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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Agilent: 3100 OFFGEL Fractionator
 
Resource Report
Resource Website
1+ mentions
Agilent: 3100 OFFGEL Fractionator (RRID:SCR_018433) instrument resource Agilent 3100 OFFGEL Fractionator performs isoelectric focusing of proteins or peptides in immobilized pH gradient (IPG) gel strips. Fractionator, Instrument, Equipment, Electrophoresis, Agilent, USEDit, ABRF, is listed by: USEDit https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_018433.pdf SCR_018442, SCR_019388 https://www.agilent.com/Library/usermanuals/Public/G3100-90001_OFFGEL_UserManual_ebook.pdf SCR_018433 Agilent 3100 OFFGEL Fractionator 2026-08-04 09:44:24 1
Agilent: 4200 TapeStation System
 
Resource Report
Resource Website
10+ mentions
Agilent: 4200 TapeStation System (RRID:SCR_018435) instrument resource Benchtop genetic analyzer. Electrophoresis system for DNA and RNA sample quality control. It can be used for next generation sequencing or Biobank workflow. Benchtop Genetic Analyzer, Instrument, Equipment, Agilent, USEDit, Next Generation Sequencing, ABRF, NGS is listed by: USEDit https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_018435.pdf Model_Number_4200 TapeStation, , SCR_018444, SCR_019398, SCR_019395 https://www.agilent.com/cs/library/datasheets/public/5991-6029EN.pdf SCR_018435 , Agilent 4200 Tapestation Genetic Analyzer, Agilent 4200 TapeStation 2026-08-04 09:44:21 40
PavCA project
 
Resource Report
Resource Website
PavCA project (RRID:SCR_022508) PavCA topical portal, portal, data or information resource Project related to tracking behavior. Used to identify subgroups of individuals that differentially attribute incentive value to food cue. Includes apparatus for studying Pavlovian conditioned approach behavior. Customized rat PavCA chambers are constructed based on modular devices purchased from Med-Associates. Code used to operate equipment and collect data was written using Med-Associates’ MEDSTATE programming language. This program is then loaded into Med-PC V operating program, also created by Med-Associates. Behavior, behavior analysis, Pavlovian conditioning, apparatus, Pavlovian conditioned approach, Instrument, OpenBehavior is listed by: OpenBehavior
has parent organization: University at Buffalo; New York; USA
Free, Freely available SCR_022508 Pavlovian Conditioned Approach, PavCA 2026-08-04 09:45:02 0
Timed pressure control hardware and software for delivery of air mediated distensions in animal models
 
Resource Report
Resource Website
1+ mentions
Timed pressure control hardware and software for delivery of air mediated distensions in animal models (RRID:SCR_022363) instrument resource, portal, data or information resource, project portal System uses Arduino microcontroller to control relay module that operates solenoid valve which all sit in 3D printed housing. Solenoid works in conjunction with flowmeter regulator to allow for controlled flow of pressurized air into target. Timing of distensions is controlled via either custom Python based UI, or by triggered TTL pulse.Timed pressure control hardware and software used for delivery of air mediated distensions in animal models. OpenBehavior, Instrument, behavior apparatus, delivery of air mediated distensions, animal models is listed by: OpenBehavior DOI:10.1016/J.OHX.2022.E00271 Free, Freely available https://osf.io/rs5p4 SCR_022363 Timed pressure control hardware and software for delivery of air mediated distensions in animal models project 2026-08-04 09:45:00 1
AutoStereota
 
Resource Report
Resource Website
1+ mentions
AutoStereota (RRID:SCR_022330) instrument resource, portal, data or information resource, project portal Automated surgical instrument for brain tissue aspiration.Instrument for microendoscope implantation. Utilizes robotic control of needle connected to vacuum pump to aspirate brain tissue. System consists of robotic surgical instrument built around commercially available stereotaxic instrument and open source MATLAB-based GUI for control. OpenBehavior, Instrument, brain tissue aspiration, microendoscope implantation is listed by: OpenBehavior DOI:10.1016/j.jneumeth.2018.10.013 Free, Freely available https://github.com/liang-bo/AutoStereota SCR_022330 2026-08-04 09:44:59 2
Pi-based Remote Acquisition Technology for Motion Capture project
 
