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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Patterns of Gene Expression in Drosophila Embryogenesis Resource Report Resource Website 50+ mentions |
Patterns of Gene Expression in Drosophila Embryogenesis (RRID:SCR_002868) | BDGP insitu | image collection, data or information resource, database, source code, software resource | Database of embryonic expression patterns using a high throughput RNA in situ hybridization of the protein-coding genes identified in the Drosophila melanogaster genome with images and controlled vocabulary annotations. At the end of production pipeline gene expression patterns are documented by taking a large number of digital images of individual embryos. The quality and identity of the captured image data are verified by independently derived microarray time-course analysis of gene expression using Affymetrix GeneChip technology. Gene expression patterns are annotated with controlled vocabulary for developmental anatomy of Drosophila embryogenesis. Image, microarray and annotation data are stored in a modified version of Gene Ontology database and the entire dataset is available on the web in browsable and searchable form or MySQL dump can be downloaded. So far, they have examined expression of 7507 genes and documented them with 111184 digital photographs. | embryo, embryogenesis, gene, anatomy, microarray, pattern, protocol, rna, gene expression, expression pattern, embryonic drosophila, in situ hybridization, annotation, est, FASEB list |
is related to: Gene Ontology has parent organization: Berkeley Drosophila Genome Project |
Howard Hughes Medical Institute ; NIH ; NIGMS R01 GM076655; NHGRI HG00750; NHGRI P41 HG00739 |
PMID:17645804 PMID:12537577 |
Free, Freely available, Available for download | nif-0000-25550, r3d100011327 | https://doi.org/10.17616/R32H0K | http://www.fruitfly.org/cgi-bin/ex/insitu.pl | SCR_002868 | BDGP Embryonic Expression Patterns | 2026-08-11 09:40:38 | 64 | |||
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EUROpean Saccharomyces Cerevisiae ARchive for Functional Analysis Resource Report Resource Website 10+ mentions |
EUROpean Saccharomyces Cerevisiae ARchive for Functional Analysis (RRID:SCR_003093) | EUROSCARF | biomaterial supply resource, organism supplier, material resource | Archive of yeast strains and plasmids that were generated during various yeast functional analysis projects. | plasmid, strain, wild type, deletion, tap fusion, degron, orf, functional analysis, yeast |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Goethe University Frankfurt am Main; Hessen; Germany |
BMBF ; European UnionROFAN I and II ; European yeast industrial platform ; federal state of Hessen |
Free, Freely available | nif-0000-30504 | http://www.uni-frankfurt.de/fb15/mikro/EUROSCARF/indexhtml | SCR_003093 | 2026-08-11 09:40:40 | 43 | ||||||
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MUGEN Mouse Database Resource Report Resource Website 1+ mentions |
MUGEN Mouse Database (RRID:SCR_003243) | MMdb | biomaterial supply resource, organism supplier, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 5, 2023. MUGEN Mouse Database (MMdb) is a virtual and fully searchable repository of murine models of immune processes and immunological diseases. MMdb is being developed within the context of the MUGEN network of Excellence, a consortium of 21 leading research institutes and universities, and currently holds all mutant mouse models that were developed within the consortium. Its primary aim is to enable information exchange between participating institutions on mouse strain characteristics and availability. More importantly, it aims to create a mouse-centric international forum on modelling of immunological diseases and pave the way to systems biology of the mouse by correlating various genotypic and phenotypic characteristics. The basic categorization of models is based on three major research application categories: * Model of Human Disease * Model of Immune Processes * Transgenic Tool Mutant strains carry detailed information on affected gene(s), mutant alleles and genetic background (DNA origin, targeted, host and backcrossing background). Each gene/transgene index also includes IDs and direct links to Ensembl (EBI��s genome browser), ArrayExpress (providing expression profiles), Eurexpress II (for embryonic expression patterns) and NCBI��s Entrez Gene database. Phenotypic description is standardized and hierarchically structured, based on MGI��s mammalian phenotypic ontology terms, but also includes relevant images and references. Since version 2.1.0 MMdb is also utilizing PATO. Availability (in the form of live mice, cryopreserved embryos or sperm, as well as ES cells) is clearly indicated, along with handling and genotyping details (in the form of documents or hyperlinks) and all relevant contact information (including EMMA and JAX hyperlinks where available). | murine model, immune process, immunological disease, mutant, mouse model, gene, phenotype, transgenic, genotype, allele, phenotype, transgene, live mouse, embryo, sperm, embryonic stem cell |
