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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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University of Zurich Center for Microscopy and Image Analysis Core Facility Resource Report Resource Website 1+ mentions |
University of Zurich Center for Microscopy and Image Analysis Core Facility (RRID:SCR_019115) | ZMB | access service resource, core facility, service resource | Advanced imaging facility providing various imaging techniques in microscopy. Focus is on techniques, instrumentation and know-how in electron and light microscopy including preparation. | Superresolution microscopy, confocal microscopy, spinning disk microscopy, high throughput microscopy, widefield microscopy, lightsheet microscopy, focused ighpression beam scanning electron microscopy, array tomography scanning electron microscopy, cryo-electron microscopy, transmission electron microscopy, hure freezing, ultramicrotomy, immuno-electron microscopy, ABRF, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Zurich; Zurich; Switzerland |
Open | ABRF_1063 | https://coremarketplace.org/?FacilityID=1063 | SCR_019115 | Center for Microscopy and Image Analysis, University of Zurich Center for Microscopy and Image Analysis | 2026-08-12 10:52:19 | 2 | ||||||
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Stanford University School of Medicine Protein and Nucleic Acid Core Facility Resource Report Resource Website 1+ mentions |
Stanford University School of Medicine Protein and Nucleic Acid Core Facility (RRID:SCR_018668) | PAN | access service resource, core facility, service resource | Offers instrumentation and technical capabilities and plays significant consultative role in application of these technologies to basic science projects.Genomic Services include Oligo Synthesis,Gene Expression,Real-Time PCR,PyroSequencing,Next-Generation Sequencing (NGS),DNA Sequencing (Sanger)/Fragment AnalysisSingle Cell Genomics,RNA-DNA QC - Bioanalyzer and Fragment Analyzer QC.Protein Services include Peptide Synthesis,Mass Spectrometry,Protein Analytics - Mass Mapping/Edman Sequencing,Surface Plasmon Resonance (Biacore). | USEDit, genomics, proteomics, analytics, gene expression analysis, microarray, RT PCR, pyrosequencing, pyromark technology, DNA sequencing, oligonucleotide synthesis, protein sequencing, mass spectrometry, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: Stanford University; Stanford; California |
Open | SCR_023326, ABRF_226 | https://coremarketplace.org/?FacilityID=226, https://coremarketplace.org/RRID:SCR_018668?citation=1 | SCR_018668 | Stanford University Protein and Nucleic Acid Facility (PAN), Protein and Nucleic Acid Facility (PAN), Stanford School of Medicine Protein and Nucleic Acid Facility | 2026-08-12 10:52:11 | 1 | ||||||
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Vermont University Larner College of Medicine Microscopy Imaging Center Core Facility Resource Report Resource Website 50+ mentions |
Vermont University Larner College of Medicine Microscopy Imaging Center Core Facility (RRID:SCR_018821) | MIC | access service resource, core facility, service resource | Core provides imaging equipment including JEOL 1400 transmission electron microscope with AMT 11 megapixel digital camera,JEOL JSM 6060 scanning electron microscope with attached Oxford INCA energy dispersive spectroscopy detector for element analysis,Nikon Air HD confocal scanning laser microscope, Nikon C2 confocal scanning laser microscope, Andor Spinning Disk confocal microscope, Zeiss LSM 7 Multiphoton confocal microscope, Nikon STORM super-resolution light microscope, Olympus BX50 research microscope for transmitted light, phase contrast, and epi-fluorescence microscopy, Asylum Research MFP-3D BIO atomic force microscope, Asylum Research Cypher Environmental atomic force microscope,Arcturus XT-Ti Laser Capture Microdissector system, Olympus IX70 inverted microscope with associated Applied BioPhysics Electri Cell-Substrate Impedance Sensing (ECIS Ztheta) system, Leica VERSA 8 whole slide imager, Dell workstations containing Molecular Devices MetaMorph image analysis software for complex quantitative image analysis, Indica Labs HALO software, Improvision Volocity, MBR StereoInvestigator. | USEDit, microscopy imaging, transmission electron microscope, microscope, image analysis service, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: University of Vermont; Vermont; USA |
NCRR S10RR025498; NIH Office of the Director 1S10OD025030 |
Open | ABRF_22 | https://coremarketplace.org/?FacilityID=22 | SCR_018821 | , UVM - Microscopy Imaging Center, Vermont University Larner College of Medicine Microscopy Imaging Center, University of Vermont Larner College of Medicine Microscopy Imaging Center | 2026-08-12 10:52:14 | 60 | |||||
