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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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GWASELECT Resource Report Resource Website |
GWASELECT (RRID:SCR_013303) | GWASELECT | software application, software resource | Software application that implements a novel variable selection method for GWAS data and is able to handle more than half million SNPs. Extensive simulation studies and real data analysis show that this method enjoys high power and low false discovery rate compared to existing variable selection methods. The variables selected by GWASelect can be readily placed into a logistic regression model for disease prediction. The current release is designed for binary outcome under the additive mode of inheritance. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154370 | SCR_013303 | 2026-08-04 09:43:11 | 0 | |||||||||
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R/QTLDESIGN Resource Report Resource Website 1+ mentions |
R/QTLDESIGN (RRID:SCR_013424) | software application, software resource | Software application to help plan quantitative trait locus (QTL) experiments. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154598 | https://cran.r-project.org/web/packages/qtlDesign/index.html | SCR_013424 | 2026-08-04 09:43:12 | 9 | |||||||||
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SNIPPEEP Resource Report Resource Website 1+ mentions |
SNIPPEEP (RRID:SCR_013309) | software application, software resource | Software application that is an interactive graphic interface to visualise results from whole genome genotyping. It allows one to visualise single subjects and groups of subjects, and provides a direct connection with the UCSC Genome Browser. (entry from Genetic Analysis Software) | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | nlx_154019 | SCR_013309 | 2026-08-04 09:43:11 | 3 | ||||||||||
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QTDT Resource Report Resource Website 10+ mentions |
QTDT (RRID:SCR_013391) | QTDT | software application, software resource | Software application that performs linkage disequilibrium (TDT) and association analysis for quantitative traits. Includes support for the methods of Abecasis et al. (2000), Fulker et al. (1999), Monks et al. (1998), Allison (TDTQ5, 1997) and Rabinowitz (1997). Supports families of any size, with or without parental information. Includes simple variance components modelling. Interfaces with SimWalk2 for IBD estimation. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, solaris, linux, ms-windows | is listed by: Genetic Analysis Software | nlx_154101 | SCR_013391 | Quantitative (Trait) Transmission/Disequilibrium Test | 2026-08-04 09:43:12 | 34 | ||||||||
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BAYESFST Resource Report Resource Website 1+ mentions |
BAYESFST (RRID:SCR_013479) | software application, software resource | Software application for Bayesian estimation of the coancestry coefficient FST (entry from Genetic Analysis Software) | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | nlx_154236, biotools:bayesfst | https://bio.tools/bayesfst | SCR_013479 | 2026-08-04 09:43:13 | 2 | |||||||||
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SUPERLINK Resource Report Resource Website 10+ mentions |
SUPERLINK (RRID:SCR_013360) | SUPERLINK | software application, software resource | Software program that performs exact linkage analysis with the same input-output relationships as in standard genetic linkage programs such as LINKAGE, FASTLINK, VITESSE, but can run larger files than previous programs. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, ms-windows, linux, macos x | is listed by: Genetic Analysis Software | nlx_154665 | SCR_013360 | 2026-08-04 09:43:11 | 23 | |||||||||
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HWMET Resource Report Resource Website |
HWMET (RRID:SCR_013480) | HWMET | software application, software resource | Software application for Bayesian estimation of the population inbreeding coefficient f (entry from Genetic Analysis Software) | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | nlx_154404 | SCR_013480 | 2026-08-04 09:43:13 | 0 | |||||||||
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VH Resource Report Resource Website |
VH (RRID:SCR_013402) | VH | software application, software resource | Software application for displaying estimated haplotype data (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154689 | SCR_013402 | visual haplotype | 2026-08-04 09:43:12 | 0 | ||||||||
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GRR Resource Report Resource Website |
GRR (RRID:SCR_013496) | GRR | software application, software resource | A graphical tool designed for detection of errors in relationship specification in general pedigrees by use of genome scan marker data. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows | is listed by: Genetic Analysis Software | nlx_154365 | SCR_013496 | Graphical Representation of Relationships | 2026-08-04 09:43:14 | 0 | ||||||||
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PEDFIDDLER Resource Report Resource Website |