is listed by: One Mind Biospecimen Bank Listing has parent organization: BSRC Al. Fleming; East Attica; Greece |
Immunological disease | European Union ; CASIMR |
PMID:17932065 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03171 | SCR_003243 | 2026-08-11 09:40:44 | 2 | |||||
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Jackson Laboratory Cytogenetic Models Resource Resource Report Resource Website 1+ mentions |
Jackson Laboratory Cytogenetic Models Resource (RRID:SCR_003270) | biomaterial supply resource, organism supplier, material resource | Maintains and distributes chromosome aberration stocks that provide primarily mouse models for Down syndrome. The Resource currently provides models for Down syndrome research, including: Rb(6.16)24Lub x Rb(16.17)7Bnr F1 hybrids that are used to produce Chr 16 trisomy (Ts16) embryos, which have many of the fetal developmental features of DS, and; Ts(1716)65Dn, segmental trisomy mice that survive to adulthood and have many of the features of DS. The Resource also includes stocks with selected reciprocal translocations involving Chr 16 and some Chr 16 transgenic stocks. In addition, a large number of Robertsonian chromosome stocks are held as frozen embryos in the Cryopreservation Resource. Each mouse chromosome is present in at least two different Robertsonian chromosomes in these strains so that specific trisomies for each of the 19 mouse autosomes can be produced. Breeding pairs and individual mice are provided. | chromosome mutation, mouse model, down syndrome model, transgenic mouse | has parent organization: Jackson Laboratory | Down syndrome | NICHD contract N01-HD-73265 | Free, Available for download, Freely available | nif-0000-01258 | https://www.jax.org/research-and-faculty/resources/cytogenetic-and-down-syndrome-models-resource | SCR_003270 | Jackson Lab: Cytogenetic Models Resource, Cytogenetic Models Resource | 2026-08-11 09:40:50 | 1 | |||||
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Talking Glossary of Genetic Terms Resource Report Resource Website |
Talking Glossary of Genetic Terms (RRID:SCR_003215) | Talking Glossary | data or information resource, database, training material, narrative resource | Glossary of Genetic Terms to help everyone understand the terms and concepts used in genetic research. In addition to definitions, specialists in the field of genetics share their descriptions of terms, and many terms include images, animation and links to related terms. | glossary, image, genetic, gene, education |
is listed by: OMICtools has parent organization: National Human Genome Research Institute |
NHGRI | The community can contribute to this resource | nlx_156942, OMICS_01555 | SCR_003215 | NHGRI Talking Glossary, NHGRI Talking Glossary of Genetic Terms | 2026-08-11 09:40:50 | 0 | ||||||
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PIRSF Resource Report Resource Website 10+ mentions |
PIRSF (RRID:SCR_003352) | PIRSF | data or information resource, database, standard specification, narrative resource | A SuperFamily classification system, with rules for functional site and protein name, to facilitate the sensible propagation and standardization of protein annotation and the systematic detection of annotation errors. The PIRSF concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships. The PIRSF classification system is based on whole proteins rather than on the component domains; therefore, it allows annotation of generic biochemical and specific biological functions, as well as classification of proteins without well-defined domains. There are different PIRSF classification levels. The primary level is the homeomorphic family, whose members are both homologous (evolved from a common ancestor) and homeomorphic (sharing full-length sequence similarity and a common domain architecture). At a lower level are the subfamilies which are clusters representing functional specialization and/or domain architecture variation within the family. Above the homeomorphic level there may be parent superfamilies that connect distantly related families and orphan proteins based on common domains. Because proteins can belong to more than one domain superfamily, the PIRSF structure is formally a network. The FTP site provides free download for PIRSF. | protein annotation, classification, protein, superfamily, functional site, protein name, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: UniProtKB has parent organization: Protein Information Resource |
NHGRI U01-HG02712; NSF DBI-0138188; NSF ITR-0205470 |
PMID:19455212 PMID:14681371 |
Free, Freely available | biotools:pirsf, nif-0000-03294, OMICS_01697 | https://bio.tools/pirsf | http://pir.georgetown.edu/pirsf/ | SCR_003352 | PIR SuperFamily, Protein Information Resource SuperFamily | 2026-08-11 09:40:51 | 32 | |||
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Solstice Resource Report Resource Website 1+ mentions |
