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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Human Microbiome Compendium Resource Report Resource Website 1+ mentions |
Human Microbiome Compendium (RRID:SCR_026991) | data or information resource, project portal, portal | Microbial ecology dataset describing the composition of publicly available human microbiome samples deposited in INSDC databases (Sequence Read Archive, European Nucleotide Archive, Digital Data Bank of Japan). Genus-level read counts are available for more than 168,000 samples from around the world, with additional curated metadata for samples and projects. | microbiome, compendium, dataset, public data, amplicon, shotgun, metagenomics, | NLM R01LM013863 | PMID:39848248 | https://doi.org/10.5281/zenodo.8186993 | SCR_026991 | 2026-08-10 09:38:16 | 1 | |||||||||
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TP53 Database Resource Report Resource Website 10+ mentions |
TP53 Database (RRID:SCR_026878) | data or information resource, database | Database compiles various types of data and information from literature and generalist databases on human TP53 gene variations related to cancer. | data and information from the literature, data and information from generalist databases, human TP53 gene variations related to cancer, | Free, Freely available | SCR_026878 | NCI TP53 Database | 2026-08-10 09:38:16 | 13 | ||||||||||
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African Genome Variation Database Resource Report Resource Website |
African Genome Variation Database (RRID:SCR_026917) | data or information resource, database | Database for exploring genomic variation data within African populations. | African populations, genomic variation data, | Restricted | SCR_026917 | African Genome Variation Database (AGVD) | 2026-08-10 09:38:15 | 0 | ||||||||||
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CBS StatLine - Lifestyle Resource Report Resource Website 1+ mentions |
CBS StatLine - Lifestyle (RRID:SCR_027121) | data or information resource, database | Database of Statistics Netherlands (CBS). Contains lifestyle data of Dutch population living in private households. The numbers can be broken down by various personal characteristics. | Statistics Netherlands, lifestyle data, Dutch population, population living in private households, personal characteristics, | Free, Freely available, | SCR_027121 | 2026-08-10 09:38:20 | 1 | |||||||||||
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MarketScan by Merative Resource Report Resource Website 1+ mentions |
MarketScan by Merative (RRID:SCR_027329) | data or information resource, database | Employer-sourced medical and drugs claims database of the under-65 working population and their dependents, as well as 65+ with Medicare supplemental insurance paid by employers. | medical and drugs claims database, under-65 working population, Medicare, supplemental insurance population, | Restricted | SCR_027329 | 2026-08-10 09:38:24 | 1 | |||||||||||
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NDC-SOLES Resource Report Resource Website |
NDC-SOLES (RRID:SCR_027274) | data or information resource, web application, software resource | Web application to systematically collect, synthesise, and display experimental evidence in genetically-modified animal models of neurodevelopmental conditions. | collect, synthesise, display, experimental evidence, genetically-modified animal models, neurodevelopmental conditions, | PMID:37219941 | Free, Freely available | SCR_027274 | NDC-Systematic Online Living Evidence Summaries | 2026-08-10 09:38:20 | 0 | |||||||||
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EssSubgraph Resource Report Resource Website 1+ mentions |
EssSubgraph (RRID:SCR_027354) | EssSubgraph | algorithm resource, software resource | A model algorithm that integrates omics data and network data to predict essential genes. | Biomarker, essential gene prediction, GNN | Cancer | National Science Foundation 2243562; National Institutes of Health R35GM149531 |
DOI:10.1101/2025.07.21.665218 | Integrating omics data and protein-protein interaction network data to predict essential genes. | https://github.com/wenmm/EssSubgraph/tree/main | SCR_027354 | 2026-08-10 09:38:21 | 1 | ||||||
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adaptive_stitching Resource Report Resource Website |
adaptive_stitching (RRID:SCR_027653) | algorithm resource, software resource | Software algorithm for restitching overlapping image crops with intensity adjustment. Crops are intensity corrected and weight adjusted to produce uniform intensity composite image. | restitching overlapping image crops, intensity adjustment, produce uniform intensity composite image, | Free, Freely available, | SCR_027653 | 2026-08-10 09:38:27 | 0 | |||||||||||
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Atlantis Resource Report Resource Website 1+ mentions |
Atlantis (RRID:SCR_027648) | data or information resource, database | Integrative database for human proteome structural and functional sites. Used for understanding role of specific residues in protein structures, complexes, and interaction networks. Integrates various structural and functional annotation layers for each residue, offering comprehensive understanding of protein functionality. | human proteome, protein structures, protein complexes, protein interaction, protein structural and functional sites, | Free, Freely available | SCR_027648 | 2026-08-10 09:38:26 | 3 | |||||||||||
