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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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iResearch Library Resource Report Resource Website 1+ mentions |
iResearch Library (RRID:SCR_014890) | data or information resource, database, web application, software resource | Database of commercially accessible screening compounds from international chemistry suppliers. iResearchLibrary is updated on a weeky basis and offers support for creating internal screening libraries containing commercially accessible compounds, developing exploratory and targeted libraries, selecting commercially accessible compounds for SAR, lead expansion, and hit follow-up projects, and using structures for pharmacophore searching, virtual screening and other computational work. | research, database, library, chemistry, suppliers, pharmacology, screening, computation | Commercial, Freely available to National Institutes of Health (NIH) researchers | SCR_014890 | 2026-08-12 10:51:01 | 2 | |||||||||||
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Michigan Diabetes Research Center Resource Report Resource Website 1+ mentions |
Michigan Diabetes Research Center (RRID:SCR_015112) | MDRC | access service resource, core facility, service resource | Multidisciplinary unit of the University of Michigan funded by the National Institute of Diabetes and Digestive and Kidney Diseases/National Institute of Health. Promotes new discoveries and enhance scientific progress through the support of basic and clinical research related to diabetes, its complications, and related disorders. Creates environment that supports innovative research; attracts and retains early stage investigators and investigators new to diabetes research; provides core services that leverage funding and unique expertise; fosters interdisciplinary collaborations; raises awareness and interest in fundamental and clinical diabetes research at their institutions, as well as locally, regionally, and nationally. | clinical diabetes research, multidisciplinary research, endocrine and metabolic disorders, |
is listed by: NIDDK Information Network (dkNET) has organization facet: Michigan Diabetes Research Center Administrative Core Facility has organization facet: Michigan Diabetes Research Center Clinical Core Facility has organization facet: Michigan Diabetes Research Center Microscopy and Image Analysis Core Facility has organization facet: Michigan Diabetes Research Center Molecular Genetics Core Facility has organization facet: Michigan Diabetes Research Center Animal Studies Core is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK P30DK020572 | Restricted | http://diabetesresearch.med.umich.edu | SCR_015112 | Michigan Diabetes Research Center (MDRC) | 2026-08-12 10:51:18 | 4 | |||||
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Online Resource for Community Annotation of Eukaryotes Resource Report Resource Website 10+ mentions |
Online Resource for Community Annotation of Eukaryotes (RRID:SCR_014989) | OrcAE, ORCAE | data or information resource, narrative resource, wiki | Online genome annotation tool for validating and correcting gene annotations. OrcAE is community-driven and can be edited by account-holders in the research community. | genome annotation, gene validation, community driven, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Bioinformatics Gent has parent organization: Ghent University; Ghent; Belgium has parent organization: VIB; Flanders; Belgium |
PMID:23132114 | Free, Account required, The research community can contribute to this resource | biotools:orcae | https://bio.tools/orcae | SCR_014989 | Online Resource for Community Annotation of Eukaryotes (OrcAE) | 2026-08-12 10:51:16 | 17 | |||||
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MedCalc Resource Report Resource Website 10000+ mentions |
MedCalc (RRID:SCR_015044) | data processing software, data analysis software, software resource, software application | Statistical software for ROC curve analysis. MedCalc performs several statistical tests such as method comparison, method evaluation, reference intervals, and meta-analysis. | statistic, statistical analysis, roc curve, reference software | is listed by: SoftCite | Commercially available, Available for purchase, Trial available | SCR_015044 | 2026-08-12 10:51:18 | 19712 | ||||||||||
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Agilent Masshunter Quantitative Analysis software Resource Report Resource Website 100+ mentions |
Agilent Masshunter Quantitative Analysis software (RRID:SCR_015040) | data processing software, data analysis software, software resource, software application | This resource is not available. Documented on October 6, 2020.Software for the analysis of mass spectrometry data. MassHunter also works with software-specific packages to do more specialized analysis tasks. | mass spectrometry, expression profiling, ms data analysis, commercial product |
is related to: Agilent ChemStation Software is related to: Agilent MassHunter WorkStation - Qualitative Analysis for GC/MS has parent organization: Agilent Technologies |
SCR_015040 | MassHunter Software, MassHunter | 2026-08-12 10:51:18 | 180 | ||||||||||
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HCImage Resource Report Resource Website 100+ mentions |
HCImage (RRID:SCR_015041) | image analysis software, data acquisition software, software application, data processing software, image acquisition software, software resource | Image acquisition and analysis software suite for Hamamatsu imaging devices. Hamamatsu Photonics imaging system for microscopy. | Hamamatsu Photonics, image analysis system, image acquisition system, microscopy | Restricted | SCR_018818 | SCR_015041 | HCImage Image Acquisition and Analysis Software | 2026-08-12 10:51:12 | 251 | |||||||||
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Open National Cancer Institute Database Resource Report Resource Website 10+ mentions |
