Tools   Select Another Resource Report Type

https://www.edaq.com/ES280_PowerChrom-Software

THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 19, 2022. A software which collects, displays, and analyzes chromatographic signals. This software doesn't require any programming, and collects signals from one or two detectors. PowerChrom is supplied as part of the PowerChrom system, or separately for use with e-corder recording systems.

Proper citation: PowerChrom (RRID:SCR_014588) Copy   

•   Source: SciCrunch Registry

http://www.cbcb.umd.edu/software/metapath

A statistical package for comparing metagenomic data-sets at the pathway level. It relies on a combination of metagenomic sequence data and prior metabolic pathway knowledge, which is pulled from KEGG.

Proper citation: Metapath (RRID:SCR_014621) Copy   

•   Source: SciCrunch Registry

http://visionegg.org/

A programming library that uses standard graphics cards to produce 2D and 3D visual stimuli for vision research experiments.

Proper citation: Vision Egg (RRID:SCR_014589) Copy   

•   Source: SciCrunch Registry

http://server.molgenrug.nl/index.php/prokaryote-promoters

A webserver for the prediction of prokaryote promoter elements and regulons. DNA in FASTA or plain format serve as input. A gene table can be included with the run.

Proper citation: PePPER Prokaryote Promoter Prediction (RRID:SCR_014740) Copy   

•   Source: SciCrunch Registry

http://sea.rice.edu/sites/g/files/bxs231/f/Using%20the%20Axioskop%20Details%20Guide%20061413_0.pdf

THIS RESOURCE IS NO LONGER IN SERVCE, documented January 19, 2022. Software used to control the Zeiss Axioskop microscope.

Proper citation: Zeiss Axioskop Software (RRID:SCR_014587) Copy   

•   Source: SciCrunch Registry

http://huttenhower.sph.harvard.edu/humann

A pipeline which takes short DNA/RNA reads as inputs and produces gene and pathway summaries as outputs. The pipeline converts sequence reads into coverage and abundance tables summarizing the gene families and pathways in one or more microbial communities.

Proper citation: HUMAnN (RRID:SCR_014620) Copy   

•   Source: SciCrunch Registry

https://www.swarthmore.edu/NatSci/echeeve1/Ref/mna/MNA6.html

Software toolbox for deriving and solving circuit equations symbolically in MATLAB.

Proper citation: SCAM (RRID:SCR_014741) Copy   

•   Source: SciCrunch Registry

https://www.mathworks.com/matlabcentral/fileexchange/32398-measures-of-effect-size-toolbox?requestedDomain=www.mathworks.com

Matlab statistics toolbox allowing the computation of a wide range of measures of effect size. Four main toolbox functions cover common analysis designs, including two-sample-, oneway- and twoway- data sets as well as categorical data. Data may be repeated-measures.

Proper citation: Measures of Effect Size Toolbox (RRID:SCR_014703) Copy   

•   Source: SciCrunch Registry

http://pub.ist.ac.at/ttp/

Software used to simulate tumor progression in various stages of growth in order to study the process' dynamics. The input can be fitness landscape, mutation rate, and cell division time. The output is growth dynamics and other relevant statistics, such as expected tumor detection time and expected appearance time of surviving mutants. The tool is implemented in Java and runs on all operating systems which run a Java Virtual Machine (JVM) of version 1.7 or above.

Proper citation: Tool for Tumor Progression (RRID:SCR_014700) Copy   

•   Source: SciCrunch Registry

https://www.ada.edu.au

A consortium of leading national Australian universities which collects and preserves digital research data and makes these data available for secondary analysis. The consortium provides a data catalogue comprised of seven sub-archives: Social Science, HIstorical, Indigenous, Longitudinal, Qualitative, Crime and Justice, and International. All users can browse and search the catalogue, view study and variable documentation, and download related material. Registered users can also analyze and visualize most data online and users who have completed the relevant undertaking form(s) can download entire studies or subsets of variables. Deposited data are processed, reviewed, and published for research use.

