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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Autonomous Training of a Forelimb Motor Task project Resource Report Resource Website |
Autonomous Training of a Forelimb Motor Task project (RRID:SCR_021562) | data or information resource, instrument resource, portal, project portal | Portal related to individualized tracking of self directed motor learning in group housed mice performing skilled lever positioning task in home cage. Provides system for fully autonomous training of group housed mice on forelimb motor task. Task is run and controlled by Raspberry Pi microcomputer, which allows for cages to be monitored remotely through active internet connection. System was developed by University of Ottawa scientists. | Instrument, individualized tracking, self directed motor learning, group housed mice, skilled lever positioning task, home cage, forelimb motor task, OpenBehavior |
is listed by: OpenBehavior is related to: Autonomous Training of a Forelimb Motor Task has parent organization: University of Ottawa; Ontario; Canada |
DOI:10.1152/jn.00115.2017 | Free, Freely available | SCR_021562 | SciCrunch Registry | Autonomous Training of a Forelimb Motor Task | 2026-09-26 02:16:57 | 0 | ||||||||
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FlyPi Resource Report Resource Website |
FlyPi (RRID:SCR_021563) | data or information resource, instrument resource, portal, project portal | Portal provides open source and affordable microscope experimental setup device based on Raspberry Pi, Arduino microcontroller and off-the-shelf electronic components. System design is based on 3D-printed mainframe, Raspberry Pi computer, and high definition camera system as well as Arduino based optical and thermal control circuits. All functions of FlyPi can be controlled through custom written graphical user interface. | Instrument, microscope experimental system, Raspberry Pi, Arduino microcontroller, high definition camera system, Arduino, optical control circuits, thermal control circuits, OpenBehavior | is listed by: OpenBehavior | DOI:10.1371/journal.pbio.2002702 | Free, Freely available | SCR_021563 | SciCrunch Registry | 2026-09-26 02:16:57 | 0 | |||||||||
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Teensy-Based Interface project Resource Report Resource Website |
Teensy-Based Interface project (RRID:SCR_021560) | data or information resource, instrument resource, portal, project portal | Portal provides Teensy-Based Interface system. System includes Teensy 3.2 microcontroller based interface that is easily programmable, and offers high speed, precisely timed behavioral data acquisition and digital and analog outputs for controlling sCMOS cameras and other devices. Developed by Boston University scientists. | Instrument, Teensy microcontrollers, Teensy interface, sCMOS camera, camera control, behavioral experiments, OpenBehavior |
is listed by: OpenBehavior is related to: Teensy-Based Interface has parent organization: Boston University; Massachusetts; USA |
DOI:10.1016/j.jneumeth.2019.03.019 | Free, Freely available | SCR_021560 | SciCrunch Registry | Teensy-Based Interface | 2026-09-26 02:16:56 | 0 | ||||||||
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Airtrack Resource Report Resource Website 1+ mentions |
Airtrack (RRID:SCR_021561) | data or information resource, instrument resource, portal, project portal | Portal provides head fixed behavioral environment that uses lightweight physical maze floating on air table that moves around animals body under direct control of animal itself. | Instrument, head fixed, behavioral environment, lightweight physical maze, maze floating on air table, table moves around animal, real world floating environment, OpenBehavior |
is listed by: OpenBehavior has parent organization: Humboldt University of Berlin; Berlin; Germany |
DOI:10.1152/jn.00088.2016 | Free, Freely available | SCR_021561 | SciCrunch Registry | 2026-09-26 02:16:56 | 1 | |||||||||
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DIY Rodent Running Disk Resource Report Resource Website |
DIY Rodent Running Disk (RRID:SCR_021558) | data or information resource, instrument resource, portal, project portal | Portal related to Rodent Running Disk. Provided Rodent Running Disk was developed by University of California, Berkeley scientist. Acrylic disk mounted to optical encoder to achieve fast locomotion decoding. | Instrument, rodent running disk, acrylic disk, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of California at Berkeley; Berkeley; USA |
DOI:10.1016/j.neuron.2017.12.021 | Free, Freely available | SCR_021558 | SciCrunch Registry | 2026-09-26 02:16:57 | 0 | |||||||||
