Tools   Select Another Resource Report Type

https://microbiomap.org

Microbial ecology dataset describing the composition of publicly available human microbiome samples deposited in INSDC databases (Sequence Read Archive, European Nucleotide Archive, Digital Data Bank of Japan). Genus-level read counts are available for more than 168,000 samples from around the world, with additional curated metadata for samples and projects.

Proper citation: Human Microbiome Compendium (RRID:SCR_026991) Copy   

•   Source: SciCrunch Registry

https://tp53.cancer.gov/

Database compiles various types of data and information from literature and generalist databases on human TP53 gene variations related to cancer.

Proper citation: TP53 Database (RRID:SCR_026878) Copy   

•   Source: SciCrunch Registry

https://agvd.h3abionet.org/

Database for exploring genomic variation data within African populations.

Proper citation: African Genome Variation Database (RRID:SCR_026917) Copy   

•   Source: SciCrunch Registry

https://opendata.cbs.nl/#/CBS/nl/dataset/85457NED

Database of Statistics Netherlands (CBS). Contains lifestyle data of Dutch population living in private households. The numbers can be broken down by various personal characteristics.

Proper citation: CBS StatLine - Lifestyle (RRID:SCR_027121) Copy   

•   Source: SciCrunch Registry

https://www.merative.com/real-world-evidence/real-world-data-analytics#skiptheform-marketscan

Employer-sourced medical and drugs claims database of the under-65 working population and their dependents, as well as 65+ with Medicare supplemental insurance paid by employers.

Proper citation: MarketScan by Merative (RRID:SCR_027329) Copy   

•   Source: SciCrunch Registry

https://camarades.shinyapps.io/NDC-SOLES/

Web application to systematically collect, synthesise, and display experimental evidence in genetically-modified animal models of neurodevelopmental conditions.

Proper citation: NDC-SOLES (RRID:SCR_027274) Copy   

•   Source: SciCrunch Registry

https://github.com/wenmm/EssSubgraph/tree/main

A model algorithm that integrates omics data and network data to predict essential genes.

Proper citation: EssSubgraph (RRID:SCR_027354) Copy   

•   Source: SciCrunch Registry

https://github.com/nazbuhn/Comparison-of-Deep-Learning-Approaches-for-Extreme-Low-SNR-Image-Restoration/blob/main/adaptive_stitching.py

Software algorithm for restitching overlapping image crops with intensity adjustment. Crops are intensity corrected and weight adjusted to produce uniform intensity composite image.

Proper citation: adaptive_stitching (RRID:SCR_027653) Copy   

•   Source: SciCrunch Registry

https://atlantis.bioinfolab.sns.it

Integrative database for human proteome structural and functional sites. Used for understanding role of specific residues in protein structures, complexes, and interaction networks. Integrates various structural and functional annotation layers for each residue, offering comprehensive understanding of protein functionality.

Proper citation: Atlantis (RRID:SCR_027648) Copy   

•   Source: SciCrunch Registry

http://www.genome.gov/27549169

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 30,2025. 2012 workshop to establish a Central Resource of Data from Genome Sequencing Projects. The workshop addressed the challenges to aggregating and analyzing data sets from genome sequencing studies, such as: * Data sets being generally hard to access. * Data residing in various databases. * Variant and exposure/phenotype data not being comparable across studies. Participants in the workshop discussed options for dealing with these challenges, along with their costs and tradeoffs. Videos and accompanying slides from the workshop are available. Also available as a video playlist on GenomeTV

Proper citation: NHGRI: Establishing a Central Resource of Data from Genome Sequencing Projects (RRID:SCR_003205) Copy   

•   Source: SciCrunch Registry

https://neurobagel.org/

Open source software ecosystem designed to facilitate harmonization, search, and discovery of neuroimaging study cohorts across decentralized datasets. Allows researchers to find participants across different studies based on specific clinical, demographic, and imaging criteria without needing to merge all the original data into a single central database. Provides tools to connect a local neuroimaging dataset with others in decentralized framework using linked data principles.You can contribute to Neurobagel by enhancing its tools (annotation, querying), improving documentation, adding new features/models, fixing bugs, or sharing your own data/expertise to help researchers find and harmonize brain imaging cohorts through standardized metadata and knowledge graphs.

Proper citation: Neurobagel (RRID:SCR_027847) Copy   

•   Source: SciCrunch Registry

https://www.nbdc-datahub.org

Data platform providing centralized and secure access to rich, longitudinal brain, behavioral, and genomic data from both the Adolescent Brain Cognitive Development (ABCD) and the HEALthy Brain and Child Development (HBCD) Studies. By bringing together data from both studies, the NBDC Data Hub facilitates integrative research on early life and adolescent development, helping researchers explore developmental trajectories across the lifespan.