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University of Chicago Human Tissue Resource Center Core Facility Resource Report Resource Website 10+ mentions |
University of Chicago Human Tissue Resource Center Core Facility (RRID:SCR_019199) | access service resource, core facility, service resource | Coordinated, centralized, and dedicated program for procuring, processing, dispersing and assessing all types of biospecimens together with downstream histology services. CAP Accredited. | USEDit, biospecimen procuring, biospecimen processing, biospecimen dispersing, biospecimen assessing, ABRF, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Chicago; Illinois; USA |
NCI P30CA014599 | ABRF_1085 | https://coremarketplace.org/?FacilityID=1085 | SCR_019199 | Human Tissue Resource Center | 2026-08-12 10:52:23 | 47 | |||||||
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University of Alberta Faculty of Medicine and Dentistry Flow Cytometry Core Facility Resource Report Resource Website 10+ mentions |
University of Alberta Faculty of Medicine and Dentistry Flow Cytometry Core Facility (RRID:SCR_019195) | access service resource, core facility, service resource | Flow Cytometry Facility offers analytical flow cytometry, cell sorting and data analysis.Instruments include FACSArias, FACSCanto II, LSR-Fortessas, Attune NxT, and Amnis ImageStream mkII. | USEDit, analytical flow cytometry, cell sorting, data analysis, ABRF, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Alberta; Alberta; Canada |
Faculty of Medicine and Dentistry ; Canadian Foundation for Innovation |
ABRF_1080 | https://coremarketplace.org/?FacilityID=1080 | SCR_019195 | Faculty of Medicine and Dentistry Flow Cytometry Facility | 2026-08-12 10:52:22 | 38 | |||||||
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University of Chicago Integrated Light Microscopy Core Facility Resource Report Resource Website 50+ mentions |
University of Chicago Integrated Light Microscopy Core Facility (RRID:SCR_019197) | access service resource, core facility, service resource | Offers microscopy imaging, including bright field color and DIC, fluorescence multi-dimension,TIRFM including bleaching, ablation, FLIM and high resolution, highspeed, high sensitivity, confocal, and physiologic techniques, STED, GSD3D, lightsheet selective plane illumination and lattice lightsheet structured illumination super resolution microscopy. | USEDit, microscopy, imaging, super resolution microscopy, confocal, fluorescence, physiologic techniques, ABRF, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Chicago; Illinois; USA |
NCI P30 CA014599 | ABRF_1083 | https://coremarketplace.org/?FacilityID=1083 | SCR_019197 | Integrated Light Microscopy | 2026-08-12 10:52:13 | 61 | |||||||
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New York University School of Medicine Langone Health Cryo-Electron Microscopy Laboratory Core Facility Resource Report Resource Website 50+ mentions |
New York University School of Medicine Langone Health Cryo-Electron Microscopy Laboratory Core Facility (RRID:SCR_019202) | access service resource, core facility, service resource | Shared resource hosting advanced cryo–electron microscopes fitted with direct detectors as well as equipment for sample preparation. | USEDit, cryo electron microscope, sample preparation equipment, ABRF |
is related to: USEDit has parent organization: New York University School of Medicine; New York; USA |
Restricted | SCR_019202 | New York University School of Medicine Langone Health Cryo-Electron Microscopy Laboratory | 2026-08-12 10:52:23 | 58 | |||||||||
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Mount Desert Island Biological Laboratory Light Microscopy Core Facility Resource Report Resource Website 10+ mentions |
Mount Desert Island Biological Laboratory Light Microscopy Core Facility (RRID:SCR_019166) | LMF MDIBL | access service resource, core facility, service resource | Core provides professional scientific expertise in light microscopy. Offers access to hardware and software as well as expert guidance at any step of imaging project, from experimental design to image analysis.Comprises eight microscope systems including two laser scanning confocal microscopes including one Olympus inverted confocal microscope system (FV1000) and one Zeiss inverted confocal microscope system (LSM-980) equipped with Airy scan 2 for super resolution and 2-photon technology for in-vivo deep imaging with temperature controlled chamber. One spinning disk confocal including Nikon inverted spinning disk microscope system with incubation chamber (Eclipse Ti with Yokogawa disk CSU-W1), two Zeiss widefield microscopes for brightfield and epifluorescence illumination (Zeiss Apotome and Zeiss Colibri), three macroscopes systems to observe large samples or complete model organisms in brightfield and epifluorescence including one Olympus stereomicroscope system (MVX10) and two Zeiss stereomicroscope systems (SteREO Discovery V12), fully automated and one AxioZoom V16 , fully automated with ApoTome attachment. | USEDit, light microscopy, imaging project, image analysis, experimental design, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: Mount Desert Island Biological Laboratory |