Solstice (RRID:SCR_003463) | Solstice | software development tool, software development environment, software resource, software application | A Web application development framework for Perl. Based on the MVC programming paradigm, it provides a sensible layout for Web applications that helps you write applications faster and with fewer mistakes. Solstice serves as the foundation for a suite of enterprise communication and collaboration tools used at the University of Washington. Many of these tools, such as the WebQ survey and quiz creation application, the UMail anonymous email form, and the CrowdControl module for managing groups of users, are available for download now. More are on the way. They will offer you rich starting points, examples, and solutions for your own applications. Solstice is designed to support large, complex applications that have a serious need for structured navigation. Its state-machine based navigation system ensures that users stay on the paths they need to follow within your Web application. With any mod_perl enabled Apache server, Solstice offers easy installation and proven scalability. Specifically, Solstice provides your application with: * a state-machine based navigation system, * integrated validation, * highly reusable and embeddable page elements, * session management, * user and group models for flexible, built-in authorization, * a development mode for realtime diagnostics, and * a focus on scalability. When you work with Solstice, you can also use Majere, a Web-based development tool that automates the creation of applications and manages their configuration. Majere frees you to focus on the more interesting parts of application development and is available along with Solstice on our Download page. Solstice provides support for RESTful development. | perl |
is listed by: Biositemaps has parent organization: University of Washington; Seattle; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-33380 | SCR_003463 | 2026-08-11 09:40:51 | 2 | ||||||||
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Alberta Geological Survey Resource Report Resource Website |
Alberta Geological Survey (RRID:SCR_003402) | AGS | data or information resource, portal, data set | Portal of geological information, including geology maps, reports, and GIS datasets, to help with the exploration, development and conservation of Alberta's resources. | geology, alberta, report, map, bibliography, publication, gas, mineral, sand, gravel, groundwater, mineral core, sample, teacher, student | is listed by: re3data.org | Free, Freely available | nlx_157758 | https://ags.aer.ca/ | SCR_003402 | 2026-08-11 09:40:44 | 0 | |||||||
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Rat Strain Ontology Resource Report Resource Website 1+ mentions |
Rat Strain Ontology (RRID:SCR_003449) | data or information resource, controlled vocabulary, ontology | Ontology that defines hierarchical display of different rat strains as derived from parental strains. Ontology Browser allows to retrieve all genes, QTLs, strains and homologs annotated to particular term. Covers all types of biological pathways including altered and disease pathways, and to capture relationships between them within hierarchical structure. Five nodes of ontology include classic metabolic, regulatory, signaling, drug and disease pathways. Ontology allows for standardized annotation of rat. Serves as vehicle to connect between genes and ontology reports, between reports and interactive pathway diagrams, between pathways that directly connect to one another within diagram or between pathways that in some fashion are globally related in pathway suites and suite networks. | rat strain, obo, gene, pathway, biological process, metabolic, regulatory, signaling, drug, disease, metabolic pathway, regulatory pathway, signaling pathway, drug pathway, disease pathway, gene |
is listed by: BioPortal is listed by: OBO has parent organization: Rat Genome Database (RGD) |
Free, Freely available | nlx_157569, nlx_157544, SCR_003473 | http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=PW:0000001, http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=RS:0000457, http://purl.bioontology.org/ontology/RS, ftp://rgd.mcw.edu/pub/ontology/rat_strain/rat_strain.obo | SCR_003449 | 2026-08-11 09:40:44 | 1 | ||||||||
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National Brain Databank Resource Report Resource Website |
