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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Brainsight
 
Resource Report
Resource Website
50+ mentions
Brainsight (RRID:SCR_009539) Brainsight resource, software resource Neuronavigation system for use in human cognitive neuroscience (TMS, EEG, NIRS) and for non-human neurosurgical applications. dicom, eeg, eeg, meg, electrocorticography, hardware, minc, minc2, magnetic resonance, nifti, nirs/fnir, optical imaging, optical imaging, philips par/rec, physiological recording, rendering, surface rendering, visualization, instrument, equipment is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) Comercial Licence nlx_155718 http://www.nitrc.org/projects/brainsight SCR_009539 2026-08-02 09:05:36 62
Luminex: Amnis ImageStreamX Mk II System
 
Resource Report
Resource Website
100+ mentions
Luminex: Amnis ImageStreamX Mk II System (RRID:SCR_018589) instrument resource Bench top multispectral imaging flow cytometer designed for the acquisition of up to 12 channels of cellular imagery. It combines per cell information with statistical significance of sample sizes of standard flow cytometry. Benchtop Flow Cytometer, Instrument, Equipment, imaging flow cytometer, USEDit, Luminex is listed by: USEDit Restricted https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018589.pdf SCR_020244, SCR_020142, Model_Number_ImageStreamX_MkII https://www.unthsc.edu/research/wp-content/uploads/sites/21/AMNIS-Imagestream.pdf https://www.luminexcorp.com/imagestreamx-mk-ii/ SCR_018589 , Luminex ImageStream MkII Multispectral Imaging Flow Cytometer, MkII imaging flow cytometer, Luminex ImageStream MkII Flow Cytometer, Luminex Amnis ImageStream MkII Multispectral Imaging Flow Cytometer 2026-08-02 09:07:50 130
HORNET CENTER FOR AUTONOMIC NERVE RECORDING AND STIMULATION SYSTEMS
 
Resource Report
Resource Website
HORNET CENTER FOR AUTONOMIC NERVE RECORDING AND STIMULATION SYSTEMS (RRID:SCR_023681) CARSS software resource, software repository Parylene MEA Fabrication is related to SPARC. Repository for standard fabrication procedure for Parylene C microelectrode arrays and similar devices. Instrument, equipment, device, Parylene MEA Fabrication, microelectrode arrays, Parylene C microelectrode arrays is related to: SPARC Portal
is related to: SPARC Request
Free, Freely available SCR_023681 2026-08-02 09:08:51 0
Thermo Fisher: Applied Biosystems: GeneAmp 9700 PCR Thermocycler System
 
Resource Report
Resource Website
10+ mentions
Thermo Fisher: Applied Biosystems: GeneAmp 9700 PCR Thermocycler System (RRID:SCR_018436) instrument resource Automated PCR instrument for automated amplification of nucleic acids with Polymerase Chain Reaction. It has reaction volumes of up to 50 uL and sample temperature range of 4 to 99.9 C. Matrix Assisted Laser Desorption Ionization Time of Flight Instrument, Instrument, Equipment, Applied Biosystems, USEDit, ABRF is listed by: USEDit https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018436.pdf SCR_018448, SCR_019577, Model_Number_9700 https://assets.thermofisher.com/TFS-Assets/LSG/manuals/cms_040970.pdf SCR_018436 2026-08-03 09:37:02 13
Bio-Rad: ZE5 Cell Analyzer
 
Resource Report
Resource Website
1+ mentions
Bio-Rad: ZE5 Cell Analyzer (RRID:SCR_019712) instrument resource BioRad ZE5 was formerly known as the Propel Labs YETI Cytometer with configurations to meet broad range of experimental complexities and throughput needs. Accessible for novice flow cytometry users yet flexible enough for most experienced flow cytometry professionals. Bio Rad, Cytometer, Instrument, Equipment, Usedit Commercially available SCR_019713, Model_Number_ZE5, SCR_019717 SCR_019712 , Bio-Rad ZE5 Cell Analyzer Flow Cytometer, BioRad ZE5, Bio-Rad ZE5/Yeti Cell Analyzer Flow Cytometer 2026-08-03 09:37:13 6
GE: Biacore 3000 Real Time Biomolecular Interaction Analyzer
 