Open National Cancer Institute Database (RRID:SCR_014886) | data or information resource, database, web application, software resource | Public web server that provides structures, data, tools, programs and other useful information to the public for computer-aided drug design. It is the official database of the Computer-Aided Drug Design (CADD) Group. | drug design, drug testing, computer-aided, web, database, server, computer-aided drug design, cadd | Public, Available to the research communtiy | SCR_014886 | 2026-08-12 10:51:11 | 10 | |||||||||||
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SeaView Resource Report Resource Website 1000+ mentions |
SeaView (RRID:SCR_015059) | sequence analysis software, data visualization software, software application, data processing software, software resource, data analysis software | Graphical user interface for multiple sequence alignment and molecular phylogeny. SeaView also generates phylogenetic trees. | sequence alignment, molecular phylogeny, phylogenetic tree, bio.tools |
is listed by: Debian is listed by: bio.tools is listed by: OMICtools |
PMID:19854763 DOI:10.1093/molbev/msp259 |
Free, Available for download | OMICS_08908, biotools:seaview | https://bio.tools/seaview, https://sources.debian.org/src/seaview/ | SCR_015059 | 2026-08-12 10:51:13 | 1817 | |||||||
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DataAssist Resource Report Resource Website 100+ mentions |
DataAssist (RRID:SCR_014969) | data visualization software, software application, data processing software, software resource, data analysis software | Data analysis tool that utilizes the Comparative CT (ddCT) method to rapidly and accurately quantitate relative gene expression across a large number of genes and samples. Raw input from plates or arrays can be analyzed according to user-determined settings. | ddCT, QC analysis, comparative ct, gene expression, data analysis, gene, plot | has parent organization: Thermo Fisher Scientific | Free, Available for download, Account required | SCR_014969 | DataAssist Software | 2026-08-12 10:51:12 | 458 | |||||||||
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GapCloser Resource Report Resource Website 500+ mentions |
GapCloser (RRID:SCR_015026) | sequence analysis software, source code, software application, data processing software, software resource, data analysis software | Module of SOAPdenovo2 commonly used independently to close gaps in genome assemblies. | gap closure, genome assembly, sequence | is listed by: SOAP | PMID:23587118 | Free, Available for download | SCR_015026 | 2026-08-12 10:51:02 | 739 | |||||||||
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KaleidaGraph Resource Report Resource Website 1000+ mentions |
KaleidaGraph (RRID:SCR_014980) | data visualization software, software application, data processing software, software resource, data analysis software | Data analysis, graphing, and management application that allows users to import, manipulate, analyze data, and create customized plots. Plots include x-y probability, histogram, box, percentile, horizontal bar, stack bar, column, stack column, polar, and pie. Binned data can be exported to a histogram, step plot, or spike plot. KaleidaGraph works with Windows and Macintosh systems., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | custom graph, custom plot, publishable graph, publishable plot, data manipulation, curve fitting | is listed by: SoftCite | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014980 | 2026-08-12 10:51:16 | 2789 | ||||||||||
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ALD Connect Resource Report Resource Website 1+ mentions |
ALD Connect (RRID:SCR_015035) | portal, group, data or information resource, disease-related portal, topical portal | Group whose goal is to improve health outcomes for individuals with X-linked adrenoleukodystrophy by raising disease awareness, improving education, providing support for and information to patients, and performing clinical ALD research. | ald netowrk, disease network, genetic disease network, patient resource | X-linked adrenoleukodystrophy | Public | SCR_015035 | 2026-08-12 10:51:12 | 1 | ||||||||||
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ICASSO Resource Report Resource Website 10+ mentions |
ICASSO (RRID:SCR_014981) | data visualization software, software application, data processing software, algorithm resource, software resource | Software implementing a method for assessing both the algorithmic and statistical reliability of estimated independent components developed by Himburg et al in their 2004 paper. The method is based on running the ICA algorithm many times with slightly different conditions and visualizing the clustering structure of the obtained components in the signal space. In experiments with magnetoencephalographic (MEG) and functional magnetic resonance imaging (fMRI) data, the method was able to show that expected components are reliable; furthermore, it pointed out components whose interpretation was not obvious but whose reliability should incite the experimenter to investigate the underlying technical or physical phenomena. | independent component analysis, ica, ica estimate, visualization method, tight cluster |
uses: FastICA uses: MATLAB |
Academy of Finland ; Nokia Foundation |
PMID:15219593 | Available for download | SCR_014981 | Icasso 1.2, Icasso | 2026-08-12 10:51:12 | 43 | |||||||
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NaviCom Resource Report Resource Website 1+ mentions |
NaviCom (RRID:SCR_015039) | web application, data visualization software, software application, data processing software, software resource | Web application which allows users to create interactive molecular network portraits using high-throughput datasets. | python package, high throughput data visualization, molecular network |
uses: cBioPortal has parent organization: Curie Institute; Paris; France |
Open source | SCR_015039 | 2026-08-12 10:51:02 | 1 | ||||||||||