Resource Report
Resource Website
Pi-based Remote Acquisition Technology for Motion Capture project (RRID:SCR_022325) PiRATeMC instrument resource, portal, data or information resource, project portal Open source video recording system for acquiring video data that is scalable, flexible, and affordable.Utilizes Raspberry Pi (RPi) miniature computer and 8-megapixel Camera Board that allows for greater manipulation of recording parameters. System may be accessed on GitHub. OpenBehavior, Instrument, behavior measurement, video analysis, realtime recording and analysis, video recording system, acquiring video data, open source recording system is listed by: OpenBehavior
is related to: Pi-based Remote Acquisition Technology for Motion Capture
DOI:10.1101/2021.07.23.453577 Free, Freely available SCR_022325 Pi-based Remote Acquisition Technology for Motion Capture 2026-08-04 09:45:04 0
Raspberry Pi based auditory stimulus generator
 
Resource Report
Resource Website
Raspberry Pi based auditory stimulus generator (RRID:SCR_022343) instrument resource, portal, data or information resource, project portal Stimulation system for auditory EEG experiments using Raspberry Pi3 B+ board, HiFiBerry audio card to enhance sound quality and trigger tone latency, and custom Python library to generate auditory stimuli. OpenBehavior, Instrument, behavior apparatus, auditory stimuli generation for EEG studies is listed by: OpenBehavior DOI:10.1523/ENEURO.0524-20.2021 Free, Freely available https://github.com/PyOpenProto/PyOpenProto/tree/e-neuro2021 SCR_022343 Raspberry Pi based auditory stimulus generator project 2026-08-04 09:45:04 0
Modular LED Displays project
 
Resource Report
Resource Website
Modular LED Displays project (RRID:SCR_022704) instrument resource, portal, data or information resource, project portal Provides customized display systems used in neuroscientific studies in insects and other small animals. System includes custom built modular LED panels and software. LED panels of various sizes can be arranged/grouped in different shapes for diverse setups. System provides millisecond refresh, precise synchronization, customizable color combinations, and varied display configurations and addresses most technical challenges of small animal vision experiments and is thoroughly documented for replicability. Instrument, OpenBehavior, fly vision, insects, behavioral neuroscience, customized display system, small animal vision experiments is listed by: OpenBehavior
has parent organization: Howard Hughes Medical Institute
DOI:10.1101/2022.08.02.502550 Free, Freely available https://reiserlab.github.io/Modular-LED-Display/, https://github.com/reiserlab/Modular-LED-Display SCR_022704 Modular LED Displays 2026-08-04 09:45:05 0
Pi USB Cam project
 
Resource Report
Resource Website
Pi USB Cam project (RRID:SCR_022834) instrument resource, portal, data or information resource, project portal Project related to video recording.Provides system for high throughput video capture. Pi USB Cam system includes low cost Raspberry Pi microcomputer, DIY electronics peripherals, freely available open-source firmware, and custom 3D-printed casings. OpenBehavior, Instrument, video capture, Raspberry Pi microcomputer, DIY electronics peripherals is listed by: OpenBehavior
has parent organization: University of Illinois at Chicago; Illinois; USA
DOI:10.1523/ENEURO.0224-22.2022 Free, Freely available SCR_022834 Pi USB Cam system, Pi USB Cam 2026-08-04 09:45:07 0
Beckman Coulter: Navios EX flow cytometer
 