National Brain Databank (RRID:SCR_003606) | National Brain Databank | data or information resource, database, data set | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 6, 2016. A publicly accessible data repository to provide neuroscience investigators with secure access to cohort collections. The Databank collects and disseminates gene expression data from microarray experiments on brain tissue samples, along with diagnostic results from postmortem studies of neurological and psychiatric disorders. All of the data that is derived from studies of the HBTRC collection is being incorporated into the National Brain Databank. This data is available to the general public, although strict precautions are undertaken to maintain the confidentiality of the brain donors and their family members. The system is designed to incorporate MIAME and MAGE-ML based microarray data sharing standards. Data from various types of studies conducted on brain tissue in the HBTRC collection will be available from studies using different technologies, such as gene expression profiling, quantitative RT-PCR, situ hybridization, and immunocytochemistry and will have the potential for providing powerful insights into the subregional and cellular distribution of genes and/or proteins in different brain regions and eventually in specific subregions and cellular subtypes. | cellular, cortex, sequence data, molecular neuroanatomy resource, gene expression, microarray, brain tissue, post-mortem, neurological disorder, mental disease, human, gene expression profiling, quantitative rt pcr, in situ hybridization, immunocytochemistry, schizophrenia, bipolar disorder, huntington's disease, parkinson's disease | has parent organization: Harvard Brain Tissue Resource Center | Schizophrenia, Huntington's disease, Parkinson's disease, bipolar disorder | NIMH ; NINDS |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00071 | SCR_003606 | National Brain Databank: Brain Tissue Gene Expression Repository | 2026-08-11 09:40:52 | 0 | |||||
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National Cell Repository for Alzheimer's Disease Resource Report Resource Website 10+ mentions |
National Cell Repository for Alzheimer's Disease (RRID:SCR_007313) | NCRAD | biomaterial supply resource, tissue bank, material resource | Cell repository for Alzheimer's disease that collects and maintains biological specimens and associated data. Its data is derived from large numbers of genetically informative, phenotypically well-characterized families with multiple individuals affected with Alzheimer's disease, as well as individuals for case-control studies. | gene, alzheimers disease, dementia, dna, late onset, memory loss, phenotypic data, research study, clinical data, plasma, serum, rna, brain tissue, family history, blood |
is listed by: One Mind Biospecimen Bank Listing is related to: DIAN - Dominantly Inherited Alzheimer Network is related to: Alzheimers Disease Genetics Consortium is related to: National Alzheimer's Coordinating Center has parent organization: Indiana University; Indiana; USA |
Alzheimer's disease, Late-onset Alzheimer's disease, Dementia, Memory loss | NIA ; NIH Blueprint for Neuroscience Research |
Public, Application required for genetic research | nif-0000-00178 | SCR_007313 | 2026-08-11 09:41:32 | 36 | ||||||
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University of Florida DNA and Tissue Bank Resource Report Resource Website |
University of Florida DNA and Tissue Bank (RRID:SCR_006581) | Alpha-1 DNA and Tissue Bank | biomaterial supply resource, tissue bank, material resource | The Alpha-1 Foundation DNA and Tissue Bank, established in 2000 by the Alpha-1 Foundation, is a repository specifically for medical information (hyperlink to data points) and tissue samples (DNA, plasma, lung/liver) for alpha-1-antitrypsin deficient individuals, their family and friends. The Bank serves the international scientific community. Currently the Bank has the largest collection of DNA in the world for Alpha-1-antitrypsin research studies. The Alpha-1 Foundation has established a Tissue Bank Advisory Committee which includes a wide representation of physicians, ethicists, attorneys, consumers as well as international experts in tissue banking. Collectively this Advisory Committee reviews requests for research. At this time the Bank has over 2400 members who have provided valuable medical and/or tissue samples. For investigators interested in obtaining tissue samples with phenotypes from the Bank, please contact the Alpha-1 Foundation or our research staff at the University of Florida. |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Florida College of Medicine; Florida; USA |
nlx_86173 | http://www.alphaone.ufl.edu/dna_tissue_bank.php | SCR_006581 | Alpha-1 Foundation DNA Tissue Bank, UF DNA Tissue Bank, Alpha-1 DNA Tissue Bank, UF DNA and Tissue Bank, Alpha-1 Foundation DNA and Tissue Bank, UF Alpha-1 Foundation DNA and Tissue Bank, UF Alpha-1 Foundation DNA Tissue Bank, University of Florida DNA Tissue Bank | 2026-08-11 09:41:25 | 0 | ||||||||
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Database of Spatially Interacting Motifs in Proteins Resource Report Resource Website |