PEDFIDDLER (RRID:SCR_013376) | PEDFIDDLER | software application, software resource | Software suite of six programs that can be used as a stand-alone extension of the pedigree drawing facilities found in the publicly available version of PEDPACK. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, c++, unix, (osf1, and solaris 2.7, alphalinux), ms-windows, (xp home/win32/win95), linux | is listed by: Genetic Analysis Software | nlx_154517 | SCR_013376 | PEDPACK in PANGAEA | 2026-08-04 09:43:12 | 0 | ||||||||
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VG Resource Report Resource Website 1+ mentions |
VG (RRID:SCR_013378) | VG | software application, software resource | Software program that presents complete raw datasets of individuals'' genotype data using a display format with samples as rows and polymorphisms as columns. The color code is: (1) blue: homozygous genotype for the common allele; (2) red: heterozygous genotype; (3) yellow: homozygous genotype for the rare allele; and (4) grey: missing data (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154688 | SCR_013378 | Visual Genotype | 2026-08-04 09:43:12 | 3 | ||||||||
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TAGIMPUTE Resource Report Resource Website |
TAGIMPUTE (RRID:SCR_013338) | software application, software resource | A command-line program for the imputation of untyped SNPs. tagIMPUTE is based on a few flanking SNPs that can optimally predict the SNP under imputation. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154670 | SCR_013338 | TAGging-snp based IMPUTATE | 2026-08-04 09:43:11 | 0 | |||||||||
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SNP HITLINK Resource Report Resource Website |
SNP HITLINK (RRID:SCR_013340) | SNP HITLINK | software application, software resource | Software program providing a useful pipeline to directly connect SNP data and linkage analysis program. SNP HiTLink currently supports the data from SNP chips provided by Affymetrix (Mapping 100k/500k array set, Genome-Wide Human SNP array 5.0/6.0) and Illumina (recently supported), carrying out typical linkage analysis programs of MLINK (FASTLINK/ LINKAGE package), Superlink, Merlin and Allegro. (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154644, biotools:snp_hitlink | https://bio.tools/snp_hitlink | SCR_013340 | SNP HIgh-Throughput LINKage analysis system | 2026-08-04 09:43:11 | 0 | |||||||
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SGS Resource Report Resource Website |
SGS (RRID:SCR_013460) | SGS | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, visualbasic, ms-windows, (95/98/00/nt) | is listed by: Genetic Analysis Software | nlx_154054 | SCR_013460 | 2026-08-04 09:43:13 | 0 | |||||||||
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AUTOSCAN Resource Report Resource Website 10+ mentions |
AUTOSCAN (RRID:SCR_013510) | AUTOSCAN | software application, software resource | A helper program to automate the tedious process of the creation of input files from genotype data of genome-wide scans (entry from Genetic Analysis Software) | gene, genetic, genomic, c and unix-shell (bourne), unix, (solaris/dec-unix) | is listed by: Genetic Analysis Software | nlx_154235 | SCR_013510 | 2026-08-04 09:43:14 | 18 | |||||||||
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Epilepsy Genetic Association Database Resource Report Resource Website 1+ mentions |
Epilepsy Genetic Association Database (RRID:SCR_006840) | database, data or information resource | The Epilepsy Genetic Association Database (epiGAD) is an online repository of data relating to genetic association studies in the field of epilepsy. It summarizes the results of both published and unpublished studies, and is intended as a tool for researchers in the field to keep abreast of recent studies, providing a bird''s eye view of this research area. The goal of epiGAD is to collate all association studies in epilepsy in order to help researchers in this area identify all the available gene-disease associations. Finally, by including unpublished studies, it hopes to reduce the problem of publication bias and provide more accurate data for future meta-analyses. It is also hoped that epiGAD will foster collaboration between the different epilepsy genetics groups around the world, and faciliate formation of a network of investigators in epilepsy genetics. There are 4 databases within epiGAD: - the susceptibility genes database - the epilepsy pharmacogenetics database - the meta-analysis database - the genome-wide association studies (GWAS) database The susceptibility genes database compiles all studies related to putative epilepsy susceptibility genes (eg. interleukin-1-beta in TLE), while the pharmacogenetics studies in epilepsy (eg. ABCB1 studies) are stored in ''phamacogenetics''. The meta-analysis database compiles all existing published epilepsy genetic meta-analyses, whether for susceptibility genes, or pharmacogenetics. The GWAS database is currently empty, but will be filled once GWAS are published. Sponsors: The epiGAD website is supported by the ILAE Genetics Commission. | epilepsy, gene, genome, genetic, bias, disease, interleukin-1-beta, meta-analysis, pharmacogenetic, pharmacogenetics, published, repository, research, researcher, studies, study, temporal lobe epilepsy (tle), tool, unpublished | nif-0000-10221 | SCR_006840 | epiGAD | 2026-08-04 09:41:42 | 5 | ||||||||||
