 0 | |||||||||
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3D HISTECH PANNORAMIC MIDI II scanner Resource Report Resource Website 1+ mentions |
3D HISTECH PANNORAMIC MIDI II scanner (RRID:SCR_024834) | instrument resource | Automatic digital slide scanner with 12 slide capacity in one run, fluorescence scanning, 9 physical filter cubes and 45 logical fluorescence channels. Powered by PANNORAMIC Scanner Software. Supports Carl Zeiss objectives, achieving up to 43x or 86x magnification and 0.087 µm/pixel resolution within the same instrument, along with advanced FISH scanning technique. | Automatic digital slide scanner, 12 slide capacity, fluorescence scanning, slide scanner, instrument, equipment, | Restricted | SCR_024834 | 3D HISTECH PANNORAMIC MIDI II, PANNORAMIC MIDI II | 2025-04-10 12:18:23 | 3 | ||||||||||
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American Optical 860 Sliding Microtome Resource Report Resource Website |
American Optical 860 Sliding Microtome (RRID:SCR_018434) | instrument resource | THIS REOURCE IS NO LONGER IN SERVICE. Documented on September 29,2023. Sliding microtome used for cutting hard objects such as bone, wood, frozen celloidin, and paraffin preparations. Cutting thickness is adjustable from 1 to 40 microns. | Sliding Microtome, Instrument, Equipment, American Optical, USEDit, ABRF | is listed by: USEDit | THIS REOURCE IS NO LONGER IN SERVICE | SCR_018451, SCR_019570 | https://rankinbiomed.com/wp-content/uploads/AO-860-Sliding-Microtome-Manual.pdf | SCR_018434 | 2025-04-11 11:02:32 | 0 | ||||||||
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Sutter P-2000 Laser Micropipette Puller Resource Report Resource Website 1+ mentions |
Sutter P-2000 Laser Micropipette Puller (RRID:SCR_018640) | instrument resource | Microprocessor controlled, CO2 laser based micropipette puller.Default configuration allows fabrication of micropipettes for intracellular recording, patch clamping, microinjection and microperfusion.Can store up to 100 separate programs, each consisting of up to 8 command lines. The five parameters set in each command line allow exquisite control of the micropipette taper geometry. Allows the use of wide range of glass diameters from 0.125 to 1.2 mm. | Laser Micropipette Puller, Instrument, Equipment, USEDit, ABRF | is listed by: USEDit | Commercially available | SCR_020537, SCR_020213, Model_Number_P2000 | https://www.sutter.com/manuals/P-2000_OpMan.pdf | SCR_018640 | 2025-04-15 11:38:43 | 2 | ||||||||
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Brainsight Resource Report Resource Website 50+ mentions |
Brainsight (RRID:SCR_009539) | Brainsight | resource, software resource | Neuronavigation system for use in human cognitive neuroscience (TMS, EEG, NIRS) and for non-human neurosurgical applications. | dicom, eeg, eeg, meg, electrocorticography, hardware, minc, minc2, magnetic resonance, nifti, nirs/fnir, optical imaging, optical imaging, philips par/rec, physiological recording, rendering, surface rendering, visualization, instrument, equipment | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Comercial Licence | nlx_155718 | http://www.nitrc.org/projects/brainsight | SCR_009539 | 2025-04-16 11:53:45 | 53 | |||||||
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HORNET CENTER FOR AUTONOMIC NERVE RECORDING AND STIMULATION SYSTEMS Resource Report Resource Website |
HORNET CENTER FOR AUTONOMIC NERVE RECORDING AND STIMULATION SYSTEMS (RRID:SCR_023681) | CARSS | software repository, software resource | Parylene MEA Fabrication is related to SPARC. Repository for standard fabrication procedure for Parylene C microelectrode arrays and similar devices. | Instrument, equipment, device, Parylene MEA Fabrication, microelectrode arrays, Parylene C microelectrode arrays |
is related to: SPARC Project is related to: SPARC Request |
Free, Freely available | SCR_023681 | 2025-04-16 11:57:41 | 0 | |||||||||
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MoTrak Head Motion Tracking System Resource Report Resource Website 1+ mentions |
MoTrak Head Motion Tracking System (RRID:SCR_009607) | MoTrak | resource, software resource | Designed for use in an MRI simulator, MoTrak software uses Ascension Technology?s Flock of Birds. The sensor attaches to the subject?s head and determines the position of the head in space relative to the transmitter. The sensor records angular rotations as well as positional displacements from an initially calibrated position. This information is displayed and logged by the program in real-time, allowing observation of head motion in an MRI simulator. In the simulator, the participant can simultaneously be habituated to the MRI environment, while being trained to remain still via feedback from the MoTrak system. | experiment control, hardware, microsoft, magnetic resonance, training, win32 (ms windows), windows, windows vista, windows xp, instrument, equipment | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Commercial | nlx_155815 | http://www.nitrc.org/projects/motrak | SCR_009607 | MoTrak - Head Motion Tracking System | 2025-04-16 11:53:47 | 1 | ||||||
