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A production service resource which allows researchers to conduct experimental procedures through the cloud. Researchers can ship samples for an experiment to Emerald, then design the experiment(s) over the web using ECL software. Emerald then conducts the experiment(s) in an automated lab as specified, organizing the data into a database in the cloud. Samples are then shipped back to the lab (within a metter of days) and results can be analyze ECL's data analysis suite. Standard experiment types include but are not limited to: analytical balance readings, light microscopy, solid phase extraction, flourescence thermodynamics, RNA extraction/cDNA prep, and Western blot. Additional experiment types may be contributed.
Proper citation: Emerald Cloud Lab (RRID:SCR_013976) Copy
http://ipython.org/notebook.html
A web application and interactive computational environment where users can combine code execution, rich text, mathematics, plots, and rich media. IPython Notebook consists of two parts, the web application and plain texts. The Ipython Notebook web application is used for interactive authoring of literate computations, in which explanatory text, mathematics, computations, and rich media output may be combined. Input and output are stored in persistent cells that may be edited in-place. The plain text documents, called notebooks, record and distribute the results of the rich computations. Saved files in the notebook can be put under version control and shared with colleagues.
Proper citation: IPython Notebook (RRID:SCR_013984) Copy
A biomaterial supply resource which collects and disseminates human heart tissue. Samples include both failing and non-failing hearts, RNA/DNA analysis, tissue staining and immunofluorescence samples.The tissue that has been flash frozen and stored at -80˚C is acquired from distinct regions of the heart such as the LV free wall, septum, and valve leaflets. Individual sample sizes are typically 100-300mg for flash frozen tissues. The DHHR also serves as a resource for assay development, target identification, and sponsored research, capable of isolating cardiomyocytes from hearts and using them for in-vitro assays such as calcium handling, enzyme activity, signalling pathways and other biochemical research activities
Proper citation: Duke Human Heart Repository (RRID:SCR_013980) Copy
A software provider which supplies researchers with software that enables remote monitoring and management of experiments. TetraScience provides software for managing lab cameras, sensors, electrical switches, adapters, and timers. Users are notified by text or email of lab proceedings and alerts.
Proper citation: TetraScience (RRID:SCR_013977) Copy
http://www.globaleventslist.elsevier.com
THIS RESOURCE IS NO LONGER IN SERVICE, documented on March, 4, 2021. A meeting resource which lists current and up-coming scientific and medical events by discipline, location, and date.
Proper citation: GlobalEventList (RRID:SCR_013960) Copy
A web application to assist in the identification of articles and research related to literature search terms. The search covers full text articles in the Europe PMC repository. Relevant papers are suggested to users based on the scientific term searched and the selection of questions, generated by the application, relevant to term searched.
Proper citation: EvidenceFinder (RRID:SCR_013764) Copy
A database and collaboration tool which allows researchers to make contacts or find collaborators within their field or from a different discipline. Users can create a profile detailing their collaboration interests, research areas, and methodologies as well as add links to external sites such as LinkedIn and Academia.edu. Piirus takes the information from users' profiles to suggest researchers with whom they may be interested in collaborating with. Users can also search for users with particular interests, expertise, or techniques.
Proper citation: Piirus (RRID:SCR_013964) Copy
http://www.edanzediting.com/journal_advisor
A training service which offers English editorial support for primarily non-native English speaking scientific researchers. Users answer a questionairre concerning their progress with their manuscript and Edanz suggests which of its services users should utilize. Services include Journal Advisor, English Editing, Expert Scientific Review, Cover Letter Development, Review Editing, Abstract Development, Response Letter Edit and Manuscript Check, Author-guided Rewriting, and Reviewer Recommendation. Edanz also offers training workshops and seminars for non-native English speakers.
Proper citation: Edanz's journal advisor (RRID:SCR_014013) Copy
A software application which provides feedback on writing, wording, and frequency of text by checking against databases of correct language. Users can highlight a chunk of text and use Writefull to see how often the specific text appears in different language databases. Writefull can also offer synonyms and suggestions for wording. Writefull is supported by numerous writing tools which include MS Word and Gmail.
Proper citation: Writefull (RRID:SCR_014006) Copy
A multi-purpose project automation tool written in Python which helps create technical documents. Dexy is a free-form literate documentation tool for writing any kind of technical document incorporating code. It provides a consistent interface to tools and scripts and keeps track of what to run, in which order, and with what parameters.