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SignalBuddy Resource Report Resource Website 1+ mentions |
SignalBuddy (RRID:SCR_021553) | data or information resource, instrument resource, portal, project portal | Portal related to signal generation. Provided system was developed by Columbia University scientists. System includes signal generator for scientific applications which generates digital or true analog signals (sine waves, step functions, and pulse trains) and can be controlled with intuitive serial monitor interface. | Instrument, signal generator, sine waves, step functions, pulse trains, OpenBehavior |
is listed by: OpenBehavior has parent organization: Columbia University; New York; USA |
Free, Freely available | SCR_021553 | SciCrunch Registry | 2026-09-26 02:16:57 | 1 | ||||||||||
|
Craniobot project Resource Report Resource Website |
Craniobot project (RRID:SCR_021573) | data or information resource, instrument resource, portal, project portal | Portal provides computer numerical controlled robot for cranial microsurgeries developed by University of Minnesota scientist. Included cranial microsurgery platform combines automated skull surface profiling with computer numerical controlled milling machine to perform variety of cranial microsurgical procedures on mice. | Instrument, removing skull sections, access brain, computer numerical controlled robot, cranial microsurgeries robot, OpenBehavior |
is listed by: OpenBehavior is related to: craniobot has parent organization: University of Minnesota Twin Cities; Minnesota; USA |
DOI:10.1038/s41598-018-37073-w | Free, Freely available | SCR_021573 | SciCrunch Registry | Craniobot | 2026-09-26 02:16:57 | 0 | ||||||||
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pyControl project Resource Report Resource Website |
pyControl project (RRID:SCR_021574) | data or information resource, instrument resource, portal, project portal | Portal provides system that combines open source hardware and software for control of behavioral experiments. Open source framework, combines Python scripts and Micropython microcontroller. Framework can be run through command line interface, or in user friendly graphical user interface that allows users to manage variety of devices such as nose pokes, LED drivers, stepper motor controllers and more. Data collected using this system can then be imported into Python for data analysis. | Instrument, Micropython microcontroller, Python scripts, behavioral experiment control, OpenBehavior |
is listed by: OpenBehavior is related to: pyControl |
Free, Freely available | SCR_021574 | SciCrunch Registry | pyControl system | 2026-09-26 02:16:57 | 0 | |||||||||
|
PhotometryBox Resource Report Resource Website |
PhotometryBox (RRID:SCR_021571) | data or information resource, instrument resource, portal, project portal | Portal provides open source control system for in vivo fluorescence measurements from deep brain structures developed by University of California, San Francisco scientists. Microcontroller based solution for controlling optical components in intracranial photometry system and processing resulting signal. | Instrument, fluorescence measurements, deep brain structures, optical fibers, intracranial photometry system, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of California at San Francisco; California; USA |
DOI:10.1016/j.jneumeth.2018.10.022 | Free, Freely available | SCR_021571 | SciCrunch Registry | 2026-09-26 02:16:57 | 0 | |||||||||
|
Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project Resource Report Resource Website |
Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project (RRID:SCR_021572) | HOPE | data or information resource, instrument resource, portal, project portal | Portal provides brain implant developed by MIT scientists. Implant carries 16 movable tetrodes along with two optic fibers or two injection cannulas. Designed with help of 3D CAD software, allowing modifications for various experimental needs, such as targeting different brain regions and use in other animal species (e.g., rats and non-human primates). Implant can be designed to shape of skull of individual monkeys based on pre-implantation magnetic resonance imaging, thus optimizing fit with skull surface and making recording from deep brain regions more reliable. | Instrument, neural implant, brain implant, manipulate neuronal activity, OpenBehavior |
is listed by: OpenBehavior is related to: Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