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NHGRI: Establishing a Central Resource of Data from Genome Sequencing Projects Resource Report Resource Website |
NHGRI: Establishing a Central Resource of Data from Genome Sequencing Projects (RRID:SCR_003205) | NHGRI: Establishing a Central Resource of Data from Genome Sequencing Projects | data or information resource, project portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 30,2025. 2012 workshop to establish a Central Resource of Data from Genome Sequencing Projects. The workshop addressed the challenges to aggregating and analyzing data sets from genome sequencing studies, such as: * Data sets being generally hard to access. * Data residing in various databases. * Variant and exposure/phenotype data not being comparable across studies. Participants in the workshop discussed options for dealing with these challenges, along with their costs and tradeoffs. Videos and accompanying slides from the workshop are available. Also available as a video playlist on GenomeTV | genome, sequencing |
is listed by: OMICtools has parent organization: National Human Genome Research Institute |
THIS RESOURCE IS NO LONGER IN SERVICE | SCR_003205 | 2026-08-10 09:31:58 | 0 | |||||||||
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Neurobagel Resource Report Resource Website |
Neurobagel (RRID:SCR_027847) | data or information resource, web application, software resource | Open source software ecosystem designed to facilitate harmonization, search, and discovery of neuroimaging study cohorts across decentralized datasets. Allows researchers to find participants across different studies based on specific clinical, demographic, and imaging criteria without needing to merge all the original data into a single central database. Provides tools to connect a local neuroimaging dataset with others in decentralized framework using linked data principles.You can contribute to Neurobagel by enhancing its tools (annotation, querying), improving documentation, adding new features/models, fixing bugs, or sharing your own data/expertise to help researchers find and harmonize brain imaging cohorts through standardized metadata and knowledge graphs. | neuroimaging study cohorts, decentralized datasets, neuroimaging dataset, | Free, Freely available, | https://github.com/neurobagel/documentation | SCR_027847 | 2026-08-10 09:38:32 | 0 | ||||||||||
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NIH Brain Development Cohorts (NBDC) Data Hub Resource Report Resource Website 10+ mentions |
NIH Brain Development Cohorts (NBDC) Data Hub (RRID:SCR_027710) | data or information resource, database | Data platform providing centralized and secure access to rich, longitudinal brain, behavioral, and genomic data from both the Adolescent Brain Cognitive Development (ABCD) and the HEALthy Brain and Child Development (HBCD) Studies. By bringing together data from both studies, the NBDC Data Hub facilitates integrative research on early life and adolescent development, helping researchers explore developmental trajectories across the lifespan. | longitudinal brain data, behavioral data, genomic data, Adolescent Brain Cognitive Development, HEALthy Brain and Child Development, | Restricted | SCR_027710 | 2026-08-10 09:38:28 | 18 | |||||||||||
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CancerMine Resource Report Resource Website 1+ mentions |
CancerMine (RRID:SCR_027748) | data or information resource, database | Text-mined and routinely updated database of drivers, oncogenes and tumor suppressors in different types of cancer. | Cancer genes, literature-mined database, drivers, oncogenes, tumor suppressors, cancer | BC Cancer Foundation and Genome British Columbia ; Vanier Canada Graduate Scholarship |
PMID:31110280 | Free, Freely available | SCR_027748 | 2026-08-10 09:38:28 | 6 | |||||||||
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Brain Initiative Cell Atlas Network Data Catalog Resource Report Resource Website |
Brain Initiative Cell Atlas Network Data Catalog (RRID:SCR_027884) | data or information resource, database | Database of complete listing of data sets generated by the Brain Initiative Cell Atlas Network (BICAN). Used to find, access, and use data from the BRAIN Initiative's efforts to map brain cell types, integrating molecular, anatomical, and functional data from mouse, primate, and human brains. Its purpose is to provide a comprehensive, open-access "parts list" of the brain, accelerate neuroscience discovery, and help understand brain disorders by offering links to raw data, visualizations, and tools for a vast array of cell types and circuits. | BICAN, US BRAIN Initiative, data from the BRAIN Initiative, map brain cell types, raw data, visualizations and tools, | is organization facet of: BRAIN Initiative Cell Atlas Network | Free, Freely available, | SCR_027884 | BICAN Data Catalog | 2026-08-10 09:38:30 | 0 | |||||||||
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BRAIN Armamentarium AAV Collection Resource Report Resource Website |
