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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Laboratory of Systems Pharmacology program Resource Report Resource Website |
Laboratory of Systems Pharmacology program (RRID:SCR_022873) | LSP | data or information resource, portal, laboratory portal, organization portal | Research and education program in Harvard Program in Therapeutic Science at Harvard Medical School to advance science and to develop technology needed to accelerate invention of new medicines and personalization of patient care. Used to study molecular causes of disease, ways drugs exert their therapeutic and adverse effects, design and interpretation of clinical trials. | Harvard Program, Therapeutic Science, new medicines development, personalized patient care | has parent organization: Harvard Medical School; Massachusetts; USA | Free, Freely available | SCR_022873 | 2026-08-11 09:44:22 | 0 | |||||||||
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Natural Scenes Dataset Resource Report Resource Website 10+ mentions |
Natural Scenes Dataset (RRID:SCR_023648) | NSD | data or information resource, topical portal, portal, data set | Portal for large scale fMRI dataset conducted at ultra high field strength at Center of Magnetic Resonance Research at University of Minnesota. Dataset consists of whole brain, high resolution fMRI measurements of healthy adult subjects while they viewed thousands of color natural scenes over course of scan sessions. While viewing these images, subjects were engaged in continuous recognition task in which they reported whether they had seen each given image at any point in experiment. These data constitute massive benchmark dataset for computational models of visual representation and cognition, and can support wide range of scientific inquiry. | Natural scenes, vision, fMRI measurements, fMRI dataset, whole brain, healthy adult subjects, images, visual representation and cognition, benchmark, training data | has parent organization: University of Minnesota Twin Cities; Minnesota; USA | PMID:34916659 | Free,Freely available | https://github.com/cvnlab/nsdcode/ | SCR_023648 | 2026-08-11 09:44:41 | 44 | |||||||
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Global Alzheimers Association Interaction Network Resource Report Resource Website 10+ mentions |
Global Alzheimers Association Interaction Network (RRID:SCR_023699) | GAAIN | data or information resource, topical portal, portal, disease-related portal | Open access integrated research platform, which links scientists, shared data, and analysis tools to accelerate Alzheimer’s disease research, disease preventions, treatments and cure. Unites diverse and geographically distributed network of data partners to foster cohort discovery, collaboration and sharing. Researchers can discover clinical, genetic, imaging and other data collected across many independent studies. | USC Mark and Mary Stevens Neuroimaging and Informatics Institute, Alzheimer’s disease research, disease preventions, treatments and cure, network of data partners, cohort discovery, collaboration and sharing, clinical data, genetic data, imaging data, Alzheimer data discovery, | has parent organization: University of Southern California; Los Angeles; USA | Alzheimer’s disease | Alzheimer Association | Free, Freely available | SCR_023699 | 2026-08-11 09:44:37 | 30 | |||||||
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TIGER Data Portal Resource Report Resource Website 10+ mentions |
TIGER Data Portal (RRID:SCR_023626) | data or information resource, topical portal, portal, disease-related portal | Resource enables integrative exploration of genetic and epigenetic basis of development of Type 2 Diabetes, together with other associated functional, molecular and clinical data, centered in biology and role of pancreatic beta cells.The gene expression regulatory variation landscape of human pancreatic islets. | Type 2 Diabetes, genetic and epigenetic, functional data, molecular data, clinical data, pancreatic beta cells. | is related to: T2DSystems | Type 2 Diabetes | European Union Horizon 2020 ; Spanish government ; Swiss State Secretariat for Education‚ Research and Innovation ; American Diabetes Association Innovative and Clinical Translational Award ; Research England ; Wellcome Trust ; NIDDK U01 DK105535; NIDDK U01 DK085545 |
PMID:34644572 | SCR_023626 | Translational Human Pancreatic Islet Genotype Tissue-Expression Resource | 2026-08-11 09:44:28 | 23 | |||||||
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Enroll-HD Resource Report Resource Website 10+ mentions |