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Luminex Amnis ImageStreamX Mk II System Resource Report Resource Website 100+ mentions |
Luminex Amnis ImageStreamX Mk II System (RRID:SCR_018589) | instrument resource | Bench top multispectral imaging flow cytometer designed for the acquisition of up to 12 channels of cellular imagery. It combines per cell information with statistical significance of sample sizes of standard flow cytometry. | Benchtop Flow Cytometer, Instrument, Equipment, imaging flow cytometer, USEDit, Luminex | is listed by: USEDit | Restricted | SCR_020244, SCR_020142, Model_Number_ImageStreamX_MkII | https://www.unthsc.edu/research/wp-content/uploads/sites/21/AMNIS-Imagestream.pdf | https://www.luminexcorp.com/imagestreamx-mk-ii/ | SCR_018589 | , Luminex ImageStream MkII Multispectral Imaging Flow Cytometer, MkII imaging flow cytometer, Luminex ImageStream MkII Flow Cytometer, Luminex Amnis ImageStream MkII Multispectral Imaging Flow Cytometer | 2025-04-17 10:55:36 | 124 | ||||||
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G protein receptor interaction feature finding instrument Resource Report Resource Website 1+ mentions |
G protein receptor interaction feature finding instrument (RRID:SCR_008343) | production service resource, analysis service resource, service resource, resource | Griffin (G-protein-receptor interacting feature finding instrument) is a high-throughput system to predict GPCR - G-protein coupling selectively with the input of GPCR sequence and ligand molecular weight. This system consists of two parts: 1) HMM section using family specific multiple alignment of GPCRs, 2) SVM section using physico-chemical feature vectors in GPCR sequence. G-protein coupled receptors (GPCR), which is composed of seven transmembrane helices, play a role as interface of signal transduction. The external stimulation for GPCR, induce the coupling with G-protein (Gi/o, Gq/11, Gs, G12/13) followed by different kinds of signal transduction to inner cell. About half of distributed drugs are intending to control this GPCR - G-protein binding system, and therefore this system is important research target for the development of effective drug. For this purpose, it is necessary to monitor, effectively and comprehensively, of the activation of G-protein by identifying ligand combined with GPCR. Since, at present, it is difficult to construct such biochemical experiment system, if the answers for experimental results can be prepared beforehand by using bioinformatics techniques, large progress is brought to G-protein related drug design. Previous works for predicting GPCR-G protein coupling selectivity are using sequence pattern search, statistical models, and HMM representations showed high sensitivity of predictions. However, there are still no works that can predict with both high sensitivity and specificity. In this work we extracted comprehensively the physico-chemical parameters of each part of ligand, GPCR and G-protein, and choose the parameters which have strong correlation with the coupling selectivity of G-protein. These parameters were put as a feature vector, used for GPCR classification based on SVM. | drug, alignment, biochemical, bioinformatic, coupling, gpcr, g-protein, helix, instrument, interface, ligand, molecular, pattern, physico-chemical, receptor interacting, sequence, signal transduction, stimulation, svm, system, technique, transmembrane, weight, instrument, equipment, hardware, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Computational Biology Research Center Core Facility |
National Institute of Advanced Industrial Science and Technology | nif-0000-25210, biotools:griffin | https://bio.tools/griffin | SCR_008343 | Griffin | 2025-04-18 10:51:36 | 3 | |||||||
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Limelight Resource Report Resource Website 10+ mentions |
Limelight (RRID:SCR_014254) | resource, time-series analysis software, data analysis software, software application, data acquisition software, software resource, data processing software | A video tracking system designed for high-throughput behavioral experiments. LimeLight can track up to 4 arenas at once and can collect images at up to 30 frames per second for one animal or up to 8 frames per second when tracking 4 arenas at once. The tracking system has 2 different hardware configurations: the 1-camera system can be used to record 1 to 4 animals at once, while for multiple animals, each one is placed in a separate arena in one quadrant of the image. The software contains productivity features such as flexible arena setup, user-defined behavior scoring, stimulus control, and various analytical functions for quantifying behavior. The program is designed for experiments such as Open Field, Plus Maze, Radial Arm Maze, Zero Maze, Novel Object Recognition, Conditioned Place Preference, and Barnes Maze. | data acquisition software, time series analysis software, data analysis software, video tracking system, behavioral experiment, high throughput, hardware, instrument, equipment | is related to: FreezeFrame | Account required | SCR_014254 | 2025-04-18 10:54:16 | 15 | ||||||||||
