Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Chinese Genome Sequence Archive Resource Report Resource Website 1000+ mentions |
Chinese Genome Sequence Archive (RRID:SCR_025826) | GSE | data or information resource, database | Public archive of raw sequence data in National Genomics Data Center as part of the China National Center for Bioinformation. GSA accepts worldwide data submissions, performs data curation and quality control for all submitted data. Provides data storage and sharing services. | Chinese National Genomics Data Center, raw sequence data, data storage and sharing, | National Key R and D Program of China ; Strategic Priority Research Program of Chinese Academy of Sciences ; Genomics Data Center Construction of Chinese Academy of Sciences ; National Natural Science Foundation of China ; International Partnership Program of the Chinese Academy of Sciences |
PMID:34400360 | r3d100012342 | https://doi.org/10.17616/R3094D | SCR_025826 | Genome Sequence Archive Family, , Genome Sequence Archive | 2026-08-10 09:38:00 | 1805 | ||||||
|
MorphoSource Resource Report Resource Website 100+ mentions |
MorphoSource (RRID:SCR_025654) | data or information resource, database | Publicly accessible 3D data repository where subject experts, educators, and general public can find, view, interact with, and download 3D and 2D media representing physical objects important to the world’s natural history, cultural heritage, and scientific collections. Media data are contributed by a community that includes museums, institutions, researchers, scholars, and other subject experts who use MorphoSource to archive data, share findings, and increase scholarly impact. Contributed media represent both biological objects such as fossils and representatives of living species, as well as artifacts and objects created by humans that are critical to our shared cultural heritage. | 3D media, 2D media, physical objects, natural history, cultural heritage, scientific collections, shared cultural heritage, | NSF ; Duke University |
Free, Freely available, | r3d100012224 | https://github.com/MorphoSource, https://doi.org/10.17616/R35Q0K | SCR_025654 | 2026-08-10 09:38:00 | 104 | ||||||||
|
CellMiner Resource Report Resource Website 100+ mentions |
CellMiner (RRID:SCR_025648) | data or information resource, database | Database and query tool designed for cancer research community to facilitate integration and study of molecular and pharmacological data for the NCI-60 cancerous cell lines. The NCI-60, panel of 60 diverse human cancer cell lines used by the Developmental Therapeutics Program of the U.S. National Cancer Institute to screen over 100,000 chemical compounds and natural products since 1990. | cancer research, integration and study of molecular and pharmacological data, NCI-60 cancerous cell lines, |
is used by: National Cancer Institute Genomics and Pharmacology Core Facility has parent organization: National Cancer Institute |
PMID:17339364 | Free, Freely available | SCR_025648 | Cell Miner, CellMiner | 2026-08-10 09:37:57 | 208 | ||||||||
|
SubtiWiki Resource Report Resource Website 1+ mentions |
SubtiWiki (RRID:SCR_025748) | data or information resource, database | Comprehensive database about Gram-positive model bacterium Bacillus subtilis. Provides curated information about its genes and proteins, as well as intricate protein–protein interactions, regulatory elements, expression data and metabolic pathways. | bacterium Bacillus subtilis, curated information, genes and proteins, intricate protein–protein interactions, regulatory elements, expression data, metabolic pathways. | PMID:34664671 | Free, Freely available | SCR_025748 | 2026-08-10 09:38:01 | 7 | ||||||||||
|
USC-SIPI Image Database Resource Report Resource Website 10+ mentions |
USC-SIPI Image Database (RRID:SCR_025683) | data or information resource, database | Collection of digitized images.Maintained primarily to support research in image processing, image analysis, and machine vision. | digitized images, | has parent organization: University of Southern California; Los Angeles; USA | Free, Freely available | SCR_025683 | 2026-08-10 09:37:58 | 21 | ||||||||||
|
Encyclopedia of RNA Interactomes Resource Report Resource Website 100+ mentions |
Encyclopedia of RNA Interactomes (RRID:SCR_025686) | data or information resource, database | Openly licensed platform to work with RNA-RNA and protein-RNA interactions with software and pipelines to deeply mining thousands of high-throughput sequencing data of RNA-RNA interactome, CLIP-seq and degradome sequencing. | platform to work with RNA-RNA and protein-RNA interactions, high-throughput sequencing data, RNA-RNA interactome, CLIP-seq, degradome sequencing, | Free, Freely available | SCR_025686 | starBase, ENCORI | 2026-08-10 09:38:00 | 389 | ||||||||||
|
EnrichDO Resource Report Resource Website 1+ mentions |
EnrichDO (RRID:SCR_025840) | EnrichDO | algorithm resource, software resource | Software R package as global weighted model for disease ontology enrichment analysis. Used for annotating and enrichment analysis with disease ontology. | disease ontology enrichment, disease ontology annotation, disease ontology, | Free, Available for download, Freely available | https://github.com/liangcheng-hrbmu/EnrichDO/ | SCR_025840 | 2026-08-10 09:38:01 | 1 | |||||||||