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Pituitary Network Association Resource Report Resource Website 1+ mentions |
Pituitary Network Association (RRID:SCR_015006) | PNA | portal, data or information resource, disease-related portal, topical portal, patient-support portal | International non-profit organization for patients, relatives, and physicians with pituitary tumors and disorders. | pituitary gland, patient support, clinical trial, patient advocacy organization | Pituitary tumor, Pituitary disorder | Public | SCR_015006 | Pituitary Network Association (PNA) | 2026-08-12 10:51:12 | 1 | ||||||||
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pCASL Analysis Resource Report Resource Website 1+ mentions |
pCASL Analysis (RRID:SCR_015004) | data or information resource, portal, software resource, source code | Collection of analysis scripts for pCASL (pseudo-Continuous ASL) data. | pseudo-Continuous ASL, arterial spin labeling | PMID:17826940 | SCR_015004 | 2026-08-12 10:51:16 | 5 | |||||||||||
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Ilastik Resource Report Resource Website 500+ mentions |
Ilastik (RRID:SCR_015246) | image analysis software, segmentation software, image processing software, software application, data processing software, software resource | Tool for interactive image classification, segmentation and analysis, built as a modular software framework, which currently has workflows for automated (supervised) pixel- and object-level classification, automated and semi-automated object tracking, semi-automated segmentation and object counting without detection. | machine learning, supervised learning, beginner software, image classification, image segmentation, image analysis | is related to: Webilastik | Heidelberg Collaboratory for Image Processing ; HHMI Janelia Farm Research Campus ; CellNetworks Excellence Cluster |
DOI:10.1109/ISBI.2011.5872394 DOI:10.1038/s41592-019-0582-9 |
Free, Freely available, Available for download | SCR_015246 | ilastik, Interactive Learning And Segmentation Toolkit (Ilastik), Interactive Learning And Segmentation Toolkit | 2026-08-12 10:51:06 | 755 | |||||||
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University of Washington Diabetes Research Center Resource Report Resource Website 1+ mentions |
University of Washington Diabetes Research Center (RRID:SCR_015126) | portal, service resource, data or information resource, disease-related portal, topical portal, resource, access service resource | University-affiliated center to support both basic and clinical research in diabetes and related metabolic disorders with the ultimate purpose of translating findings into opportunities to prevent these diseases and to improve clinical care and outcomes. | diabetes, metabolic disorder, clinical research |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Diabetes Research Centers has parent organization: University of Washington; Seattle; USA is parent organization of: University of Washington Diabetes Research Center Quantitative and Functional Proteomics Core Facility is parent organization of: University of Washington Diabetes Research Center Vector and Transgenic Mouse Core is parent organization of: University of Washington Diabetes Research Center Cell Function Analysis Core Facility is parent organization of: University of Washington Diabetes Research Center Human Studies Core Facility is parent organization of: University of Washington Diabetes Research Center Cellular and Molecular Imaging Core is parent organization of: University of Washington Diabetes Research Center Administrative Core has organization facet: University of Washington Diabetes Research Center Administrative Core has organization facet: University of Washington Diabetes Research Center Cell Function Analysis Core Facility has organization facet: University of Washington Diabetes Research Center Cellular and Molecular Imaging Core has organization facet: University of Washington Diabetes Research Center Human Studies Core Facility has organization facet: University of Washington Diabetes Research Center Quantitative and Functional Proteomics Core Facility has organization facet: University of Washington Diabetes Research Center Vector and Transgenic Mouse Core is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK P30DK017047 | Available to the research community | SCR_015126 | 2026-08-12 10:51:04 | 2 | ||||||||
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Atomify LAMMPS Resource Report Resource Website 1+ mentions |
Atomify LAMMPS (RRID:SCR_015240) | simulation software, software application, mobile app, software resource | Mobile simulation app for visualizing molecular interactions in liquids, solids and gases. The simulations are performed with the molecular dynamics code LAMMPS. | molecular physics, molecular simulation, molecular interaction | Open source, Available for Android phones | SCR_015240 | Atomify | 2026-08-12 10:51:06 | 6 | ||||||||||
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MeroX Resource Report Resource Website 50+ mentions |
MeroX (RRID:SCR_014956) | sequence analysis software, software application, data processing software, software resource, data analysis software | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 29,2023. Software tool for the analysis of cross-linking/mass spectrometry datasets using MS-cleavable cross-linkers. MeroX is specialized for MS/MS-cleavable cross linking reagents and identifies the specific fragmentation products of the cleavable cross links. | sequence analysis software, cross linking, mass spectrometry, MS cleavage, fragmentation, cleavable cross link, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: StavroX |
PMID:25261217 | THIS RESOURCE IS NO LONGER IN SERVICE | BioTools:MeroX, biotools:MeroX | https://bio.tools/MeroX, https://bio.tools/MeroX, https://bio.tools/MeroX | SCR_014956 | 2026-08-12 10:51:15 | 74 |
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