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Tetraodon nigroviridis Database Resource Report Resource Website |
Tetraodon nigroviridis Database (RRID:SCR_007123) | database, data or information resource | This database have been funded by the National Human Genome Research Institute (NHGRI) to produce shotgun sequence of the Tetraodon nigriviridis genome. The strategy involves Whole Genome Shotgun (WGS) sequencing, in which sequence from the entire genome is generated. Whole genome shotgun libraries were prepared from Tetraodon genomic DNA obtained from the laboratory of Jean Weissenbach at Genoscope. Additional sequence data of approximately 2.5X coverage of Tetraodon has also been generated by Genoscope in plasmid and BAC end reads. Broad and Genoscope intend to pool their data and generate whole genome assemblies. Tetraodon nigroviridis is a freshwater pufferfish of the order Tetraodontiformes and lives in the rivers and estuaries of Indonesia, Malaysia and India. This species is 20-30 million years distant from Fugu rubripes, a marine pufferfish from the same family. The gene repertoire of T. nigroviridis is very similar to that of other vertebrates. However, its relatively small genome of 385 Mb is eight times more compact than that of human, mostly because intergenic and intronic sequences are reduced in size compared to other vertebrate genomes. These genome characteristics along with the large evolutionary distance between bony fish and mammals make Tetraodon a compact vertebrate reference genome - a powerful tool for comparative genetics and for quick and reliable identification of human genes. | estruary, evolutionary, fish, freshwater, fugu rubripes, gene, genetic, bac, bony, distance, dna, genome, genomic, human, intergenic, intronic, nigriviridis, plasmid, pufferfish, river, sequence, sequencing, shotgun, specie, tetraodon, tetraodontiformes, vertebrate | nif-0000-20998 | SCR_007123 | TND | 2026-08-04 09:41:46 | 0 | ||||||||||
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PELICAN Resource Report Resource Website 10+ mentions |
PELICAN (RRID:SCR_001695) | PELICAN | software application, software resource | Software utility for graphically editing the pedigree data files used by programs such as FASTLINK, VITESSE, GENEHUNTER and MERLIN. It can read in and write out pedigree files, saving changes that have been made to the structure of the pedigree. Changes are made to the pedigree via a graphical display interface. The resulting display can be saved as a pedigree file and as a graphical image file. | gene, genetic, genomic, java, pedigree, linkage analysis, editor |
is listed by: OMICtools is listed by: Genetic Analysis Software has parent organization: Google Sites |
PMID:15059819 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00215, nlx_154035 | http://www.mrc-bsu.cam.ac.uk/personal/frank/software/pelican/, http://www.rfcgr.mrc.ac.uk/Software/PELICAN/ | SCR_001695 | Pedigree Editor for LInkage Computer ANalysis | 2026-08-04 09:40:27 | 13 | |||||
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OSA Resource Report Resource Website 1+ mentions |
OSA (RRID:SCR_002016) | OSA | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 19,2025. Software application that allows the researcher to evaluate evidence for linkage even when heterogeneity is present in a data set. This is not an unusual occurrence when studying diseases of complex origin. Families are ranked by covariate values in order to test evidence for linkage among homogeneous subsets of families. Because families are ranked, a priori covariate cutpoints are not necessary. Covariates may include linkage evidence at other genes, environmental exposures, or biological trait values such as cholesterol, age at onset, and so on. | gene, genetic, genomic, c++, unix, solaris, linux |
is listed by: Genetic Analysis Software has parent organization: Duke University; North Carolina; USA |
NIMH R01 MH59528 | PMID:18473393 PMID:15185403 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154504 | http://wwwchg.duhs.duke.edu/software/osa.html | SCR_002016 | Ordered Subset Analysis, OSA Program, Ordered Subset Analysis Program | 2026-08-04 09:40:32 | 1 | ||||
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METAL Resource Report Resource Website 1000+ mentions |
METAL (RRID:SCR_002013) | software application, software resource | Software application designed to facilitate meta-analysis of large datasets (such as several whole genome scans) in a convenient, rapid and memory efficient manner. (entry from Genetic Analysis Software) | gene, genetic, genomic, whole genome |
is listed by: OMICtools is listed by: Genetic Analysis Software has parent organization: University of Michigan; Ann Arbor; USA |
PMID:20616382 | nlx_154476, OMICS_00239 | SCR_002013 | Metal - Meta Analysis Helper, METa AnaLysis Helper | 2026-08-04 09:40:32 | 2273 |
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