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DTI FiberTrak MR Clinical application Resource Report Resource Website |
DTI FiberTrak MR Clinical application (RRID:SCR_015521) | resource, data analysis software, software application, software resource, image analysis software, data processing software | Instrument and software tool used to visualize, trace, analyze, and process white matter fiber tracts of Diffusion Tensor Imaging (DTI) data in real-time. It supports pre-operative surgical planning, post-surgery evaluation, and general evaluation of fiber tracts around tumors and lesions in connection with functional areas. | white matter fiber tract, dti analysis, diffusion tensor imaging analysis, surgical preparation, surgical evaluation, hardware, instrument, equipment | Commercially available | SCR_015521 | Philips DTI FiberTrak, DTI FiberTrak | 2025-04-18 10:55:01 | 0 | ||||||||||
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Biacore 3000 Real Time Biomolecular Interaction Analyzer Resource Report Resource Website 1+ mentions |
Biacore 3000 Real Time Biomolecular Interaction Analyzer (RRID:SCR_018044) | instrument resource | Biacore 3000 processing unit is an established, label-free system for detailed studies of biomolecular interactions. The system delivers comprehensive characterization of the interaction, answers questions about the rate constants, affinity, specificity, and determines the active concentration of components. The ability to recover and transfer interaction partners directly to MALDI targets for identification and further characterization makes the system highly applicable to fast identification of unknown interactants. | ABRF, Real Time Biomolecular Interaction Analyzer, GE Healthcare, instrument, equipment | is listed by: USEDit | Restricted | SCR_019676, SCR_018577, Model_Number_Biacore 3000 | https://www.ibps.sorbonne-universite.fr/ressources/documents/1/2276 Brochure-Biacore-3000.pdf |
https://www.gelifesciences.com/en/us/shop/biacore-3000-goldseal-p-02795 | SCR_018044 | BIACORE 3000 GOLDSEAL, BiaCore 3000 Surface Plasmon Resonance | 2025-04-18 10:56:21 | 2 | ||||||
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Rodent Activity Detector project Resource Report Resource Website |
Rodent Activity Detector project (RRID:SCR_021451) | RAD | instrument resource, project portal, data or information resource, portal | Project related to tracking and recording activity in rodent home cages.Provides device that utilizes passive infrared (PIR) sensor to detect movement in cages and logs data to microSD card. Device is wireless and battery powered, and can record data for about 3 weeks on charge. | Passive infrared sensor, detect movement in cages, logs data to microSD card, wireless device, battery powered device, record data, instrument, equipment, USEDit, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1523/eneuro.0160-19.2019 | Free, Freely available | SCR_021451 | Rodent Activity Detector | 2025-04-18 10:57:15 | 0 | |||||||
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Automated Home Cage Rodent Two bottle Choice Test project Resource Report Resource Website |
Automated Home Cage Rodent Two bottle Choice Test project (RRID:SCR_021445) | instrument resource, project portal, data or information resource, portal | Project related to studies of liquid ingestive behaviors used in neuroscience to investigate reward related behavior, metabolism, and circadian biology. Provides automated home cage sipper device for monitoring liquid ingestive behavior in rodents developed by Washington University, St. Louis scientists. Homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task. | Automated home cage sipper device, Sipper, monitoring liquid, ingestive behavior, rodents, instrument, equipment, USEDit, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: SipperViz |
DOI:10.1523/eneuro.0292-19.2019 | Free, Freely available | SCR_021445 | Automated Home Cage Rodent Two bottle Choice Test | 2025-04-18 10:57:15 | 0 | ||||||||
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StepOnePlus Real-Time PCR System Resource Report Resource Website 10+ mentions |
StepOnePlus Real-Time PCR System (RRID:SCR_015805) | instrument resource, software application, data acquisition software, software resource, data processing software | Equipment and software system that is a real-time thermal cycler for intuitive data analysis of polymerase chain reactions. It comes with analysis software, instrument control software, and a LED-based 4-color optical recording feature. | image acquisition software, genotype, real time pcr, qPCR, thermal cycler, hardware, pcr, polymerase chain reaction, instrument, equipment | Commercially available, Available for purchase, Runs on Windows | SCR_015805 | StepOnePlus, StepOnePlus™ Real-Time PCR System | 2025-04-18 10:55:08 | 34 | ||||||||||