DOI:10.3389/fncir.2018.00041 | Free, Freely available | SCR_021572 | SciCrunch Registry | Pharmacology, and Electrophysiology, Hybrid-drive combining Optogenetics, Hybrid drive combining Optogenetics | 2026-09-26 02:16:58 | 0 | |||||||
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CerebraLux Resource Report Resource Website |
CerebraLux (RRID:SCR_021570) | data or information resource, instrument resource, portal, project portal | Portal provides low cost, open source, wireless probe for optogenetic stimulation. This wireless system for optogenetic stimulation was developed by UCLA scientists. Device consists of two parts. Optical component is mounted on head permanently, whereas electronic component is removable and is applied for each experiment. Device is controlled via custom GUI (built with the TkInter Python 2.7 library) which sends pulses to device via Arduino Uno. | Instrument, optogenetic stimulation, wireless system, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of California at Los Angeles; California; USA |
DOI:10.1117/1.nph.4.4.045001 | Free, Freely available | SCR_021570 | SciCrunch Registry | 2026-09-26 02:16:57 | 0 | |||||||||
|
Nose Poke Device Resource Report Resource Website |
Nose Poke Device (RRID:SCR_021568) | data or information resource, instrument resource, portal, project portal | Portal provides arduino based, 3D-printed nose poke device for rats. Includes set of instructions on how to build this device using arduino, some 3D printed parts and some off-the-shelf electronic components. | Instrument, nose poke device, device for rats, arduino, 3D printed parts, electronic components, OpenBehavior |
is listed by: OpenBehavior is related to: poke device arduino |
Free, Freely available | SCR_021568 | SciCrunch Registry | 2026-09-26 02:16:57 | 0 | ||||||||||
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Pearce Lab Syringe Pump project Resource Report Resource Website |
Pearce Lab Syringe Pump project (RRID:SCR_021566) | data or information resource, instrument resource, portal, project portal | Open source syringe pump apparatus developed by scientists from Michigan Technological University. Syringe pump is designed using freely available open source computer aided design (CAD) software and manufactured using open source RepRap 3-D printer and readily available parts. | Instrument, syringe pump apparatus, OpenBehavior |
is listed by: OpenBehavior is related to: linear actuator has parent organization: Michigan Technological University; Houghton; USA |
DOI:10.1371/journal.pone.0107216 | Free, Freely available | SCR_021566 | SciCrunch Registry | Pearce Lab Syringe Pump | 2026-09-26 02:16:57 | 0 | ||||||||
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Operant Box for Auditory Tasks project Resource Report Resource Website |
Operant Box for Auditory Tasks project (RRID:SCR_021564) | data or information resource, instrument resource, portal, project portal | Portal provides operant box designed to train small primates in auditory tasks.Device is based on computer and Arduino Mega 2560 board, named OBAT (Operant Box for Auditory Tasks), designed to present two different auditory stimuli to small primates.All schematics and software source code are available. | Instrument, operant box, train small primates, auditory tasks, OpenBehavior |
is listed by: OpenBehavior is related to: Operant Box for Auditory Tasks |
DOI:10.3758/s13428-017-0906-6 | Free, Freely available | SCR_021564 | SciCrunch Registry | Operant Box for Auditory Tasks | 2026-09-26 02:16:57 | 0 | ||||||||
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Rodent Operant Bucket project Resource Report Resource Website |
Rodent Operant Bucket project (RRID:SCR_021565) | data or information resource, instrument resource, portal, project portal | Portal for open source operant chamber, based on Arduino microcontroller platform, that can be used to train mice to respond for reward. Designed by NIDDK scientists.Apparatus contains two nose pokes, drinking well, and solenoid controlled sucrose delivery system. Chamber can run magazine training, fixed ratio and progressive ratio training schedules, and can be programmed to run more complicated behavioral paradigms. | Instrument, operant chamber, Arduino microcontroller platform, train mice, reward respond, OpenBehavior |
is listed by: OpenBehavior is related to: NIDDK- National Institute of Diabetes and Digestive and Kidney Diseases Obesity Resources is related to: Rodent Operant Bucket |
DOI:10.3758/s13428-015-0603-2 | Free, Freely available | SCR_021565 | SciCrunch Registry | Rodent Operant Bucket, ROBucket | 2026-09-26 02:16:57 | 0 | ||||||||
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OpenFeeder Resource Report Resource Website |