Resource Report
Resource Website
1+ mentions
GE: Biacore 3000 Real Time Biomolecular Interaction Analyzer (RRID:SCR_018044) instrument resource Biacore 3000 processing unit is an established, label-free system for detailed studies of biomolecular interactions. The system delivers comprehensive characterization of the interaction, answers questions about the rate constants, affinity, specificity, and determines the active concentration of components. The ability to recover and transfer interaction partners directly to MALDI targets for identification and further characterization makes the system highly applicable to fast identification of unknown interactants. ABRF, Real Time Biomolecular Interaction Analyzer, GE Healthcare, instrument, equipment is listed by: USEDit Restricted https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018044.pdf SCR_019676, SCR_018577, Model_Number_Biacore 3000 https://www.ibps.sorbonne-universite.fr/ressources/documents/1/2276, Brochure-Biacore-3000.pdf https://www.gelifesciences.com/en/us/shop/biacore-3000-goldseal-p-02795 SCR_018044 BIACORE 3000 GOLDSEAL, BiaCore 3000 Surface Plasmon Resonance 2026-08-03 09:37:11 4
JSU Environmental Toxicology Core Lab
 
Resource Report
Resource Website
JSU Environmental Toxicology Core Lab (RRID:SCR_000884) material resource, instrument supplier A research laboratory and facility which supports research on environmental toxicology at Jackson State University. environment, toxic, toxicology, equipment, instrument, technology is listed by: Eagle I
has parent organization: Jackson State University; Mississippi; USA
THIS RESOURCE IS NO LONGER IN SERVICE nlx_156361 SCR_000884 Jackson State University Environmental Toxicology Lab 2026-08-03 09:31:12 0
SP Scientific
 
Resource Report
Resource Website
1+ mentions
SP Scientific (RRID:SCR_017367) material resource, instrument supplier Commercial organization located in Warminster, Pennsylvania, USA, part of SP Industries, Inc. Provides VirTis, FTS Systems, Hotpack, Hull, Genevac, and PennTech scientific equipment. Manufactures freeze drying/lyophilization, centrifugal evaporation and concentration, temperature control/thermal management, glassware washers, controlled environments, vial washing and tray loading machines., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. Manufacturer, commercial, organization, component, laboratory, equipment THIS RESOURCE IS NO LONGER IN SERVICE SCR_017367 2026-08-03 09:36:36 2
Bruker Corporation
 
Resource Report
Resource Website
1+ mentions
Bruker Corporation (RRID:SCR_017365) material resource, instrument supplier Commercial organization located in Massachusetts, USA, for scientific instruments and analytical and diagnostic solutions. Bruker equipment can be used in life science molecular research, in applied and pharma applications,microscopy, nano-analysis and industrial applications. Provider of high-performance systems for cell biology, preclinical imaging, clinical phenomics and proteomics research, clinical microbiology, and for molecular pathology research. Manufacturer, corporation, commercial, instrument, analytical, diagnostic, equipment SCR_017365 2026-08-03 09:37:02 3
Nikon: Eclipse E600 Fluorescence Microscope
 
Resource Report
Resource Website
1+ mentions
Nikon: Eclipse E600 Fluorescence Microscope (RRID:SCR_018606) instrument resource Microscope equipped with CFI60 infinity optical system, providing images in all applications. Incorporates specifications adopted for CFI60 series objectives, including 60 millimeter parfocal distance, 25 millimeter thread size, and standard 22 millimeter field of view. Main components of CFI60 infinity optical system include objective, tube lens to converge light beam, and eyepiece lens to enlarge intermediate image. Fluorescence microscope that has detachable substage, 12 volt 100 watt tungsten halide lamp, filter magazine, and choice of sextuple nosepiece or sextuple DIC nosepiece.Has objectives for brightfield, darkfield, Nomarski DIC, epi fluorescence, or phase contrast techniques. Camera, Instrument, Equipment, Nikon, USEDit, ABRF Commercially available https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018606.pdf , SCR_020322, SCR_020330, Model_Number_E600, SCR_018858 https://gsecars.uchicago.edu/wp-content/uploads/2019/06/Nikon_E600-Instruction-manual.pdf SCR_018606 , Nikon Eclipse E600 Microscope 2026-08-03 09:37:18 3
Atago: PAL-10S Pocket Refractometer
 