Enroll-HD (RRID:SCR_023300) | data or information resource, topical portal, portal, disease-related portal | Clinical research platform and longitudinal observational study for Huntington’s Disease families intended to accelerate progress towards therapeutics. Collaboration between Huntington’s disease families, clinicians, and researchers to accelerate progress toward effective treatments. | Clinical Research, clinical trails, Huntington’s Disease families, therapeutics, effective treatments, | Huntington’s disease | Cure HD Initiative Foundation | Free, Freely available | SCR_023300 | 2026-08-11 09:44:35 | 13 | |||||||||
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PROFisis Resource Report Resource Website |
PROFisis (RRID:SCR_024179) | simulation software, software resource, software application | Software tool that identifies interacting residues from sequence alone. Developed using transient protein�protein interfaces from complexes of experimentally known 3D structures. | identifies interacting residues from sequence alone, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_13706 | https://sources.debian.org/src/profisis/ | SCR_024179 | profisis | 2026-08-11 09:44:34 | 0 | |||||||
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CONTRAfold Resource Report Resource Website 1+ mentions |
CONTRAfold (RRID:SCR_023994) | CONTRAfold | simulation software, software resource, software application | Software novel secondary structure prediction method based on conditional log-linear models, a flexible class of probabilistic models which generalize upon SCFGs by using discriminative training and feature-rich scoring. Used for sequence prediction. | sequence prediction, | is listed by: Debian | PMID:16873527 | Free, Available for download, Freely available | OMICS_03452 | https://sources.debian.org/src/CONTRAfold/ | SCR_023994 | CONditional TRAining for RNA Secondary Structure Prediction, contrafold | 2026-08-11 09:44:40 | 2 | |||||
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Metastudent Resource Report Resource Website |
Metastudent (RRID:SCR_024110) | simulation software, software resource, software application | Software tool to predict gene ontology terms for protein sequences through homology. | predict gene ontology terms, protein sequences, through homology, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_20187 | https://sources.debian.org/src/metastudent/, https://sources.debian.org/src/metastudent-data/ | SCR_024110 | metastudent-data, metastudent | 2026-08-11 09:44:32 | 0 | |||||||
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CTSim Resource Report Resource Website |
CTSim (RRID:SCR_024004) | simulation software, software resource, software application | Software tool to simulate process of transmitting X-rays through phantom objects. Reconstructs original phantom image from projections. Has wide array of image analysis and image processing functions. | Computed tomography simulator, reconstruct original phantom image from projections, reconstruct image, | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/ctsim/ | SCR_024004 | ctsim, Open Source Computed Tomography Simulator | 2026-08-11 09:44:40 | 0 | ||||||||
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Linkage Disequilibrium Analyses for Quantitative and Discrete Traits Resource Report Resource Website 1+ mentions |
Linkage Disequilibrium Analyses for Quantitative and Discrete Traits (RRID:SCR_013365) | data or information resource, database, software resource, software application | How is association mapping going to help me find genes? During the past decade, the genes for a large number of rare mendelian traits have been identified. However, traditional linkage analyses lack power and precision when applied to complex disease. Association mapping, which compares the effects of different chromosomal variants, may be more successful at identifying genes of small effect. How does QTDT help association mapping? Association mapping can produce misleading results when the study population is not homogeneous, but includes individuals with different genetic backgrounds. Family based association tests, commonly referred to as TDTs (Transmission Disequilibrium Tests), do not produce misleading results in these circumstances. QTDT can use all the information in a pedigree to construct powerful tests of association that are robust in the presence of stratification. What does the Q stant for ? Q stands for Quantitative. Quantitative traits provide effective descriptions of many complex diseases, including asthma. For many of these conditions, all or nothing definitions of disease are arbitrary and unsatisfactory. QTDT incorporates variance components methodology in the analysis of family data and includes exact estimation of p-values for analysis of small samples and non-normal data. The QTDT abbreviation (for Quantitative Transmission Disequilibrium Tests) was first used by David Allison in his 1997 paper. This