|
ReSpect for Phytochemicals Resource Report Resource Website 10+ mentions |
ReSpect for Phytochemicals (RRID:SCR_025688) | data or information resource, database | Collection of literature and in-house MSn spectra data for research on plant metabolomics. | Collection of literature, MSn spectra data, plant metabolomics, | has parent organization: RIKEN | RIKEN Plant Science Center ; Japan Science and Technology Agency ; Japan Advanced Plant Science Research Network ; Fuji Foundation for Protein Research |
PMID:22867903 | Restricted | SCR_025688 | RIKEN tandem mass spectral database | 2026-08-10 09:37:58 | 13 | |||||||
|
Basement Membrane Extract (BME)-free Database Resource Report Resource Website 1+ mentions |
Basement Membrane Extract (BME)-free Database (RRID:SCR_026058) | data or information resource, database | Database with products that can serve as alternative for basement membrane extracts (BMEs) for in vitro applications. BME-free database is publicly available and is part of 3Rs Research Tools Programme, which is managed and hosted by 3Rs Centre Utrecht. | BME-free database, alternative for basement membrane extracts, 3Rs Centre Utrecht, | has parent organization: Utrecht University; Utrecht; Netherlands | Restricted | SCR_026058 | 2026-08-10 09:38:02 | 1 | ||||||||||
|
Taiwan Birth Reporting System Database Resource Report Resource Website 1+ mentions |
Taiwan Birth Reporting System Database (RRID:SCR_026047) | data or information resource, database | Provides comprehensive national registry that systematically records all live births in Taiwan. It captures essential data on maternal and infant health, including maternal demographics, prenatal care, gestational age, birth weight, delivery method, and congenital anomalies. Established to facilitate public health monitoring and research, the TBRS enables studies on birth trends and outcomes, such as preterm birth and low birth weight, and provides a valuable resource for investigating the impacts of maternal health, environmental factors, and healthcare access on neonatal outcomes.TBRS database is instrumental in informing maternal and child health policies in Taiwan. | national registry, systematical recordings, live births, Taiwan | Free, Freely available | SCR_026047 | TBRS database | 2026-08-10 09:38:02 | 2 | ||||||||||
|
Taiwan National Health Insurance Database Resource Report Resource Website 10+ mentions |
Taiwan National Health Insurance Database (RRID:SCR_026048) | data or information resource, database | Provides comprehensive dataset based on National Health Insurance program, which has covered over 99% of Taiwan's population since its launch in 1995. Database includes anonymized data on outpatient and inpatient visits, prescriptions, surgeries, diagnostics, and other medical information, ensuring individual privacy protection. NHI database is extensively utilized in fields such as public health, epidemiology, drug safety, and chronic disease monitoring, providing critical insights for research on major health conditions like cancer and cardiovascular diseases. Researchers use the NHIRD for long-term follow-up studies, treatment outcome analyses, and identifying disease risk factors, making it a valuable resource for healthcare policy and medical decision-making. | National Health Insurance, Taiwan, inpatient visits, prescriptions, surgeries, diagnostics, medical information, ensuring individual privacy protection, | Free, Freely available | SCR_026048 | TNHI database | 2026-08-10 09:38:02 | 40 | ||||||||||
|
HitPredict Resource Report Resource Website |
HitPredict (RRID:SCR_026010) | data or information resource, database | Database of quality assessed protein-protein interactions in nine species. | quality assessed protein, protein interactions, nine species | PMID:20947562 | Free, Freely available | SCR_026010 | 2026-08-10 09:38:01 | 0 | ||||||||||
|
McPAS-TCR Resource Report Resource Website 1+ mentions |
McPAS-TCR (RRID:SCR_026024) | data or information resource, database | Manually curated database of T cell receptor sequences associated with various pathologic conditions including pathogen infections, cancer and autoimmunity and their respective antigens in humans and in mice. Links TCR sequences to their target antigen and/or to the organ with which they are associated and subsequent pathologies. Database can be searched by source organism, disease, tissue, T cell type, antigen sequence, MHC class, etc. | Manually curated database, T cell receptor sequences, database of T cell receptor sequences, sequences associated with pathologic conditions, pathogen infections, cancer, autoimmunity, | CORE Program of the Planning and Budgeting Committee ; Israel Science Foundation |
PMID:28481982 | Free, Freely available | SCR_026024 | 2026-08-10 09:38:02 | 5 | |||||||||
|
expanded Human Oral Microbiome Database Resource Report Resource Website 50+ mentions |