Proper citation: NIH Brain Development Cohorts (NBDC) Data Hub (RRID:SCR_027710) Copy   

•   Source: SciCrunch Registry

http://bionlp.bcgsc.ca/cancermine/

Text-mined and routinely updated database of drivers, oncogenes and tumor suppressors in different types of cancer.

Proper citation: CancerMine (RRID:SCR_027748) Copy   

•   Source: SciCrunch Registry

https://knowledge.brain-map.org/data?filter.program.title=CONTAINS~BRAIN%20Initiative%20Cell%20Atlas%20Network&limit=25&offset=0&search=%2A&sort=species.name~ASC

Database of complete listing of data sets generated by the Brain Initiative Cell Atlas Network (BICAN). Used to find, access, and use data from the BRAIN Initiative's efforts to map brain cell types, integrating molecular, anatomical, and functional data from mouse, primate, and human brains. Its purpose is to provide a comprehensive, open-access "parts list" of the brain, accelerate neuroscience discovery, and help understand brain disorders by offering links to raw data, visualizations, and tools for a vast array of cell types and circuits.

Proper citation: Brain Initiative Cell Atlas Network Data Catalog (RRID:SCR_027884) Copy   

•   Source: SciCrunch Registry

https://www.addgene.org/collections/brain-armamentarium/

Collection of molecular genetic reagents to gain access to many different brain cell types. Provides scientists with advanced genetic tools, primarily AAV (Adeno-Associated Virus) vectors with cell-type specific "enhancers," to precisely target, map, monitor, and manipulate specific cell types and circuits in the brain and spinal cord.

Proper citation: BRAIN Armamentarium AAV Collection (RRID:SCR_027885) Copy   

•   Source: SciCrunch Registry

https://camera.niehs.nih.gov/

Interactive database and user interface providing online access to validated alternative methods for U.S. regulatory and other contexts of use. Central hub and unified resource of validated alternative methods that enhances accessibility to validation study reports, data, protocols / SOPs, and information on regulatory guidance.Users can filter searches by alternative method types, defined approaches, Test Method Endpoint, and regulatory guidance.

Proper citation: Collection of Alternative Methods for Regulatory Application (CAMERA) (RRID:SCR_027893) Copy   

•   Source: SciCrunch Registry

http://polytraits.lifewatchgreece.eu/polytraits

Database on biological traits of polychaetes (bristle worms, Polychaeta: Annelida). It covers information about morphological, behavioural, reproductive and larval characteristics of polychaete taxa which has been collected from the literature.

Proper citation: polytraits (RRID:SCR_027932) Copy   

•   Source: SciCrunch Registry

https://oncodb.org/

Database offers integrated multi-omic data for patients across 33 cancer types. It encompasses gene expression, DNA methylation, somatic mutations, proteomic profiles, and chromatin accessibility, drawing from TCGA, GTEx, and CPTAC projects. Users can compare gene expression, DNA methylation, and protein levels between tumor and normal tissues, identifying differentially expressed genes and proteins, and examining gene-to-gene correlations. Provides oncogene mutation profiles and allows for survival analysis based on gene expression and methylation, linked to clinical parameters. Facilitates exploration of multi-omic correlations, such as gene expression with DNA methylation, and their variations with mutation status. Extends its analytical capabilities to include six major oncoviruses, offering insights into their impact on gene expression, methylation, and patient survival.

Proper citation: OncoDB (RRID:SCR_028340) Copy   

•   Source: SciCrunch Registry

https://db.genomics.cn/nanopore/

Open-access structural database dedicated to the exploration, analysis, and design of protein nanopores, which serve as essential molecular gateways in biological membranes and form the basis of many advanced biosensing and sequencing technologies. This platform integrates large-scale structure-guided mining and deep learning-based modeling using AlphaFold-Multimer and AlphaFold3 to provide high-confidence multimeric nanopore structures. Each entry includes detailed information on membrane embedding, pore geometry annotation, and constriction profiling to support functional and biophysical interpretation.

Proper citation: NanoporeDB (RRID:SCR_028466) Copy   

•   Source: SciCrunch Registry

https://glycoshape.org/

Database of glycans 3D structural data and information that can be downloaded or used with Re-Glyco to rebuild glycoproteins from the RCSB PDB or EMBL-EBI AlphaFold repositories. Glycan structure database and toolbox designed to restore glycoproteins to their native and functional form.

Proper citation: GlycoShape (RRID:SCR_028443) Copy   

•   Source: SciCrunch Registry