research was supported in part by the intramural program of the National Eye Institute and by National Institutes of Health Grants EY016862, EY007758, EY09859, EY012118, P30-EY014801, EY-014458, EY014467, HL084729, and HG002651, by the Foundation Fighting Blindness, the Macula Vision Research Foundation, the American Health Assistance Foundation, Research to Prevent Blindness, the Pew Charitable Trusts, the Mayo Clinic Foundation, the Casey Macular Degeneration Center Fund, the Marion W. and Edward F. Knight AMD Fund, the Harold and Pauline Price Foundation, National Genotyping Centre of Spain, and the Elmer and Sylvia Sramek Foundation. The Center for Inherited Disease Research, fully funded through a federal contract (HHSN268200782096C) from National Institutes of Health to | has parent organization: University of Michigan; Ann Arbor; USA | nif-0000-31385 | SCR_013365 | QTDT | 2026-08-11 09:42:37 | 7 | ||||||||||
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Barts and The London School of Medicine and Dentistry Labs and Facilities Resource Report Resource Website |
Barts and The London School of Medicine and Dentistry Labs and Facilities (RRID:SCR_012710) | Barts and The London School of Medicine and Dentistry Labs & Facilities | portal, service resource, data or information resource, core facility, access service resource | Barts and The London offers international levels of excellence in research and teaching while serving a population of unrivalled diversity. Through partnership with our linked trusts, notably Barts and The London NHS Trust, and our associated University Hospital Trusts _������������_ Homerton, Newham, Whipps Cross and Queen''''s (Romford) the School''''s research and teaching is informed by an exceptionally wide ranging and stimulating clinical environment. |
is listed by: ScienceExchange is related to: Queen Mary University of London Labs and Facilities is related to: Blizard Institute of Cell and Molecular Science Labs and Facilities has parent organization: Queen Mary University of London; London; United Kingdom |
SciEx_8912 | SCR_012710 | 2026-08-11 09:42:40 | 0 | ||||||||||
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Michigan State University Labs and Facilities Resource Report Resource Website |
Michigan State University Labs and Facilities (RRID:SCR_012252) | MSU Labs & Facilities, MSU Labs and Facilities | portal, service resource, data or information resource, core facility, access service resource | An Portal, Core facility |
is listed by: ScienceExchange is related to: Michigan State University RTSF Genomics Core Facility is related to: MSU Comprehensive Phytopathogen Genomics Resource has parent organization: Michigan State University; Michigan; USA |
SciEx_1277 | SCR_012252 | Michigan State University Labs & Facilities | 2026-08-11 09:42:24 | 0 | |||||||||
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Phaff Yeast Culture Collection Resource Report Resource Website 1+ mentions |
Phaff Yeast Culture Collection (RRID:SCR_016781) | portal, service resource, data or information resource, database, organization portal | Collection of wild yeast in the world. Academic and industrial resarchers utilize this collection for a variety of research and applications, including pigments, enzymes, food ingredients, and hosts for protein expression. Provides contract screening and strain selection services. | yeast, strain, wild, screening, selection, service | has parent organization: University of California at Davis; California; USA | Commercially available | SCR_016781 | 2026-08-11 09:43:31 | 6 | ||||||||||
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CMMT Mouse Animal Production Service Resource Report Resource Website |
CMMT Mouse Animal Production Service (RRID:SCR_016403) | EMS, MAPS, CMMT MAPS, CMMT EMS | biomaterial supply resource, organism supplier, material resource | Supplier of mice for research purposes. The service is run by Dr. Elizabeth M. Simpson, Ph.D. and is affiliated with her lab. | mouse, strain, supply, research, repository, subject, genetic engineering, knockout, mice, gene, model | SCR_016403 | Mouse Animal Production Service (MAPS), Centre for Molecular Medicine and Therapeutics MAPS, Dr. Elizabeth M. Simpson PhD, Elizabeth M. Simpson, Mouse Animal Production Service, Centre for Molecular Medicine and Therapeutics Mouse Animal Production Service | 2026-08-11 09:43:18 | 0 | ||||||||||
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Pediatric Cancer Data Commons Resource Report Resource Website 1+ mentions |