NIGMS GM103423 | ABRF_172 | https://coremarketplace.org/?FacilityID=172 | SCR_019166 | MDIBL Light Microscopy Facility, Light Microscopy Facility MDIBL | 2026-08-12 10:52:21 | 12 | ||||||
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Marshall University School of Medicine Genomics Core Facility Resource Report Resource Website 1+ mentions |
Marshall University School of Medicine Genomics Core Facility (RRID:SCR_018885) | access service resource, core facility, service resource | Core provides services including high throughput next generation sequencing (NGS) to support whole genome, whole exome, RNA-Seq, single cell RNA-Seq, microbiome and global chromatin and methylation studies, biostatistical and bioinformatic support for NGS projects, access to DNA/RNA sequence analysis software, automated Sanger DNA sequencing, genotyping and RNA/DNA quality assessment, access to shared instrumentation such as plate readers, real time thermal cyclers, Agilent Bioanalyzers, fluorimeters, and spectrophotometers. | USEDit, genomics, next generation sequencing, biostatistical and bioinformatic support, RNA-Seq, global chromatin and methylation studies, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Marshall University Joan C. Edwards School of Medicine; West Virginia; USA |
NIGMS P20GM103434; NIGMS 1P20GM121299; NIGMS 2U54GM104942 |
ABRF_163 | https://coremarketplace.org/?FacilityID=163 | SCR_018885 | Marshall University Genomics Core Facility, MU Genomics Core Facility, Marshall University Genomics and Bioinformatics Core Facilities | 2026-08-12 10:52:14 | 6 | |||||||
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Virginia University School of Medicine Genome Analysis and Technology Core Facility Resource Report Resource Website 50+ mentions |
Virginia University School of Medicine Genome Analysis and Technology Core Facility (RRID:SCR_018883) | GATC | access service resource, core facility, service resource | Core offers instrumentation and expertise in all areas of bulk and single cell NGS genomics and transcriptomics, as well as training to access core shared instrumentations. Services include RNA Seq, CHIP Seq, ATAC Seq, Amplicon DNA Seq, 16S ribosomal gene sequencing, shot gun sequencing for small genomes and whole exome sequencing.10X Genomics resources include single cell CNV, VDJ, and 3 or 5 RNA seq as well as linked reads.Core provides real time and droplet digital PCR services most suitable for targeted gene expression, SNP genotyping and CNV discovery. | USEDit, genome analysis, NGS genomic, transcriptomics, RNA Seq, CHIP Seq, ATAC Seq, Amplicon DNA Seq, 16S ribosomal gene sequencing, shot gun sequencing, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: University of Virginia School of Medicine; Virginia; USA |
Open | ABRF_1024 | https://coremarketplace.org/?FacilityID=1024 | SCR_018883 | University of Virginia School of Medicine Genome Analysis and Technology Core Facility, UVA Genome Analysis and Technology Core, University of Virginia UVA Genome Analysis and Technology Core, Genome Analysis and Technology Core | 2026-08-12 10:52:15 | 86 | ||||||
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University of Melbourne Biological Optical Microscopy Platform (BOMP) Core Facility Resource Report Resource Website 1+ mentions |
University of Melbourne Biological Optical Microscopy Platform (BOMP) Core Facility (RRID:SCR_018888) | BOMP | access service resource, core facility, service resource | Core provides access to fluorescence microscopy equipment including Deltavision OMX Blaze Super Resolution (3D-SIM/SMLM), Leica SP8 inverted confocal, La Vision Ultramicroscope II Lightsheet Microscope,Nikon Andor WD spinning disk, Nikon A1R inverted confocal x2, Olympus FV-MPERS Multi Photon,Olympus FV3000 inverted confocal (live cell) ISS Fast-FLIM, Perkin Elmer Operetta High Content Imaging, Zeiss LSM800 upright Airyscan, Zeiss LSM880 upright Airyscan fast, Zeiss Elyra/LSM880 inverted (live cell), super resolution (Airyscan/SMLM). Staff can help with image analysis, super resolution microscopy, fluorescence lifetime imaging microscopy, high content imaging and light sheet microscopy techniques. | Fluorescence microscopy, microscope, instrument, equipment, image analysis, imaging microscopy, light sheet microscopy, imaging, ABRF, ABRF |
uses: Zeiss LSM5 PASCAL confocal laser scanning microscope system is listed by: ABRF CoreMarketplace has parent organization: University of Melbourne; Victoria; Australia |