expanded Human Oral Microbiome Database (RRID:SCR_025964) | eHOMD | data or information resource, database | Provides comprehensive curated information on bacteria in human mouth and aerodigestive tract, including pharynx, nasal passages, sinuses and esophagus. eHOMD taxonomy provides provisional naming scheme for currently unnamed taxa, based on 16S rRNA sequence phylogeny, so that strain, clone and probe data from any laboratory can be directly linked to a stably named reference scheme. | curated information, bacteria in human mouth and aerodigestive tract, bacteria, human mouth, aerodigestive tract, pharynx, nasal passages, sinuses, esophagus, | NIDCR RO1 DE016937 | Free, Freely available, | SCR_025964 | 2026-08-10 09:38:00 | 70 | |||||||||
|
BirdLife International Resource Report Resource Website 10+ mentions |
BirdLife International (RRID:SCR_026243) | data or information resource, nonprofit organization | Registered charity and company limited by guarantee with mission to conserve birds, their habitats and global biodiversity, working with people toward sustainability in the use of natural resources. Registered in England. Provides bird species range map. | conserve, birds, birds habitats, global biodiversity, | SCR_026243 | 2026-08-10 09:38:04 | 29 | ||||||||||||
|
Protected Planet Resource Report Resource Website 10+ mentions |
Protected Planet (RRID:SCR_026240) | data or information resource, nonprofit organization, portal, organization portal | Provides data on protected areas and other effective area-based conservation measures, updated monthly with submissions from governments, non-governmental organizations, landowners and communities.Through Protected Planet website, users can explore World Database on Protected Areas (WDPA), World Database on OECMs, Global Database on Protected Area Management Effectiveness (GD-PAME), and associated information. | protected areas, conservation measures, World Database on Protected Areas, World Database on OECMs, Global Database on Protected Area Management Effectiveness, | SCR_026240 | 2026-08-10 09:38:04 | 45 | ||||||||||||
|
NIST Chemistry WebBook Resource Report Resource Website 50+ mentions |
NIST Chemistry WebBook (RRID:SCR_026225) | data or information resource, database | Database that provides access to organic compounds data compiled and distributed by NIST under the Standard Reference Data Program. | National Institute of Standards and Technology U.S. Department of Commerce, Standard Reference Data Program, organic compounds data, | Free, Freely available | SCR_026225 | National Institute of Standards and Technology Chemistry WebBook | 2026-08-10 09:38:04 | 76 | ||||||||||
|
CancerSEA Resource Report Resource Website 100+ mentions |
CancerSEA (RRID:SCR_026155) | data or information resource, database | Database that aims to comprehensively explore distinct functional states of cancer cells at the single-cell level. Provides functional state-associated PCG/lncRNA repertoires across all cancers, in specific cancers, and in individual cancer single-cell datasets. Provides interface for comprehensively searching, browsing, visualizing and downloading functional state activity profiles of cancer single cells and corresponding PCGs/lncRNAs expression profiles. | cancer single cells, PCGs/lncRNAs expression profiles, distinct functional states of cancer cells, single-cell level, searching, browsing, visualizing and downloading, functional state activity profiles, | National High Technology Research and Development Program of China ; National Natural Science Foundation of China |
PMID:30329142 | Free, Freely available | SCR_026155 | Cancer Single-cell State Atlas | 2026-08-10 09:38:03 | 202 | ||||||||
|
DSigDB Resource Report Resource Website 100+ mentions |
DSigDB (RRID:SCR_026202) | data or information resource, database | Online database provides collection of gene sets based on quantitative inhibition and/or drug-induced gene expression changes data of drugs and compounds. Allows users to search, view and download drugs/compounds and gene sets. | gene sets, quantitative inhibition, drug induced, gene expression changes, data, drugs, compounds, | NCI P30CA046934; NCI P50CA058187 |
PMID:25990557 | Free, Freely available, | SCR_026202 | , Drug Signatures Database, drug SIGnatures DataBase | 2026-08-10 09:38:04 | 165 | ||||||||
|
Orphelia Resource Report Resource Website 1+ mentions |
Orphelia (RRID:SCR_000119) | simulation software, software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 23,2022. A metagenomic open reading frame (ORF) finding tool for the prediction of protein coding genes in short, environmental DNA sequences with unknown phylogenetic origin. The resource is based on a two-stage machine learning approach that uses linear discriminants to extract features from the ORFs. An artificial neural network then combines the features and computes a gene probability for each ORF fragment. | metagenomic open reading frame, tool, resource, protein, genes, DNA, phyologenetic origin, machine learning, linear discriminates, artificial neural network, computation, scientific computing, fragment | is listed by: OMICtools | PMID:19429689 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01492 | SCR_000119 | 2026-08-11 09:40:06 | 2 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