Pediatric Cancer Data Commons (RRID:SCR_022369) | PCDC | data or information resource, topical portal, portal, disease-related portal | PCDC brings together clinical, genomic, and imaging data from institutions around the world to transform pediatric cancer research and outcomes. Headquartered at University of Chicago, PCDC works with international leaders in pediatric cancers and National Cancer Institute to develop and apply uniform data standards that facilitate collection, combination, and analysis of data from many different sources. PCDC Consortium developes common core data dictionary and common governance structure spanning pediatric cancers neuroblastoma, soft tissue sarcoma, acute myeloid leukemia, acute lymphoblastic leukemia, germ cell tumors, bone tumors, and Hodgkin lymphoma to enable innovative cross disease research as well as set standard for future cancer data commons endeavors. | pediatric cancer, clinical data, genomic data, imaging data, uniform data standards, common core data dictionary, common governance structure, | is related to: University of Chicago; Illinois; USA | pediatric cancer, neuroblastoma, soft tissue sarcoma, acute myeloid leukemia, acute lymphoblastic leukemia, germ cell tumors, bone tumors, Hodgkin lymphoma | Free, Freely available | SCR_022369 | 2026-08-11 09:44:22 | 2 | ||||||||
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TIGRFAMS Resource Report Resource Website 100+ mentions |
TIGRFAMS (RRID:SCR_005493) | JCVI TIGRFAMS, TIGRFAM | data or information resource, database, data set | Consists curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins. Starting with release 10.0, TIGRFAMs models use HMMER3, which provides excellent search speed as well as exquisite search sensitivity. See the "TIGRFAMs Complete Listing" page to review the accession, protein name, model type, and EC number (if assigned) of all models. TIGRFAMs is a member database in InterPro. The HMM libraries and supporting files are available to download and use for free from our FTP site. | sequence alignment, hidden markov model, protein sequence, classification, protein, protein family, sequence homology, sequence, homology, function, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: InterPro is related to: InterPro has parent organization: J. Craig Venter Institute |
PMID:23197656 | Free | nif-0000-03560, OMICS_01700, biotools:tigrfams | https://bio.tools/tigrfams | http://www.tigr.org/TIGRFAMs | SCR_005493 | TIGRFAMs | 2026-08-11 09:41:17 | 142 | ||||
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NIDA Podcasts Resource Report Resource Website |
NIDA Podcasts (RRID:SCR_005660) | NIDA Podcasts | data or information resource, podcast, narrative resource | Audio clips that highlight research efforts at the National Institute on Drug Abuse and include interviews with prominent NIDA scientists. To listen to these clips, just click Listen Now under the clip summary. You must have Real Media Player or Windows Media Player installed to download these clips. To view a printable transcript of a clip, click View Transcript under the clip summary. | drug abuse, transcript | has parent organization: National Institute on Drug Abuse | NIDA | All of these clips are free from copyright and can be used for broadcast or other use with acknowledgement of the National Institute on Drug Abuse. | nlx_149377 | SCR_005660 | 2026-08-11 09:41:10 | 0 | |||||||
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AIDS.org Resource Report Resource Website 1+ mentions |
AIDS.org (RRID:SCR_005537) | AIDS.org | data or information resource, topical portal, portal, disease-related portal | The mission of AIDS.ORG is to help prevent HIV infections and to improve the lives of those affected by HIV and AIDS by providing education and facilitating the free and open exchange of knowledge at an easy-to-find centralized website. AIDS.ORG makes access to important AIDS information easier and faster. We provide prevention, testing, and treatment information currently to well over 4 million people a year. AIDS.ORG has been awarded the Health on the Net Foundation Code of Conduct (HONcode) seal for reliability and credibility of information in the field of healthcare. Additionally, every year over 2.4 million young people under the age of 25 turn to AIDS.ORG, making us an important resource since over 50% of all new HIV infections in the USA occur in this age group. AIDS.ORG, Inc. is a nonprofit 501(c) (3) educational organization, and maintains a very strict privacy policy. We make it our goal to be the best starting point for someone looking for AIDS information on the Internet. Our intent is that users be directed to the best information on the topic they''re investigating. We bring people together to share knowledge and experiences. In the past, we also provided the very first Internet-based program of accredited AIDS education for medical professionals, allowing doctors in rural and isolated areas to better serve AIDS patients. | nlx_144631 | SCR_005537 | 2026-08-11 09:41:17 | 2 | |||||||||||