Resource Report
Resource Website
Atago: PAL-10S Pocket Refractometer (RRID:SCR_018439) instrument resource Digital hand held pocket refractometer that measures urine specific gravity. It has measurement temperature of 10 to 35 C and sample volume of 0.3ml. Pocket Refractometer, Instrument, Equipment, Atago, USEDit, ABRF is listed by: USEDit Commercially available https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018439.pdf SCR_018449, SCR_019583, Model_Number_PAL_10S https://www.novatech-usa.com/pdf/Atago%20PAL-10S%20Refractometer%20Datasheet.pdf SCR_018439 2026-08-03 09:37:16 0
G protein receptor interaction feature finding instrument
 
Resource Report
Resource Website
10+ mentions
G protein receptor interaction feature finding instrument (RRID:SCR_008343) resource, analysis service resource, production service resource, service resource Griffin (G-protein-receptor interacting feature finding instrument) is a high-throughput system to predict GPCR - G-protein coupling selectively with the input of GPCR sequence and ligand molecular weight. This system consists of two parts: 1) HMM section using family specific multiple alignment of GPCRs, 2) SVM section using physico-chemical feature vectors in GPCR sequence. G-protein coupled receptors (GPCR), which is composed of seven transmembrane helices, play a role as interface of signal transduction. The external stimulation for GPCR, induce the coupling with G-protein (Gi/o, Gq/11, Gs, G12/13) followed by different kinds of signal transduction to inner cell. About half of distributed drugs are intending to control this GPCR - G-protein binding system, and therefore this system is important research target for the development of effective drug. For this purpose, it is necessary to monitor, effectively and comprehensively, of the activation of G-protein by identifying ligand combined with GPCR. Since, at present, it is difficult to construct such biochemical experiment system, if the answers for experimental results can be prepared beforehand by using bioinformatics techniques, large progress is brought to G-protein related drug design. Previous works for predicting GPCR-G protein coupling selectivity are using sequence pattern search, statistical models, and HMM representations showed high sensitivity of predictions. However, there are still no works that can predict with both high sensitivity and specificity. In this work we extracted comprehensively the physico-chemical parameters of each part of ligand, GPCR and G-protein, and choose the parameters which have strong correlation with the coupling selectivity of G-protein. These parameters were put as a feature vector, used for GPCR classification based on SVM. drug, alignment, biochemical, bioinformatic, coupling, gpcr, g-protein, helix, instrument, interface, ligand, molecular, pattern, physico-chemical, receptor interacting, sequence, signal transduction, stimulation, svm, system, technique, transmembrane, weight, instrument, equipment, hardware, bio.tools is listed by: bio.tools
is listed by: Debian
has parent organization: Computational Biology Research Center Core Facility
National Institute of Advanced Industrial Science and Technology nif-0000-25210, biotools:griffin https://bio.tools/griffin SCR_008343 Griffin 2026-08-04 09:42:07 19
Primate Resource Referral Service
 