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Thermo Scientific Nanodrop 1000 Spectrophotometer Resource Report Resource Website 50+ mentions |
Thermo Scientific Nanodrop 1000 Spectrophotometer (RRID:SCR_016517) | instrument resource | Spectrophotometer for measurement and analysis of 1 ul samples with high accuracy and reproducibility. Full spectrum from 220nm to 750nm spectrophotometer utilizes patented sample retention technology that employs surface tension alone to hold sample in place. No need for cuvettes. Has capability to measure highly concentrated samples without dilution. | ABRF, spectrophotometer, nanodrop, concentration measurement, optical density, DNA, RNA, protein, nanodrop, instrument, equipment |
is listed by: USEDit works with: Thermo Scientific NanoDrop 1000 Software |
Commercially available | SCR_018035, Model_Number_Nanodrop_1000, SCR_020560 | https://www.marshallscientific.com/Nanodrop-ND-1000-Spectrophotometer-p/nd-1000.htm https://www.selectscience.net/products/nanodrop-1000-spectrophotometer/?prodID=79482#tab-2 http://tools.thermofisher.com/content/sfs/manuals/nd-1000-v3.8-users-manual-8%205x11.pdf |
SCR_016517 | NanoDrop 1000, Nanodrop ND-1000, Thermo Scientific NanoDrop 1000, NanoDrop 1000 Spectrophotometer | 2025-04-18 10:55:30 | 57 | |||||||
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Bio-Rad ZE5 Cell Analyzer Resource Report Resource Website 1+ mentions |
Bio-Rad ZE5 Cell Analyzer (RRID:SCR_019712) | instrument resource | BioRad ZE5 was formerly known as the Propel Labs YETI Cytometer with configurations to meet broad range of experimental complexities and throughput needs. Accessible for novice flow cytometry users yet flexible enough for most experienced flow cytometry professionals. | Bio Rad, Cytometer, Instrument, Equipment, Usedit | Commercially available | SCR_019713, Model_Number_ZE5, SCR_019717 | SCR_019712 | , Bio-Rad ZE5 Cell Analyzer Flow Cytometer, BioRad ZE5, Bio-Rad ZE5/Yeti Cell Analyzer Flow Cytometer | 2025-04-18 10:56:58 | 1 | |||||||||
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Automated mouse homecage two bottle choice test project Resource Report Resource Website |
Automated mouse homecage two bottle choice test project (RRID:SCR_021457) | instrument resource, project portal, data or information resource, portal | Project related to assessing preferences by mice among fluids in their homecages.Provided system includes homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task. Used for automated mouse homecage two bottle choice test. | Homecage fitted apparatus, licks automated detection, licks photobeam based detection, two bottle choice task, instrument, equipment, USEDit, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021457 | Automated mouse homecage two bottle choice test | 2025-04-18 10:57:16 | 0 | |||||||||
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Nikon SMZ1500 Zoom Stereoscope Resource Report Resource Website |
Nikon SMZ1500 Zoom Stereoscope (RRID:SCR_018605) | instrument resource | SMZ1500 stereoscopic zoom microscope is system with apochromatic objectives, zoom ratio of 15 to 1, range of magnifications from 0.75x to 11.25x for total magnifying capability of 3.75x up to 540x, and is best for in depth imaging.Zoom knob allows to zoom from 1x to 11x at 1x-intervals without interrupting observations. Other facets include high eyepoint eyepieces with built-in diopter adjustments, wide field of view, and built-in aperture diaphragm for achieving optimal depth of focus and improved photomicrography.Provides options of either low eye-level viewing tube or tilting eyepiece tube, with or without eye-level risers. Three different diascopic stands with built-in power supplies may also be utilized with instrument, or standard stand that features low profile for increased clearance. | Fluorescence Dissection Microscope, Instrument, Equipment, Nikon, USEDit, ABRF | is listed by: USEDit | Commercially available | Model_Number_SMZ1500, SCR_020314, SCR_020327 | https://www.coherent.com.au/content/media/Nikon/SMZ1500.pdf | SCR_018605 | Nikon 1500 Fluorescence Dissection Microscope | 2025-04-18 10:56:43 | 0 | |||||||
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Agilent 3100 OFFGEL Fractionator Resource Report Resource Website 1+ mentions |
Agilent 3100 OFFGEL Fractionator (RRID:SCR_018433) | instrument resource | Agilent 3100 OFFGEL Fractionator performs isoelectric focusing of proteins or peptides in immobilized pH gradient (IPG) gel strips. | Fractionator, Instrument, Equipment, Electrophoresis, Agilent, USEDit, ABRF, | is listed by: USEDit | SCR_018442, SCR_019388 | https://www.agilent.com/Library/usermanuals/Public/G3100-90001_OFFGEL_UserManual_ebook.pdf | SCR_018433 | Agilent 3100 OFFGEL Fractionator | 2025-04-18 10:56:37 | 1 |
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