Proper citation: Australian Data Archive (RRID:SCR_014706) Copy   

•   Source: SciCrunch Registry

http://stat.ethz.ch/R-manual/R-patched/library/stats/html/hclust.html

R documentation for hierarchical cluster analysis on a set of dissimilarities for n objects. Each object is assigned to its own cluster, which an algorithm proceeds through iteratively. Two of the most similar clusters are joined at each stage until there is a single cluster. Distances between clusters are recomputed at each stage by the Lance–Williams dissimilarity update formula according to the particular clustering method being used. Clustering methods include: Ward's minimum variance method, complete linkage method, and single linkage method.

Proper citation: Hierarchical Clustering (RRID:SCR_014673) Copy   

•   Source: SciCrunch Registry

https://github.com/jakejh/zeitzeiger

R package for regularized supervised learning on high-dimensional data from an oscillatory system. Zeitzeiger can quantify rhythmic behavior, make accurate predictions, identify major patterns and important features, and detect when the oscillator is perturbed.

Proper citation: Zeitzeiger (RRID:SCR_014791) Copy   

•   Source: SciCrunch Registry

http://stat.ethz.ch/R-manual/R-patched/library/stats/html/prcomp.html

R documentation for a function that performs a principal components analysis on a given data matrix and returns the results as an object of class prcomp.

Proper citation: Principal Components Analysis (RRID:SCR_014676) Copy   

•   Source: SciCrunch Registry

http://www.xperiment.mobi/

Mobile software application for behavioral social science experiments on an online platform. It can be used on computers, tablets, and smartphones. It is hardware independent, does not require online connectivity to perform a test, and has the option of interfacing with outside sensors, such as heart rate or weighting scales.

Proper citation: Xperiment (RRID:SCR_014712) Copy   

•   Source: SciCrunch Registry

https://imdevsoftware.wordpress.com/software/

A software suite for data wrangling, creating interactive data visualization, performing statistical analyses, cluster analyses, exploratory data analysis and visualization (such as principal component analysis), predictive modeling and biochemical pathway analysis.

Proper citation: DeviumWeb (RRID:SCR_014683) Copy   

•   Source: SciCrunch Registry

http://imaging.psu.edu/

Imaging center dedicated to fostering research in the social, behavioral, biological, engineering, and materials sciences where imaging methodologies play a central role. The SLEIC provides the Penn State research community with instrumentation, technological and substantive expertise, educational opportunities, and financial support for conducting magnetic resonance imaging (MRI) and electrophysiology (EEG, ERP) experiments.

Proper citation: Pennsylvania State University SLEIC (RRID:SCR_014922) Copy   

•   Source: SciCrunch Registry

http://www.sailing.cs.cmu.edu/main/?page_id=511

Automatic software program for profiling spatial gene expression patterns from Fly embryo ISH images. It utilizes image-based genome-scale profiling of whole-body mRNA patterns.

Proper citation: SPEX2 (RRID:SCR_014923) Copy   

•   Source: SciCrunch Registry

http://www.ccdc.cam.ac.uk/free_services/relibase_free

Web-based system for searching and analysing protein-ligand structures in the Protein Data Bank (PDB). The database provides an easily accessible web-browser interface and clear 3D structure visualisation that allows for 3D protein-ligand interaction searches, automatic superimposition and detailed analysis of related binding sites to identify protein flexibility, ligand overlap, and conserved water positions.

Proper citation: Relibase (RRID:SCR_014888) Copy   

•   Source: SciCrunch Registry

https://github.com/HussainiLab/BatchTINTV3

GUI created by the Taub Institute in order to create an end-user friendly batch processing solution to complement Axona's new command line modification of TINT. This GUI allows the user to define a directory. Within this directory it will be continuously (unless closed) searching for new files to analyze via TINT.

Proper citation: BatchTINT (RRID:SCR_014804) Copy   

•   Source: SciCrunch Registry

https://www.gvkbio.com/

Collection of databases with standalone databases, which gives opportunity for customers to integrate the data into their internal tools and databases, as well as online databases, that are available to the customers from a dedicated website where an individual can query and export the data in the selected format. The standalone database topics include medicinal chemistry, drugs and target class based compounds. The online databases are comprised of three major compilations: GVK BIO Online Structure Activity Relation Database (GOSTAR), GVK BIO Biomarker Database (GOBIOM), and Clinical Trial Outcome Database (CTOD).

Proper citation: GVKBIO databases (RRID:SCR_014893) Copy   

•   Source: SciCrunch Registry