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NIH Office of Science Education Resource Report Resource Website |
NIH Office of Science Education (RRID:SCR_005603) | OSE | portal, data or information resource, narrative resource, knowledge environment, training material, organization portal | The NIH Office of Science Education (OSE) coordinates science education activities at the NIH and develops and sponsors science education projects in house. These programs serve elementary, secondary, and college students and teachers and the public. Activities * Develop curriculum supplements and other educational materials related to medicine and research through collaborations with scientific experts at NIH * Maintain a website as a central source of information about NIH science education resources * Establish national model programs in public science education, such as the NIH Mini-Med School and Science in the Cinema * Promote science education reform as outlined in the National Science Education Standards and related guidelines The OSE was established in 1991 within the Office of Science Policy of the Office of the Director of the National Institutes of Health. The NIH is the world''s foremost biomedical research center and the U.S. federal government''s focal point for such research. It is one of the components of the Department of Health and Human Services (HHS). The Office of Science Education (OSE) plans, develops, and coordinates a comprehensive science education program to strengthen and enhance efforts of the NIH to attract young people to biomedical and behavioral science careers and to improve science literacy in both adults and children. The function of the Office is as follows: (1) develops, supports, and directs new program initiatives at all levels with special emphasis on targeting students in grades kindergarten to 16, their educators and parents, and the general public; (2) advises NIH leadership on science education issues; (3) examines and evaluates research and emerging trends in science education and literacy for policy making; (4) works closely with the NIH extramural, intramural, women''s health, laboratory animal research, and minority program offices on science education special issues and programs to ensure coordination of NIH efforts; (5) works with NIH institutes, centers, and divisions to enhance communication of science education activities; and (6) works cooperatively with other public- and private-sector organizations to develop and coordinate activities. | science, education, high school, middle school, elementary school, animal, research, bioethics, blood, lymphatic system, bones, joints, muscle, brain, nervous system, cell biology, cancer, child, adolescent, complementary medicine, alternative medicine, digestive system, ears, nose, throat, endocrine system, environmental, toxicology, evolution, eye, vision, food, nutrition, metabolism, genomics, genetics, heart, circulation, history, immune system, injury, wound, kidney, urinary system, medical research, man, mental health, behavior, microbiology, infectious disease, mouth, teeth, therapy, reproductive system, respiratory system, safety, late adult human, sexual health, skin, hair, nail, sleep, social, family, substance abuse, technology, wellness, lifestyle, woman, health, human, lesson plan, supplemental curricula, book, image, multimedia, poster, k-12, adult, non-human animal |
has parent organization: National Institutes of Health is parent organization of: NIH SciEd Blog |
NIH | nlx_146222 | SCR_005603 | NIH OSE, National Institutes of Health Office of Science Education | 2026-08-11 09:41:09 | 0 | |||||||
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NIMH Resources for Research Training and Career Development Resource Report Resource Website |
NIMH Resources for Research Training and Career Development (RRID:SCR_005624) | NIMH Resources for Research Training and Career Development | data or information resource, topical portal, portal, training resource | A portal to the National Institute of Mental Health''s Research Training, Career Development, and Related Programs. Topics cover Resources for Applicants, Individual Fellowship Programs, Individual Career Development Programs, Institutional Training Programs, Additional Career Development/Training-Related Opportunities, and Training Programs to Increase Workforce Diversity. | research, career development, fellowship, training, career | has parent organization: National Institute of Mental Health | NIMH | nlx_146240 | SCR_005624 | NIMH Research Training Career Development and Related Programs, NIMH Resources for Research Training Career Development, Research Training Career Development and Related Programs | 2026-08-11 09:41:09 | 0 |
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