Resource Report
Resource Website
1+ mentions
Primate Resource Referral Service (RRID:SCR_002828) PRRS material service resource, production service resource, service resource, database, data or information resource It provides the communications/database network needed for efficient acquisition and sharing of existing captive primates and primate-related resources by investigators and institutions both nationally and internationally. The overall goal of this service is to maximize the use of existing captive primates, thereby reducing the total number of primates needed for research, and in turn, helping to promote the conservation of primate populations in the wild. Services Provided PRRS services include 1) Referral Service, an immediate, staff-operated service designed to match investigator inquiries/requests to the available resource listings maintained in the PRRS master database; 2) CURRENT LISTINGS, a twice-monthly newsletter listing current availability of, as well as needs for, primates, tissues, equipment, and services; 3) ANNUAL RESOURCE GUIDE (ARG), an annual publication that lists subscribing suppliers of primates, laboratories, equipment, and commercial services such as transportation and quarantine facilities; and 4) Web site, an interactive site that includes the full text of CURRENT LISTINGS as well as online forms for posting resource availabilities/needs and listing updates, the current ARG, a diagram of primate taxonomy with illustrative photographs, online renewal and feedback forms, general service information, and links to other sites of interest to the primate research community. The PRRS also maintains a database of colonies, primates, and primate materials to which notices of availability and need can be referred. Services are available without charge to government-supported researchers and other scientists in the United States and abroad using primates in their work. Sponsors: The PRRS is made possible by grant RR-01240 from the National Center for Research Resources, National Institutes of Health. equipment, colony, communication, institution, investigator, network, primate, research, tissue has parent organization: University of Washington; Seattle; USA Free nif-0000-24969 http://www.wanprc.org/prrs/ SCR_002828 Primate Resource Referral Service 2026-08-04 09:40:45 3
Limelight
 
Resource Report
Resource Website
10+ mentions
Limelight (RRID:SCR_014254) resource, data processing software, data analysis software, time-series analysis software, software resource, software application, data acquisition software A video tracking system designed for high-throughput behavioral experiments. LimeLight can track up to 4 arenas at once and can collect images at up to 30 frames per second for one animal or up to 8 frames per second when tracking 4 arenas at once. The tracking system has 2 different hardware configurations: the 1-camera system can be used to record 1 to 4 animals at once, while for multiple animals, each one is placed in a separate arena in one quadrant of the image. The software contains productivity features such as flexible arena setup, user-defined behavior scoring, stimulus control, and various analytical functions for quantifying behavior. The program is designed for experiments such as Open Field, Plus Maze, Radial Arm Maze, Zero Maze, Novel Object Recognition, Conditioned Place Preference, and Barnes Maze. data acquisition software, time series analysis software, data analysis software, video tracking system, behavioral experiment, high throughput, hardware, instrument, equipment is related to: FreezeFrame Account required SCR_014254 2026-08-04 09:43:23 15
DTI FiberTrak MR Clinical application
 
Resource Report
Resource Website
DTI FiberTrak MR Clinical application (RRID:SCR_015521) resource, data processing software, data analysis software, software resource, software application, image analysis software Instrument and software tool used to visualize, trace, analyze, and process white matter fiber tracts of Diffusion Tensor Imaging (DTI) data in real-time. It supports pre-operative surgical planning, post-surgery evaluation, and general evaluation of fiber tracts around tumors and lesions in connection with functional areas. white matter fiber tract, dti analysis, diffusion tensor imaging analysis, surgical preparation, surgical evaluation, hardware, instrument, equipment Commercially available SCR_015521 Philips DTI FiberTrak, DTI FiberTrak 2026-08-04 09:43:41 0
Thermo Fisher: StepOnePlus Real-Time PCR System
 
Resource Report
Resource Website
10+ mentions
Thermo Fisher: StepOnePlus Real-Time PCR System (RRID:SCR_015805) data processing software, software resource, instrument resource, software application, data acquisition software Equipment and software system that is a real-time thermal cycler for intuitive data analysis of polymerase chain reactions. It comes with analysis software, instrument control software, and a LED-based 4-color optical recording feature. image acquisition software, genotype, real time pcr, qPCR, thermal cycler, hardware, pcr, polymerase chain reaction, instrument, equipment Commercially available, Available for purchase, Runs on Windows SCR_015805 StepOnePlus, StepOnePlus™ Real-Time PCR System 2026-08-04 09:43:45 47
Beckman Coulter: Biomek i7 Hybrid Automated Workstation
 