Database of Spatially Interacting Motifs in Proteins (RRID:SCR_007735) | iMOTdb | data or information resource, database | Comprehensive collection of spatially interacting motifs in proteins. Interacting motif database lists interacting motifs that are identified for all structural entries in PDB. Conserved patterns or finger prints are identified for individual structural entries and also grouped together for reporting common motifs shared among all superfamily members. | Conserved patterns, spatially interacting motifs, finger prints, structural entries, protein | has parent organization: Tata Institute of Fundamental Research; Mumbai; India | Wellcome Trust | PMID:16381866 | Free, Freely available | nif-0000-03018, SCR_008194, nif-0000-21218 | SCR_007735 | 2026-08-11 09:41:35 | 0 | ||||||
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Hyper Cell Line Database Resource Report Resource Website |
Hyper Cell Line Database (RRID:SCR_007730) | HyperCLDB | biomaterial supply resource, tissue bank, material resource | Hypertext on cell culture availability extracted from the Cell Line Data Base of the Interlab Project. HyperCLDB includes links to records of OMIM, the Online Mendelian Inheritance in Man Catalogue, and now also links to the PubMed, database of bibliographic biomedical references, which are drawn primarily from MEDLINE and PREMEDLINE. | cell, cell line, tumor, tissue, organ, blood, bodily fluid, ascitic fluid, brain, bone marrow, cancer, transforming agent, software, bio.tools |
is listed by: One Mind Biospecimen Bank Listing is listed by: 3DVC is listed by: Debian is listed by: bio.tools is related to: ATCC is related to: Cell Line Knowledge Base has parent organization: IST National Institute for Cancer Research; Genoa; Italy |
Cancer, Etc. | PMID:18927105 | nif-0000-03004, biotools:hypercldb | https://bio.tools/hypercldb | SCR_007730 | 2026-08-11 09:41:38 | 0 | ||||||
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FaceBase Biorepository Resource Report Resource Website 1+ mentions |
FaceBase Biorepository (RRID:SCR_006001) | FaceBase Biorepository | biomaterial supply resource, tissue bank, material resource | THIS RESOURCE IS NO LONGER IN SERVICE,documented on January,18, 2022. FaceBase Biorepository is now collecting biological samples from people with cleft lip/palate and their family members. Information for Prospective Cases: Clefts of the lip and/or palate can be caused by a wide range of genetic, environmental and other factors. The FaceBase Biorepository will serve as a common source of both biological samples and information that can be made available to investigators trying to determine the underlying cause of these common birth defects. Genetic studies, in particular, will benefit from both family history information and having samples from affected individuals as well as their family members. DNA is the information containing molecules found in all the cells of our body and can be easily obtained from material such as blood or saliva samples. As part of the FaceBase Biorepository, we are requesting families to submit biological samples from specific family members as well as information from other family members that might be affected with either the same condition or a similar condition. The medical and family history information that is collected includes other relevant information such as exposure to possible environmental causes during pregnancy. The biorepository is managed by Nichole Nidey, a research study coordinator, and Jeff Murray, a pediatric clinical geneticist and researcher. They are available to speak with family members regarding questions they may have, including providing information about the biorepository and making arrangements for the collection of samples for those who wish to participate. All participation is voluntary. Your name or other personally identifiable information (name, address, etc) will be removed before information is placed in the biorepository. Summary data to show how the database itself has been used overall as well as updates on whether specific findings might have been made using this database will be available on the FaceBase website at www.facebase.org. A newsletter containing this information will also be given to families and referring clinicians so that they may discuss the specifics with the families if there appears to be information that might be relevant in a particular case. Families will also need to sign a consent form that has been approved by the Institutional Review Board at the University of Iowa. Also, any submitted samples or data can also be removed from the database at any time should the family no longer wish to participate. Investigators interested in requesting DNA samples or for more information, please contact cleftresearch (at) uiowa.edu, Nichole Nidey, nichole-nidey (at) uiowa.edu or (319) 353-4365, or Jeff Murray, jeff-murray (at) uiowa.edu. | birth defect, genetic, environment, gene |
is listed by: One Mind Biospecimen Bank Listing has parent organization: FaceBase |
Cleft lip, Cleft palate, Family member, Campomelic Dysplasia, Chromosome Abnormality, Congenital Heart Disease, Facial clefting-Tessier Type 4, Gordon Syndrome, Hemifacial Microsomia, Idiopathic Short Stature, Marshall/Stickler, Microtia, Multiple Congenital Anomaly, Neurofibromatosis, Pierre Robin, Popliteal Pterygium Syndrome, Robinow, Downs syndrome, Townes-Brock Syndrome, Van der Woude Syndrome, Popliteal Pterygium Syndrome, Wildervanck Syndrome | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151379 | SCR_006001 | 2026-08-11 09:41:20 | 1 | |||||||