Resource Report
Resource Website
1+ mentions
Beckman Coulter: Navios EX flow cytometer (RRID:SCR_023797) instrument resource Designed specifically for clinical laboratory NAVIOS EX 10-color flow cytometer delivers performance with improved sample traceability and reporting functions. Navios EX has two optional ready-to-use IVD reagent systems, the Navios Tetra System for simultaneous identification and enumeration of T, B and NK lymphocytes and the ClearLLab 10C System – the first FDA cleared and CE marked integrated leukemia and lymphoma immunophenotyping system. USEDit, instrument, equipment, flow cytometer, NAVIOS EX 10-color flow cytometer, Restricted https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_023797.pdf SCR_023797 2026-08-04 09:45:21 1
LFP Monitoring
 
Resource Report
Resource Website
LFP Monitoring (RRID:SCR_024428) instrument resource, software resource, source code Low cost platform for multianimal chronic Local Field Potential video monitoring with Graphical User Interface for seizure detection and behavioral scoring. Enables chronic monitoring of several animals simultaneously, synchronizes bilateral local field potential and video streams in real time, and parses recorded data into manageable file sizes. Hardware solution leverages Intan and Open Ephys acquisition systems and software solution is implemented in Bonsai. Data are synchronized and parsed in Bonsai, allowing for flexibility and scalability of up to 128 channels per animal. The use of Intan adapter board for LFP video recordings allows compatibility with large variety of recording devices. Custom made electrodes and cables were components for the chronic LFP recordings. Used as acquisition system for long term video neurophysiology recordings. OpenBehavior, acquisition system, long term video neurophysiology recordings, seizure detection, behavioral scoring, multianimal chronic Local Field Potential, video monitoring, LFP video recording, Graphical User Interface for seizure detection and behavioral scoring, Intan adapter board, Open Ephys acquisition system, Bonsai, custom made electrodes and cables, instrument, device, is listed by: OpenBehavior PMID:36192155 Free, Available for download, Freely available https://edspace.american.edu/openbehavior/project/lfpmonitoring/ SCR_024428 Local Field Potential video Monitoring 2026-08-04 09:45:31 0
Eco-HAB
 
Resource Report
Resource Website
Eco-HAB (RRID:SCR_021588) instrument resource, portal, data or information resource, project portal Portal provides open source, RFID-based system for automated measurement and analysis of social preference and in-cohort sociability in mice. System was developed by Nencki Institute of Experimental Biology scientists. Instrument, murine social behavior, automated measurement, mice social preference, mice cohort sociability, social preference analysis, OpenBehavior is listed by: OpenBehavior
has parent organization: Nencki Institute of Experimental Biology; Warsaw; Poland
DOI:10.7554/elife.19532 Free, Freely available SCR_021588 2026-08-04 09:44:50 0
Oculomatic Eye Tracking project
 
Resource Report
Resource Website
Oculomatic Eye Tracking project (RRID:SCR_021465) instrument resource, portal, data or information resource, project portal Project related to investigate mechanisms of oculomotor behavior.Included system is provided by New York University scientists to track eye movement.System includes camera module, lens, IR-Light source, mounting solution, data acquisition device, and general purpose PC. System consists of open source software and modular hardware solution to eye tracking for use in humans and non-human primates. High speed eye tracking, Point Gray USB3.0 camera, Oculomatic Eye Tracking system, track eye movements, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: Oculomatic
has parent organization: New York University; New York; USA
DOI:10.1016/j.jneumeth.2016.06.016 Free, Freely available SCR_021465 Oculomatic Eye Tracking 2026-08-04 09:44:49 0
Moving Wall Box
 
Resource Report
Resource Website
Moving Wall Box (RRID:SCR_021559) instrument resource, portal, data or information resource, project portal Portal provides Moving Wall Box system used to testing strategy task where mouse is repeatedly forced to jump over small ice by slowly moving walls whereby presence of animal is automatically sensed via balances and analyzed by microcontroller board which in turn controls movements of walls. Device provided by Max Planck Institute of Psychiatry scientist. Used for repeated assessment of fear coping strategies. Instrument, behavioral inhibition, emotional challenging situation, OpenBehavior is listed by: OpenBehavior
has parent organization: Max-Planck-Gesellschaft
DOI:10.3389/fnbeh.2017.00201 Free, Freely available SCR_021559 2026-08-04 09:44:51 0
3DOC
 