Resource Report
Resource Website
1+ mentions
Beckman Coulter: Biomek i7 Hybrid Automated Workstation (RRID:SCR_018094) instrument resource Liquid handling instrument designed to optimize dependability and walk-away time. Biomek i7 Hybrid with enclosure has up to 45 deck positions and includes both Multichannel and Span-8 pipette heads in enclosed work space. Liquid handling, instrument, equipment, Beckman Coulter Restricted https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_018094.pdf https://bec-techdocs-prod.s3.us-west-2.amazonaws.com/techdoc/files/ifu/en/C16028AB.pdf?AWSAccessKeyId=ASIA2KJI7HMZ33DV6WQG&Expires=1701735968&Signature=2MDYEbJhW4PJy4sgXzeeS9DyO%2B8%3D&x-amz-security-token=IQoJb3JpZ2luX2VjEP%2F%2F%2F%2F%2F%2F%2F%2F%2F%2F%2FwEaCXVzLXdlc3QtMiJGMEQCIHg6cmtDSAztedNNXtxyHC%2FQ9o4yM1SgSuLP9xeBShEqAiBzvdXKsSIHPDhKAAp89Ph3a%2F5N4WI6Q%2B2vzPWAUmArISr6AghoEAQaDDcwOTI5MjQwNzYwMyIMCupsWUjiXR86CzK6KtcCan1TNZecdLIPuEOW2TsrPrXuHumQlBikN6ce3yhHyhkat%2BXxcoT72Pefl%2FuXb8zIanpeQ2sRYiTG8XuuwjK%2B016PUCUcgWG%2FUbf4t2y12I2SLOd3YI%2FgEHK7sPoIpH2K4tkz%2FVPXgRQ8zMgYMsMSq2XxD%2F2iGkromeIhZvz1a12ertzuOrynkyfT%2FZFAWt0p2NADzT%2F8kc3WLrWByJbzv6vmPs4%2ByZPUdva6vQ6dM2F0%2F9L%2BRULmL8RsHpbOfslrhsEZY9BK%2FuoSx49fTTyKmKPs8g%2FDthw5g6r7YhAzTWk0cVagwcSRZ%2F7xdsjhGusWmQNJvFfNyz72rvaddAINSSLWsjArEdL2NUZahdlFZ%2BzbyqAC3thGwmySgtkHdEVSWmqPHvZ9o80lR9seE1mXvIVtc%2FLW2LVl76gjIxRcND2QtTZKw5CpR%2F8YtYDKySe4eBxtZux8HTD8rbmrBjqfAfP6m3jf8H5DybTLXkGz6gxd3X4fRRuizXOxQGkUA3whw298yFHAZWDEBP3LUp0cL6rJFdjvd7oEJ44qaZRNwKUtjYjk9%2FviPVWPPsZCX%2BIvmEE%2FN77lL6Dav6ASE8fjWuS3V8hnTTbo%2Filx%2F18BNJZIJ1ftJuUMhizI75F9CvvnLtweybGFoajnIOBQkN1ArufaYn%2BGCQPsVh1TOR%2F8Fw%3D%3D SCR_018094 2026-08-04 09:44:17 5
Nikon: SMZ1500 Zoom Stereoscope
 
Resource Report
Resource Website
Nikon: SMZ1500 Zoom Stereoscope (RRID:SCR_018605) instrument resource SMZ1500 stereoscopic zoom microscope is system with apochromatic objectives, zoom ratio of 15 to 1, range of magnifications from 0.75x to 11.25x for total magnifying capability of 3.75x up to 540x, and is best for in depth imaging.Zoom knob allows to zoom from 1x to 11x at 1x-intervals without interrupting observations. Other facets include high eyepoint eyepieces with built-in diopter adjustments, wide field of view, and built-in aperture diaphragm for achieving optimal depth of focus and improved photomicrography.Provides options of either low eye-level viewing tube or tilting eyepiece tube, with or without eye-level risers. Three different diascopic stands with built-in power supplies may also be utilized with instrument, or standard stand that features low profile for increased clearance. Fluorescence Dissection Microscope, Instrument, Equipment, Nikon, USEDit, ABRF Commercially available https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_018605.pdf Model_Number_SMZ1500, SCR_020314, SCR_020327 https://www.coherent.com.au/content/media/Nikon/SMZ1500.pdf SCR_018605 Nikon 1500 Fluorescence Dissection Microscope 2026-08-04 09:44:25 0
Agilent: 3100 OFFGEL Fractionator
 