Open | ABRF_5666 | https://coremarketplace.org/RRID:SCR_018888/?citation=1, https://microscopy.unimelb.edu.au/ | https://research.unimelb.edu.au/facilities-and-resources/research-infrastructure/biological-optical-microscopy-platform | SCR_018888 | Biological Optical Microscopy Platform | 2026-08-12 10:52:15 | 5 | |||||
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University of Alberta Faculty of Medicine and Dentistry Lipidomics Core Facility Resource Report Resource Website 10+ mentions |
University of Alberta Faculty of Medicine and Dentistry Lipidomics Core Facility (RRID:SCR_019176) | access service resource, core facility, service resource | Core assists researchers in isolating and quantifying lipids and lipid related molecules in experimental samples.Core uses high performance liquid chromatography, gas chromatography, and fast protein liquid chromatography for both qualitative and quantitative analysis of lipids and lipoproteins, as well as other compounds by special request.Not-for-profit, pay-per-use facility, with graduated fee schedule based on client affiliation. | USEDit, isolating and quantifying lipids, lipid related molecules, HPLC, gas chromatography, fast protein liquid chromatography, ABRF, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Alberta; Alberta; Canada |
restricted | ABRF_1076 | https://coremarketplace.org/?FacilityID=1076 | SCR_019176 | University of Alberta Lipidomics Core Facility, Faculty of Medicine and Dentistry Lipidomics Core | 2026-08-12 10:52:13 | 15 | |||||||
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University of California at Los Angeles Lipidomics Lab Core Facility Resource Report Resource Website 1+ mentions |
University of California at Los Angeles Lipidomics Lab Core Facility (RRID:SCR_019210) | access service resource, core facility, service resource | Offers automated sample preparation and two distinct mass spectrometry platforms with services, ranging from shotgun lipidomics to isotope labeling and mathematical modeling of lipid flux parameters.Offers data analysis and consultation services to provide users with accurate analysis of lipid metabolic parameters. | USEDit, automated sample preparation, mass spectrometry, shotgun lipidomics, isotope labeling, lipid flux parameters mathematical modeling, data analysis, lipid metabolic parameters, ABRF, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of California at Los Angeles; California; USA |
open | ABRF_1092 | https://coremarketplace.org/?FacilityID=1092 | SCR_019210 | UCLA Lipidomics Lab, University of California, Los Angeles UCLA Lipidomics Lab | 2026-08-12 10:52:22 | 2 | |||||||
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Colorado University at Boulder BioChemistry Krios Electron Microscopy Core Facility Resource Report Resource Website 1+ mentions |
Colorado University at Boulder BioChemistry Krios Electron Microscopy Core Facility (RRID:SCR_019057) | BioKEM | access service resource, core facility, service resource | Provides single particle cryo EM and cryo tomography of plunge frozen samples. Using Titan Krios G3i for high resolution data collection on Gatan K3 Direct Detection Camera facility is able to offer data collection at atomic level resolution.Facility uses Serial EM for SPA and cryo-ET data acquisition. | Electron microscopy, single particle cryon EM, cryo tomography, frozen sample, data collection, atomic level resolution, USEDit, Acquisition and Analysis for Electron Tomography, ABRF, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Colorado Boulder; Colorado; USA |
SCR_019057 | BioChemistry Krios Electron Microscopy, BioChemistry Krios Electron Microscopy facility | 2026-08-12 10:52:11 | 9 | |||||||||
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University of Colorado Boulder High Performance Computing PetaLibrary Core Facility Resource Report Resource Website 10+ mentions |
University of Colorado Boulder High Performance Computing PetaLibrary Core Facility (RRID:SCR_019299) | PetaLibrary | access service resource, core facility, service resource | Provides service to support storage, archival, and sharing of research data. Available at subsidized cost to any researcher affiliated with University of Colorado Boulder. | USEDit, ABRF, research data support storage, research data archival, research data sharing |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: University of Colorado Boulder; Colorado; USA |
NSF ACI-1532235; NSF ACI-1532236 |
Restricted | ABRF_1097 | https://coremarketplace.org/?FacilityID=1097 | SCR_019299 | Colorado University at Boulder High Performance Computing PetaLibrary Core Facility, High Performance Computing - CU PetaLibrary, University of Colorado at Boulder High Performance Computing PetaLibrary Core Facility | 2026-08-12 10:52:24 | 22 | |||||
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New York University Grossman School of Medicine Langone Health Cytometry and Cell Sorting Laboratory Core Facility Resource Report Resource Website 10+ mentions |
