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http://psb.kobic.re.kr/STAP/refinement/
STAP refinement of NMR Database is based the Statistical Torsion Angles Potentials to refine the NMR structure. It stored original solution NMR structures from the Protein Data Banks and our refined structures. Currently we carried out 2,405 refined NMR structure (until Sept 20, 2011). According to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. STAP of NMR Refinement Database is a public database of 2405 refined NMR solution structures from the Protein Data Bank (PDB). A simulated annealing protocol was employed to obtain refined structures with target potentials, including the newly developed STAP. The refined database was extensively analyzed using various quality indicators from several assessment programs to determine the nuclear Overhauser effect (NOE) completeness, Ramachandran appearance, (1)-(2) rotamer normality, various parameters for protein stability and other indicators. Most quality indicators are improved in our protocol mainly due to the inclusion of the newly developed knowledge-based potentials. This database can be used by the NMR structure community for further development of research and validation tools, structure-related studies and modelling in many fields of research.
Proper citation: Statistical Torsional Angles Potentials of NMR Refinement Database (RRID:SCR_008917) Copy
This colony provides a national resource of rhesus monkeys and their tissues to carry out research benefiting the scientific community. The RMBRR maintains a colony of monkeys that have been derived to be specific pathogen free for members of both the herpes and retrovirus families. Over its history, the RMBRR has developed specialized management techniques, housing facilities and highly trained staff to avail these purposefully bred laboratory models, which are 93% genetically identical to humans, to researchers worldwide. Historically, this animal model has been instrumental in research involving blood classification, polio vaccine development, and drug safety and efficacy while currently they are the preferred model for studying the mechanisms of immunodeficiency diseases. Their susceptibility to Simian Immunodeficiency Virus and their homology to the human major histocompatibility complex (MHC) Class I, II and TCR genes make them valuable in HIV research. They are currently the models of choice for HIV/AIDS vaccine development and study. Other areas of research include atherosclerosis, myocarditis, alcoholism, diabetes, cancer and aging. The overall objectives of this resource are to improve the resources available at the RMBRR and to conduct resource-relevant research that improves both the health of the rhesus colony and its usefulness for studies of human disease. The Resource and Management Core is responsible for providing animal resources, tissues/biological fluids, cell lines, expert advice and research support to NIH extramural and intramural programs, other federal agencies and to private sponsors. The Resource-Related Research Core conducts research to improve the health of the animals maintained with special emphasis on studies that will enhance the usefulness of the rhesus as a model for studies of human disease.
Proper citation: Rhesus Monkey Breeding and Research (RRID:SCR_008357) Copy
THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 15, 2017.
Not yet vetted by NIF curator
Proper citation: Advanced NuMed Technologies, Ltd. (RRID:SCR_010576) Copy
http://www.asiabiotech.com/08/0824/1393_1394.pdf
THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016.
Proper citation: Singapore Tissue Network (RRID:SCR_010697) Copy
Not yet vetted by NIF curator
Proper citation: Genetic Repositories Australia (RRID:SCR_010577) Copy
Not yet vetted by NIF curator
Proper citation: Singapore Cord Blood Bank (RRID:SCR_010698) Copy
http://www.stn.org.sg/index.htm
Not yet vetted by NIF curator
Proper citation: Singapore Biobank (RRID:SCR_010615) Copy
Not yet vetted by NIF curator
Proper citation: Iran National Tumor Bank (RRID:SCR_010666) Copy
https://www.dandb.com/businessdirectory/precisionallograftsolutions-sanantonio-tx-5265368.html
THIS RESOURCE IS NO LONGER IN SERVCE, documented September 2, 2016. A commercial tissue bank focusing on human tissue.