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NIA Nonhuman Primate Tissue Bank Resource Report Resource Website |
NIA Nonhuman Primate Tissue Bank (RRID:SCR_007324) | NHP Tissue Bank | biomaterial supply resource, tissue bank, material resource | A repository of tissue collected from nonhuman primate (NHP) species under contractual arrangement with Wisconsin National Primate Research Center (WI NPRC). NIA''''s Nonhuman Primate Tissue Bank collects and archives tissue from necropsies performed at primate centers nationwide. The goal is to collect various tissues from aged monkeys with smaller amounts of the same tissues from young and middle-aged monkeys. Tissue will be provided as: (1) fresh frozen, stored at ����?��������??80 degrees Celsius; (2) formalin fixed; or (3) fresh frozen tissue in OCT medium.Most frozen tissues are provided in approximately 1 gram of tissue per vial. Fixed tissue is available as slides (sections) from paraffin-embedded blocks. Slides can be stained if requested. Tissue from NIA''''s Nonhuman Primate Tissue Bank is available to investigators at academic and nonprofit research institutions who are engaged in funded research on aging. The project name and funding source must accompany all orders. The NIA will not be able to ship non-human primate tissue outside of the United States or US territories. Investigators at for-profit entities are not eligible to purchase tissue from NIA''''s Nonhuman Primate Tissue Bank unless it is for a Small Business Innovation Research grant from NIA. NIA provides the health information as given by the donor site and cannot guarantee other aspects of the health status not explicitly stated in the Vital Statistics Information Sheet. Concerns about the specific health status of donor animals should be indicated on the order form. | tissue, fresh frozen, fixed block, slide, oct, frozen, fixed, paraffin-embedded block, stained, middle adult, aged, late adult, young, non-human primate, rhesus monkey |
is listed by: One Mind Biospecimen Bank Listing is related to: Wisconsin National Primate Research Center has parent organization: NIA Scientific Resources |
Aged, Middle adult, Late adult, Young, Aging | NIA ; NIH Blueprint for Neuroscience Research |
Public (US): available to investigators at academic and nonprofit research institutions engaged in funded research on aging. Investigators at for-profit entities are not eligible unless it is for a Small Business Innovation Research grant from NIA. | nif-0000-00194 | http://www.nia.nih.gov/ResearchInformation/ScientificResources/NHPTissueBankHandbook.htm | SCR_007324 | Non-human Primate Tissue Bank, Nonhuman Primate Tissue Bank Handbook, Aged Nonhuman Primate Tissue Bank, Nonhuman Primate Tissue Bank, NIA Non-Human Primate Tissue Banks, NIA Non-human Primate Tissue Bank | 2026-08-11 09:41:31 | 0 | ||||
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Cooperative Human Tissue Network Western Division at Vanderbilt University Medical Center Resource Report Resource Website |
Cooperative Human Tissue Network Western Division at Vanderbilt University Medical Center (RRID:SCR_006661) | CHTN Western Division | biomaterial supply resource, tissue bank, material resource | The Cooperative Human Tissue Network- Western Division at Vanderbilt University Medical Center is one of six institutions throughout the country funded by the National Cancer Institutes to procure and distribute remnant human tissues to biomedical researchers throughout the United States and Canada. CHTN operates through a shared networking system which allows investigators greater access to available research specimens. CHTN offers a variety of preparation and preservation techniques to ensure investigators are receiving the quality specimens needed for research. Remnant tissues are obtained from surgical resections and autopsies and are procured to the specifications of the investigator. | tissue |
lists: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB) is listed by: One Mind Biospecimen Bank Listing is related to: Vanderbilt University Medical Center; Tennessee; USA has parent organization: Vanderbilt University; Tennessee; USA |
All | NCI | Public | nlx_143710 | SCR_006661 | CHTN Western Division at VUMC, Cooperative Human Tissue Network - Western Division, VUMC Tissue Repository | 2026-08-11 09:41:26 | 0 | |||||
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Rickettsia Genome Database Resource Report Resource Website 1+ mentions |