Resource Report
Resource Website
1+ mentions
Agilent: 3100 OFFGEL Fractionator (RRID:SCR_018433) instrument resource Agilent 3100 OFFGEL Fractionator performs isoelectric focusing of proteins or peptides in immobilized pH gradient (IPG) gel strips. Fractionator, Instrument, Equipment, Electrophoresis, Agilent, USEDit, ABRF, is listed by: USEDit https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_018433.pdf SCR_018442, SCR_019388 https://www.agilent.com/Library/usermanuals/Public/G3100-90001_OFFGEL_UserManual_ebook.pdf SCR_018433 Agilent 3100 OFFGEL Fractionator 2026-08-04 09:44:24 1
Mount Sinai School of Medicine: In-Vivo Molecular Imaging Laboratory
 
Resource Report
Resource Website
Mount Sinai School of Medicine: In-Vivo Molecular Imaging Laboratory (RRID:SCR_001785) analysis service resource, data computation service, production service resource, service resource, biomaterial analysis service, material analysis service The In-Vivo Molecular Imaging Laboratory (IMIL) is a MSSM shared resource facility serving the research community of Mount Sinai with equipment and imaging expertise. State-of-the-art bioluminescent as well as fluorescent imaging modalities are supported for in-vivo monitoring of cellular and genetic activity. Investigators are provided with cutting edge imaging technologies as well as analysis techniques. The long-term goal is to establish a comprehensive SRF for in-vivo molecular imaging using micro-MRI, micro-PET and other modalities. IMIL houses a Xenogen IVIS-200 Series imaging system with the integrated fluorescent imaging options. Simultaneous dual reporter in-vivo imaging is possible with bioluminescence and fluorescence probes. The imaging chamber has a gas anesthesia manifold that can accommodate up to 5 mice for simultaneously image acquisition. Selectable field of views allow in-plane (X,Y) imaging resolutions of up to 60-microm. Integrated spectra filters allow for the determination of signal source depth (Z). IMIL will provide data acquisition services as well as analysis. IMIL has a dedicated imaging technologist for data acquisition. Investigators will bring their prepared animal to the lab and an IMIL imaging technologist will assist in sedating the animals and acquire imaging data. Typical imaging sessions last about an hour. Certified users who are trained in the use of the software will be able to perform their own analysis at the console. Usage of the imaging device is charged by the hour ($100/hour). Structural Imaging The IVIS-200 has the built-in capability of obtaining an image of the surface topography of the animal for 2D and 3D localization. If additional true 3D imaging data is required, micro MRI is available through the Imaging Science Laboratories (ISL). Image Analysis The IVIS-200 has an integrated image acquisition and analysis software (Living Image Software 2.50). Comprehensive data quantification is possible with this software. Raw data as well as analyzed results can be electronically transferred to the investigators. Support is also available for additional image analysis such as intermodality coregistration, 3D rendering, and group statistics. Additional software packages include MedX, SPM, Brainvoyager, Analyze, and in-house developed software. equipment, fluorescence, fluorescent, genetic, 2d, 3d, analysis, bioluminescence, bioluminescent, cellular, imaging, intermodality coregistration, in-vivo, localization, mice, micro-mri, micro-pet, molecular, probe, software, spectra, technology, xenogen ivis-200 series has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA Free, Freely available nif-0000-10299 http://www.mssm.edu/research/resources/molecular_imaging/ SCR_001785 MSSM IMIL 2026-08-04 09:40:28 0

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