Proper citation: Precision Allograft Solutions (RRID:SCR_010702) Copy
Not yet vetted by NIF curator
Proper citation: International Biobank, Inc. (RRID:SCR_010549) Copy
Provides human tissue for drug discovery scientists. * Human Biospecimens: Frozen & Fixed Human Tissues; Human RNA/DNA; Human Primary Cells / Cell lines; Custom Procurement; Oncology tissue, biofluid and RNA sets at special prices * Human Tissue-Based Services: Gene Expression, Molecular Pathology, Biochemical Pharmacology, Metabolism and Toxicity * Predictive Human Disease Models
Proper citation: Asterand (RRID:SCR_010703) Copy
http://www.tissue-solutions.com/
Tissue Solutions offers you a single point to access the entire range of human biological materials for all your research and development needs. This includes diseased and normal tissues in fresh, frozen and FFPE formats. Using our large network of ethical sources we find the tissues you require, to your specifications and will deliver them to your door. Our goal is to provide high quality and well characterized samples to biotech companies, the pharmaceutical community and contract research organizations worldwide. We also organize customized and prospective tissue acquisition projects and give specialized advice relating to all aspects of the acquisition process, including intellectual input on project design. We appreciate that you would rather spend your time finding new biomarkers and developing, testing and validating novel drugs to cure human disease than spend your time sourcing material to help you do your work, so let our dedicated Tissue Acquisitionists lessen your workload and become a virtual part of your team.
Proper citation: Tissue Solutions (RRID:SCR_010672) Copy
http://medicine.nus.edu.sg/tissue/
Tissue bank that provides samples and associated clinical information to associated researchers.
Proper citation: National University Tissue Repository (RRID:SCR_010717) Copy
http://www.brc.riken.go.jp/lab/cell/english/
Not yet vetted by NIF curator
Proper citation: Riken BRC Cell Bank (RRID:SCR_010553) Copy
https://www.twbiobank.org.tw/new_web_en/index.php
Taiwan Biobank intends to conduct large-scale cohort studies and case-control studies on local diseases. The cohort study will call for 200,000 volunteers, while the case-control study will invite 100,000 patients with the 10 to 15 most common diseases. These studies will enable Taiwan Biobank to identify the disease-causing factors and mechanisms of common diseases to facilitate the development of better treatment and prevention, reduce the cost of medical treatment and make it possible to achieve the goal of improving the island nation’s health.
Proper citation: Taiwan Biobank (RRID:SCR_010557) Copy
Not yet vetted by NIF curator
Proper citation: SVF Foundation (RRID:SCR_010678) Copy
http://func.mshri.on.ca/yeast/
YeastFunc is a public database for browsing of quantitative S. cerevisiae gene function predictions, gene function linkage predictions, and the evidence behind the predictions, overlayed upon the experimentally verified annotations as taken from the SGD, MGI and Ensembl Gene databases, respectively. Three aspects of gene function predictions are displayed: * First, for a particular gene, users can view all functions ranked by certainty that the corresponding gene-function pair is a true annotation. * Second, for a particular function, users can view all genes ranked by certainty. * The third aspect is functional linkage predictions, displayed alongside the first two aspects as gene-centered and function-centered images, respectively, and editable via Cytoscape. These functional linkage graphs are independently informative, though they are also used as a step in one of the gene function prediction techniques whose certainty scores are displaying on this site, so they can be treated as evidence. Evidence leading to all gene function predictions in the first two aspects as well as all experimentally verified gene function annotation is displayed alongside each of the first two aspects, allowing the user to understand the basis for the certainty score. To get started type a Gene Ontology ID, an SGD ID, an ORF ID, an Ensembl gene id, an Entrez gene id, a Uniprot id, a standard gene name, or a general search term in the text box. The results of your search will appear below the search box. These results are solely Gene Ontology terms and genes for the species that you selected. Click the result that you would like to investigate further. Note the paging toolbar at the bottom of the results list. If you are interested in performing your own analyses upon all prediction scores displayed on this site you may download the file. Of the 15,633,440 scored yeast gene-function pairs, 6,368 genes have scores and 4,877 genes have at least one experimentally verified function.
Proper citation: YeastFunc (RRID:SCR_010561) Copy
http://www.nordgen.org/index.php/en/content/view/full/467
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 18,2023.
Proper citation: Nordic Genetic Resource Centre (Plants) (RRID:SCR_010529) Copy
http://www.vetmeduni.ac.at/en/vetcore/research/research-units/vetbiobank/
Not yet vetted by NIF curator
Proper citation: VetBioBank (RRID:SCR_008716) Copy
http://www.croptrust.org/main/
Not yet vetted by NIF curator
Proper citation: Israel Plant Gene Bank (RRID:SCR_008718) Copy
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