Rickettsia Genome Database (RRID:SCR_007102) | data or information resource, database, image | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 18, 2016. Rickettsia are obligate intracellular bacteria living in arthropods. They occasionally cause diseases in humans. To understand their pathogenicity, physiologies and evolutionary mechanisms, RicBase is sequencing different species of Rickettsia. Up to now we have determined the genome sequences of R. conorii, R. felis, R. bellii, R. africae, and R. massiliae. The RicBase aims to organize the genomic data to assist followup studies of Rickettsia. This website contains information on R. conorii and R. prowazekii. A R. conorii and R. prowazekii comparative genome map is also available. Images of genome maps, dendrogram, and sequence alignment allow users to gain a visualization of the diagrams. | evolutionary, africae, alignment, arthropod, bacteria, bellii, conorii, dendrogram, disease, genome, genomic, human, intracellular, massiliae, mechanism, pathogenicity, physiology, prowazekii, rickettsia, sequence, specie, journal article, topical portal | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-20993 | SCR_007102 | RicBase | 2026-08-11 09:41:28 | 1 | |||||||||
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Subcellular Location Image Finder Resource Report Resource Website 1+ mentions |
Subcellular Location Image Finder (RRID:SCR_006723) | SLIF | data or information resource, database, image | SLIF finds fluorescence microscope images in on-line journal articles, and indexes them according to cell line, proteins visualized, and resolution. Images can be accessed via the SLIF Web database. SLIF takes on-line papers and scans them for figures that contain fluorescence microscope images (FMIs). Figures typically contain multiple FMIs, to SLIF must segment these images into individual FMIs. When the FMI images are extracted, annotations for the images (for instance, names of proteins and cell-lines) are also extracted from the accompanying caption text. Protein annotation are also used to link to external databases, such as the Gene Ontology DB. The more detailed process includes: segmentation of images into panels; panel classification, to find FMIs; segmentation of the caption, to find which portions of the caption apply to which panels; text-based entity extraction; matching of extracted entities to database entries; extraction of panel labels from text and figures; and alignment of the text segments to the panels. Extracted FMIs are processed to find subcellular location features (SLFs), and the resulting analyzed, annotated figures are stored in a database, which is accessible via SQL queries. | fluorescence, annotation, cell, journal, microscope, protein, subcellular, image, cell line, fluorescence microscope, information retrieval, data mining |
is listed by: Biositemaps has parent organization: Carnegie Mellon University; Pennsylvania; USA |
Commonwealth of Pennsylvania Tobacco Settlement Fund ; National Center for Integrative Biomedical Informatics ; NIGMS R01 GM078622; NIDA U54 DA021519 |
PMID:17990497 | nif-0000-10308 | SCR_006723 | SLIF - Subcellular Location Image Finder | 2026-08-11 09:41:23 | 1 | ||||||
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Musculoskeletal Transplant Foundation - MTF Resource Report Resource Website 1+ mentions |
Musculoskeletal Transplant Foundation - MTF (RRID:SCR_006684) | MTF | biomaterial supply resource, tissue bank, material resource | The Musculoskeletal Transplant Foundation is a non-profit service organization dedicated to providing quality allograft tissue through a commitment to excellence in education, research, recovery and care for recipients, donors and their families. We are a national consortium comprised of academic medical institutions, organ procurement organizations and tissue recovery organizations. MTF was created as a charitable organization with a mission that is dedicated to the needs of donors, donor families, patients and surgeons. We focus on respectful stewardship of the donated gift while advancing the science and practice of bone, ligament, cartilage and skin transplantation. Since our inception in 1987, MTF has recovered more than 60,000 donors and distributed more than 3 million grafts for transplantation. We also support research to expand the science of transplantation, and we encourage the efforts of our members and non-member clients to improve the understanding of donation and transplantation among the medical community and the public at large. Our policies are developed and implemented by MTF''''s Medical Board of Trustees, Donation Board of Trustees and Board of Directors, composed of physicians and recovery agency representatives who are dedicated to the mission of the Foundation. This fundamental commitment enables us to set and maintain the highest levels of safety assurance and quality control in all phases of our operations. |
is listed by: One Mind Biospecimen Bank Listing is parent organization of: International Institute for the Advancement of Medicine |
nlx_89982 | SCR_006684 | Musculoskeletal Transplant Foundation | 2026-08-11 09:41:23 | 1 |
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Here are the facets that you can filter the data by.
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