BRAIN Armamentarium AAV Collection (RRID:SCR_027885) | data or information resource, database | Collection of molecular genetic reagents to gain access to many different brain cell types. Provides scientists with advanced genetic tools, primarily AAV (Adeno-Associated Virus) vectors with cell-type specific "enhancers," to precisely target, map, monitor, and manipulate specific cell types and circuits in the brain and spinal cord. | AAV, molecular genetic reagents, brain cell types, neuroscience, studying circuits in laboratory animals and human tissue specimens, Adeno-Associated Virus vectors, brain and spinal cord, | PMID:39386678 | Free, Freely available, | SCR_027885 | 2026-08-10 09:38:33 | 0 | ||||||||||
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Collection of Alternative Methods for Regulatory Application (CAMERA) Resource Report Resource Website 1+ mentions |
Collection of Alternative Methods for Regulatory Application (CAMERA) (RRID:SCR_027893) | CAMERA | data or information resource, database | Interactive database and user interface providing online access to validated alternative methods for U.S. regulatory and other contexts of use. Central hub and unified resource of validated alternative methods that enhances accessibility to validation study reports, data, protocols / SOPs, and information on regulatory guidance.Users can filter searches by alternative method types, defined approaches, Test Method Endpoint, and regulatory guidance. | NAMSD, validated alternative methods, U.S. regulatory, validation study reports, data, protocols, SOPs, regulatory guidance, | Free, Freely available | SCR_027893 | Collection of Alternative Methods for Regulatory Application | 2026-08-10 09:38:31 | 1 | |||||||||
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polytraits Resource Report Resource Website |
polytraits (RRID:SCR_027932) | data or information resource, database | Database on biological traits of polychaetes (bristle worms, Polychaeta: Annelida). It covers information about morphological, behavioural, reproductive and larval characteristics of polychaete taxa which has been collected from the literature. | biological traits of marine polychaetes, bristle worms, Polychaeta, Annelida, morphological, behavioural, reproductive, larval, characteristics of polychaete taxa, | PMID:24855436 | Free, Freely available | SCR_027932 | 2026-08-10 09:38:33 | 0 | ||||||||||
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NINDS Common Data Elements Resource Report Resource Website 10+ mentions |
NINDS Common Data Elements (RRID:SCR_006577) | NINDS CDEs | data or information resource, database, standard specification, narrative resource | The purpose of the NINDS Common Data Elements (CDEs) Project is to standardize the collection of investigational data in order to facilitate comparison of results across studies and more effectively aggregate information into significant metadata results. The goal of the National Institute of Neurological Disorders and Stroke (NINDS) CDE Project specifically is to develop data standards for clinical research within the neurological community. Central to this Project is the creation of common definitions and data sets so that information (data) is consistently captured and recorded across studies. To harmonize data collected from clinical studies, the NINDS Office of Clinical Research is spearheading the effort to develop CDEs in neuroscience. This Web site outlines these data standards and provides accompanying tools to help investigators and research teams collect and record standardized clinical data. The Institute still encourages creativity and uniqueness by allowing investigators to independently identify and add their own critical variables. The CDEs have been identified through review of the documentation of numerous studies funded by NINDS, review of the literature and regulatory requirements, and review of other Institute''s common data efforts. Other data standards such as those of the Clinical Data Interchange Standards Consortium (CDISC), the Clinical Data Acquisition Standards Harmonization (CDASH) Initiative, ClinicalTrials.gov, the NINDS Genetics Repository, and the NIH Roadmap efforts have also been followed to ensure that the NINDS CDEs are comprehensive and as compatible as possible with those standards. CDEs now available: * General (CDEs that cross diseases) Updated Feb. 2011! * Congenital Muscular Dystrophy * Epilepsy (Updated Sept 2011) * Friedreich''s Ataxia * Parkinson''s Disease * Spinal Cord Injury * Stroke * Traumatic Brain Injury CDEs in development: * Amyotrophic Lateral Sclerosis (Public review Sept 15 through Nov 15) * Frontotemporal Dementia * Headache * Huntington''s Disease * Multiple Sclerosis * Neuromuscular Diseases ** Adult and pediatric working groups are being finalized and these groups will focus on: Duchenne Muscular Dystrophy, Facioscapulohumeral Muscular Dystrophy, Myasthenia Gravis, Myotonic Dystrophy, and Spinal Muscular Atrophy The following tools are available through this portal: * CDE Catalog - includes the universe of all CDEs. Users are able to search the full universe to isolate a subset of the CDEs (e.g., all stroke-specific CDEs, all pediatric epilepsy CDEs, etc.) and download details about those CDEs. * CRF Library - (a.k.a., Library of Case Report Form Modules and Guidelines) contains all the CRF Modules that have been created through the NINDS CDE Project as well as various guideline documents. Users are able to search the library to find CRF Modules and Guidelines of interest. * Form Builder - enables users to start the process of assembling a CRF or form by allowing them to choose the CDEs they would like to include on the form. This tool is intended to assist data managers and database developers to create data dictionaries for their study forms. | common data element, neuroscience, clinical, human, adult, pediatric, disease, disorder, data standard | has parent organization: National Institute of Neurological Disorders and Stroke | NINDS contract N01-NS-7-2372 | PMID:20583225 | nif-0000-10000 | SCR_006577 | National Institute of Neurological Disorders and Stroke CDEs, NINDS NINDS Common Data Elements: Harmonizing information. Streamlining research. | 2026-08-11 09:41:22 | 32 | ||||||