Resource Report
Resource Website
3DOC (RRID:SCR_021547) instrument resource, portal, data or information resource, project portal Project related to animals learned perform action in order to achieve reward. Fully 3D printable chamber able to perform operant conditioning using off-the-shelf, low-cost optical and electronic components, that can be reproduced rigorously in any laboratory equipped with 3D printer. Instrument, operant conditioning, 3D printable chamber, OpenBehavior is listed by: OpenBehavior DOI:10.1523/eneuro.0502-19.2020 Commercially available SCR_021547 2026-08-04 09:44:50 0
Attys project
 
Resource Report
Resource Website
Attys project (RRID:SCR_021461) instrument resource, portal, data or information resource, project portal Portal related to biomedical signals.Provides wearable data acquisition device with special focus on biomedical signals such as heart activity (ECG), muscle activity (EMG) and brain activity (EEG).Open source high precision bluetooth data acquisition device. Biomedical signals acquire, heart activity data acquire, muscle activity data acquire, brain activity data acquire, data acquisition device, bluetooth data acquisition device, OpenBehavior, Instrument is listed by: OpenBehavior Free, Freely available SCR_021461 Attys 2026-08-04 09:44:49 0
AutonoMouse project
 
Resource Report
Resource Website
AutonoMouse project (RRID:SCR_021462) instrument resource, portal, data or information resource, project portal Project related to self initiated conditioning and behavior tracking in mice. Provides automated system that can track large numbers (over 25) of socially housed mice through implanted RFID chips on mice. With RFID trackers and other analyses, behavior of mice can be tracked as they train and are subsequently tested on (or self-initiate testing in) odor discrimination task over months with thousands of trials performed every day. AutonoMouse system control, PyQt5 control GUI, schedule ordering, experiment monitoring, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1371/journal.pone.0211571 Free, Freely available SCR_021462 AutonoMouse 2026-08-04 09:44:49 0
Autoreward2 project
 
Resource Report
Resource Website
Autoreward2 project (RRID:SCR_021460) instrument resource, portal, data or information resource, project portal Project related to detection and rewarding rodents in modified T-maze task. System designed to detect and reward rodents in modified T maze provided by Ruhr University Bochum, Germany scientists. Infrared triggered dual reward system, Autoreward2 system, detect rodents, reward rodents, Tmaze, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: Ruhr University Bochum; North Rhine-Westphalia; Germany
Free, Freely available SCR_021460 Autoreward2 2026-08-04 09:44:49 0
BPM Biosignals project
 
Resource Report
Resource Website
BPM Biosignals project (RRID:SCR_021459) instrument resource, portal, data or information resource, project portal Portal as educational resource regarding construction and implementation of bioamplifiers as well as interpretation of biosignals. Bioamplifier construction, bioamplifier implementation, biosignals interpretation, OpenBehavior, Instrument is listed by: OpenBehavior Free, Freely available SCR_021459 BPM Biosignals 2026-08-04 09:44:49 0
Automated mouse homecage two bottle choice test project
 
Resource Report
Resource Website
Automated mouse homecage two bottle choice test project (RRID:SCR_021457) instrument resource, portal, data or information resource, project portal Project related to assessing preferences by mice among fluids in their homecages.Provided system includes homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task. Used for automated mouse homecage two bottle choice test. Homecage fitted apparatus, licks automated detection, licks photobeam based detection, two bottle choice task, instrument, equipment, USEDit, OpenBehavior, Instrument is listed by: OpenBehavior Free, Freely available SCR_021457 Automated mouse homecage two bottle choice test 2026-08-04 09:44:49 0

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