New York University Grossman School of Medicine Langone Health Cytometry and Cell Sorting Laboratory Core Facility (RRID:SCR_019179) | access service resource, core facility, service resource | Provides access to flow cytometry and cell sorting technologies and instruments. If your research requires cytometric analysis, instruments acquire optical measurements using different lasers to detect fluorophores with high level of precision. | flow cytometry, cell sorting, cytometric analysis, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: New York University; New York; USA |
NCI P30CA016087 | ABRF_821 | https://coremarketplace.org/?FacilityID=821 | SCR_019179 | Cytometry and Cell Sorting Laboratory | 2026-08-12 10:52:13 | 22 | |||||||
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STRUCTURE Resource Report Resource Website 1000+ mentions |
STRUCTURE (RRID:SCR_017637) | software toolkit, software resource | Software package for using multi locus genotype data to investigate population structure. Used for inferring presence of distinct populations, assigning individuals to populations, studying hybrid zones, identifying migrants and admixed individuals, and estimating population allele frequencies in situations where many individuals are migrants or admixed. Can be applied to most of commonly used genetic markers, including SNPS, microsatellites, RFLPs and Amplified Fragment Length Polymorphisms. | Multi locus genotype data, investigate population structure, bio.tools |
is listed by: Debian is listed by: bio.tools is listed by: SoftCite is related to: STRAT has parent organization: Stanford University; Stanford; California works with: Structure Harvester |
PMID:21564903 PMID:18784791 PMID:12930761 PMID:10835412 |
Free, Available for download, Freely available | SCR_021634, nlx_154662, biotools:structure, SCR_002151 | https://bio.tools/structure, http://pritch.bsd.uchicago.edu/structure.html, | SCR_017637 | structure, Structure | 2026-08-12 10:51:50 | 4177 | ||||||
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Racon Resource Report Resource Website 100+ mentions |
Racon (RRID:SCR_017642) | data processing software, software resource, software application | Software tool as de novo genome assembly from long uncorrected reads. Used to correct raw contigs generated by rapid assembly methods which do not include consensus step. Supports data produced by Pacific Biosciences and Oxford Nanopore Technologies. | Assembly, de novo, long, uncorrected, read, raw, contig, consensus, step, data, sequence, bio.tools |
is listed by: Debian is listed by: bio.tools is listed by: OMICtools |
Croatian Science Foundation ; Croatian Academy of Sciences and Arts ; A*STAR ; Singapore |
DOI:10.1101/068122 | Free, Available for download, Freely available | OMICS_25714, biotools:Racon, BioTools:Racon | https://bio.tools/Racon, https://sources.debian.org/src/racon/ | SCR_017642 | 2026-08-12 10:51:52 | 177 | ||||||
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TransDecoder Resource Report Resource Website 1000+ mentions |
TransDecoder (RRID:SCR_017647) | standalone software, data processing software, software resource, software application | Software tool to identify candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to genome using Tophat and Cufflinks.Starts from FASTA or GFF file. Can scan and retain open reading frames (ORFs) for homology to known proteins by using BlastP or Pfam search and incorporate results into obtained selection. Predictions can then be visualized by using genome browser such as IGV. | Identify, candidate, coding, region, transcript, sequence, de novo, RNAseq, assembly, alignment, genome, open, reading, frame, homology, protein, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:transDecoder, OMICS_10852 | https://bio.tools/TransDecoder, https://sources.debian.org/src/transdecoder/, https://github.com/TransDecoder/TransDecoder/wiki | SCR_017647 | , Find Coding Regions Within Transcripts | 2026-08-12 10:51:48 | 1572 | |||||||
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Apache Spark Resource Report Resource Website 10+ mentions |
Apache Spark (RRID:SCR_016557) | data processing software, data analytics software, software resource, software application | Software tool as a unified analytics engine for large scale data processing. An open source distributed general purpose cluster computing framework. | unified, analytics, engine, large, scale, data, processing |
is related to: VariantSpark is related to: spark-xml is related to: spark-xml-utils is related to: SparkFHE has parent organization: University of California at Berkeley; Berkeley; USA |
DOI:10.1145/2934664 | Free, Available for download, Freely available | SCR_016557 | 2026-08-12 10:51:32 | 43 |
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