Proper citation: Dexy (RRID:SCR_013982) Copy
http://www.pgbovine.net/cde.html
A software application which automatically packages up the code, data, and environment required to deploy and run Linux programs on other machines without any installation or configuration. Users can prepend any set of Linux commands with the "cde" binary, and CDE will run them and automatically package up all files accessed during execution. A package is a directory that can be compressed and delivered to any x86-Linux machine and contains all the files and environment variables required to run the original commands. After receiving the package, the user can run those same commands from within the package on any modern x86-Linux distro.
Proper citation: CDE Tool (RRID:SCR_013981) Copy
A software repository which provides open source software and technology for visualization, computer vision, medical imaging, data publishing, and quality software process solutions. Kitware also provides services such as creating customized applications for clients, porting their open-source tools to specialized computing platforms, and supporting their open-source software tools with documentation, professional consulting services, and software training.
Proper citation: Kitware (RRID:SCR_013989) Copy
A software repository which provides open source software for machine learning. Software entries include information such as author, license, data format, and programming language. The ultimate goal of mloss.org is to create a comprehensive open source machine learning environment where open source machine learning software can compete with comercial closed source solutions.
Proper citation: machine learning open source software (RRID:SCR_013990) Copy
An ELN (electronic lab notebook) software application that allows researchers to organize and manage experiment tasks, protocols, and results. Users can divide experiments into tasks spread across weeks and keep track of multiple experiments and protocols using a variety of apps, such as timestamps and completion markers. Files can be stored in the Findings library and opened in a given application.
Proper citation: Findings App (RRID:SCR_013972) Copy
An ELN (electronic lab notebook) software application which can be used to document neuroscience projects and store metadata. LabLog is meant to constitute a laboratory's long term memory for project related information. To do this, project information is stored in a central laboratory database and can be easily retrieved by searching and filtering.
Proper citation: LabLog (RRID:SCR_013975) Copy
An ELN (electronic lab notebook) software application where researchers can record and organize their data by recording, dragging, and dropping elements. Users can utilize tools and features such as image annotation, search and filter, protocol templates, and team communication. The format of the ELN is customizable and can be rearranged at any point.
Proper citation: labfolder (RRID:SCR_013974) Copy
A portal that connects users to reserch expertise and resources within Florida's universities. Users can search for experts (principal investigators), funded research projects, centers and institutes, technology licensing opportunities, speakers, and instructional programs.
Proper citation: Florida ExpertNet (RRID:SCR_013959) Copy
http://www.researchconnection.com
THIS RESOURCE IS NO LONGER IN SERVICE. Documented June 21, 2018.
A service resource and collaboration tool which connects academically affiliated researchers to undergraduate and graduate students. Researchers can advertise their lab and open positions as well as organize and manage applicants. Students can browse labs based on university and field(s) of interest and apply directly for lab positions or jobs. Universities must officially partner with ResearchConnection to advertise labs.
Proper citation: ResearchConnection (RRID:SCR_013965) Copy
http://biospecimens.cancer.gov/default.asp
A portal to numerous programs and databases associated with the BBRB, a department of the NCI which aims to improve the collection and dissemination of high-quality biosecimens used in cancer research. The BBRB hopes to do this by improving the quality and consistency of human biospecimens and developing biorepository standards and facilitating Biospecimen Science studies that form the basis of evidence-based practices. The site provides acces to the Biospecimen Research Database, which contains peer-reviewed primary and review articles as well as standard operating procedures in human biospecimen science. The BBRB also directs programs such as the Biospecimen Pre-Analytical Variables Program and the Cancer Human Biobank (caHUB).
Proper citation: Biorepositories and Biospecimens Research Branch (RRID:SCR_013979) Copy
THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 19,2021. A model of peer review, providing independent and standardized peer review that can be accepted and shared across all types of journals and distribution systems. Rubriq can provide rigorous reviews by the same qualified peers who review for journals, but with a standardized scorecard that can be used in any publishing model. The system will enable faster, more consistent reviews, and will help match papers with the right journals. Authors, reviewers and journal editors are encouraged to sign up in the earliest phases, so you can be among the first to participate and provide feedback.
Proper citation: Rubriq (RRID:SCR_006256) Copy
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