OpenFeeder (RRID:SCR_021552) | data or information resource, instrument resource, portal, project portal | Project related to studying reward and feeding behavior. Provides open source automatic feeding system that can be customized for food types from seeds to pellets.System integrates plexiglass tubes, Arduino Uno, motor driver, and piezo sensor to reliably deliver accurate amounts of food, and can also be built using 3D printed parts. | Instrument, automatic feeding system, customized for food types, plexiglass tubes, Arduino Uno, motor driver, piezo sensor, deliver accurate amounts of food, 3D printed parts, OpenBehavior | is listed by: OpenBehavior | DOI:10.1016/j.ohx.2016.09.001 | Free, Freely available | SCR_021552 | SciCrunch Registry | 2026-09-26 02:16:56 | 0 | |||||||||
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ToneBox Resource Report Resource Website |
ToneBox (RRID:SCR_021548) | data or information resource, instrument resource, portal, project portal | Project related to auditory behavioral task data collection.Provided high throughput operant conditioning in mouse homecage system was developed by University of Maryland,College Park, scientists.Automated system for training up to hundreds of mice in auditory behavioral task features custom Matlab GUI running on desktop which connects to Raspberry Pi to administer auditory stimuli from USB soundcard and collects auditory data as well as licking data from water spout with commercially available capacitive sensors. Parts list and build instructions are readily available from paper and associated GitHub repository. | Instrument, auditory behavioral task, automated system, training mice, auditory behavioral task, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of Maryland; Maryland; USA |
DOI:10.1523/eneuro.0121-19.2019 | Free, Freely available | SCR_021548 | SciCrunch Registry | 2026-09-26 02:16:57 | 0 | |||||||||
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Eco-HAB Resource Report Resource Website |
Eco-HAB (RRID:SCR_021588) | data or information resource, instrument resource, portal, project portal | Portal provides open source, RFID-based system for automated measurement and analysis of social preference and in-cohort sociability in mice. System was developed by Nencki Institute of Experimental Biology scientists. | Instrument, murine social behavior, automated measurement, mice social preference, mice cohort sociability, social preference analysis, OpenBehavior |
is listed by: OpenBehavior has parent organization: Nencki Institute of Experimental Biology; Warsaw; Poland |
DOI:10.7554/elife.19532 | Free, Freely available | SCR_021588 | SciCrunch Registry | 2026-09-26 02:17:17 | 0 | |||||||||
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Oculomatic Eye Tracking project Resource Report Resource Website |
Oculomatic Eye Tracking project (RRID:SCR_021465) | data or information resource, instrument resource, portal, project portal | Project related to investigate mechanisms of oculomotor behavior.Included system is provided by New York University scientists to track eye movement.System includes camera module, lens, IR-Light source, mounting solution, data acquisition device, and general purpose PC. System consists of open source software and modular hardware solution to eye tracking for use in humans and non-human primates. | High speed eye tracking, Point Gray USB3.0 camera, Oculomatic Eye Tracking system, track eye movements, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Oculomatic has parent organization: New York University; New York; USA |
DOI:10.1016/j.jneumeth.2016.06.016 | Free, Freely available | SCR_021465 | SciCrunch Registry | Oculomatic Eye Tracking | 2026-09-26 02:17:17 | 0 | ||||||||
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Moving Wall Box Resource Report Resource Website |
Moving Wall Box (RRID:SCR_021559) | data or information resource, instrument resource, portal, project portal | Portal provides Moving Wall Box system used to testing strategy task where mouse is repeatedly forced to jump over small ice by slowly moving walls whereby presence of animal is automatically sensed via balances and analyzed by microcontroller board which in turn controls movements of walls. Device provided by Max Planck Institute of Psychiatry scientist. Used for repeated assessment of fear coping strategies. | Instrument, behavioral inhibition, emotional challenging situation, OpenBehavior |
is listed by: OpenBehavior has parent organization: Max-Planck-Gesellschaft |
DOI:10.3389/fnbeh.2017.00201 | Free, Freely available | SCR_021559 | SciCrunch Registry | 2026-09-26 02:17:17 | 0 |
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