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Christopher Hogues Research Lab at the National University of Singapore Resource Report Resource Website 1+ mentions |
Christopher Hogues Research Lab at the National University of Singapore (RRID:SCR_006725) | NUS Hogue Lab | data or information resource, portal, laboratory portal, organization portal | This website is a life-sciences research wiki hosted on Google Sites and managed by Principal Investigator Christopher Hogue at the National University of Singapore''''s Department of Biological Sciences on behalf of the Mechanobiology Institute of Singapore. Mechanobiology is the study of cellular and molecular systems that either respond to or generate forces. One of the major efforts of the Mechanobiology Institute is THE MANUAL OF CELLULAR AND MOLECULAR FUNCTION, a Wiki inspired online text resource. Brief History: Between 1997-2007 the Hogue Laboratory was located at Mount Sinai Hospital in Toronto where we developed BIND and other bioinformatics resources. Dr. Hogue was affiliated with the University of Toronto as a non-tenure track Associate Professor. Facing funding and staffing cutbacks in 2005, the intellectual property amassed by the group was sold by Mount Sinai Hospital & founders to Thomson-Reuters Scientific in March of 2007. In late 2007 Dr. Hogue moved to Singapore where he is now tenure-track faculty in Southeast Asia''''s Premiere Research University - the National Unviversity of Singapore. | biochemistry, mechanics, mechanobiology, computational biology, bioinformatics, molecular assembly, structure, evolution |
is related to: BIND has parent organization: National University of Singapore; Singapore; Singapore is parent organization of: TraDES |
nif-0000-10458 | SCR_006725 | Christopher Hogue''''s Research Lab at the National University of Singapore, Hogue Laboratory at NUS | 2026-08-11 09:41:27 | 3 | ||||||||
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Dictyostelium discoideum genome database Resource Report Resource Website 100+ mentions |
Dictyostelium discoideum genome database (RRID:SCR_006643) | dictyBase, dictyBase gene name, dictyBase REF, DictyBase | biomaterial supply resource, organism supplier, material resource | Model organism database for the social amoeba Dictyostelium discoideum that provides the biomedical research community with integrated, high quality data and tools for Dictyostelium discoideum and related species. dictyBase houses the complete genome sequence, ESTs, and the entire body of literature relevant to Dictyostelium. This information is curated to provide accurate gene models and functional annotations, with the goal of fully annotating the genome to provide a ''''reference genome'''' in the Amoebozoa clade. They highlight several new features in the present update: (i) new annotations; (ii) improved interface with web 2.0 functionality; (iii) the initial steps towards a genome portal for the Amoebozoa; (iv) ortholog display; and (v) the complete integration of the Dicty Stock Center with dictyBase. The Dicty Stock Center currently holds over 1500 strains targeting over 930 different genes. There are over 100 different distinct amoebozoan species. In addition, the collection contains nearly 600 plasmids and other materials such as antibodies and cDNA libraries. The strain collection includes: * strain catalog * natural isolates * MNNG chemical mutants * tester strains for parasexual genetics * auxotroph strains * null mutants * GFP-labeled strains for cell biology * plasmid catalog The Dicty Stock Center can accept Dictyostelium strains, plasmids, and other materials relevant for research using Dictyostelium such as antibodies and cDNA or genomic libraries. | genome, sequence, est, literature, gene model, functional annotation, reference genome, gene, antibody, cdna, bacteria, dictyostelium discoideum, dictyostelium purpureum, dictyostelium fasciculatum, polysphondylium pallidium, bio.tools |
is used by: NIF Data Federation is listed by: One Mind Biospecimen Bank Listing is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: AmiGO is related to: Textpresso has parent organization: Northwestern University; Illinois; USA has parent organization: Baylor University; Texas; USA has parent organization: University of Cologne; Cologne; Germany is parent organization of: Dictyostelium Discoideum Anatomy Ontology is parent organization of: Dictyostelium Anatomy Ontology is parent organization of: dictyBase - Teaching Tools Using Dictyostelium discoideum |
NIGMS GM64426; NIGMS GM087371; NHGRI HG0022; European Union |
PMID:23172289 PMID:21087999 PMID:18974179 PMID:14681427 PMID:16381903 |
nif-0000-20974, biotools:dictybase, SCR_008149, nif-0000-02751, OMICS_03158 | https://bio.tools/dictybase | http://genome.imb-jena.de/dictyostelium/ | SCR_006643 | dictyBase gene name, dictyBase REF, Dicty, dictyBase, Dictyostelium discoideum | 2026-08-11 09:41:23 | 315 |
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