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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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DELSA Resource Report Resource Website 1+ mentions |
DELSA (RRID:SCR_006231) | DELSA | data or information resource, portal, organization portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 1, 2022. Organization whose mission is to build and promote a sustainable ecosystem of professional societies, funding agencies, foundations, companies, and citizens together with life science researchers and innovators in computing, infrastructure and analysis with the expressed goal of translating new discoveries into tools, resources and products. | life science, collective innovation, framework, data sharing, science, education, environment, energy, ecology, food, healthcare, transdiscipline, collaboration | NSF | PMID:22523528 | THIS RESOURCE IS NO LONGER IN SERVICE. | nlx_151790 | SCR_006231 | Data-Enabled Life Sciences Alliance, DELSAglobal, DELSA: Data-Enabled Life Sciences Alliance, DELSA Global, Data-enabled Life Science Initiative | 2026-08-11 09:41:17 | 2 | ||||||
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NeuroMab Resource Report Resource Website 1000+ mentions |
NeuroMab (RRID:SCR_003086) | NeuroMab | data or information resource, portal, organization portal | A national mouse monoclonal antibody generating resource for biochemical and immunohistochemical applications in mammalian brain. NeuroMabs are generated from mice immunized with synthetic and recombinant immunogens corresponding to components of the neuronal proteome as predicted from genomic and other large-scale cloning efforts. Comprehensive biochemical and immunohistochemical analyses of human, primate and non-primate mammalian brain are incorporated into the initial NeuroMab screening procedure. This yields a subset of mouse mAbs that are optimized for use in brain (i.e. NeuroMabs): for immunocytochemical-based imaging studies of protein localization in adult, developing and pathological brain samples, for biochemical analyses of subunit composition and post-translational modifications of native brain proteins, and for proteomic analyses of native brain protein networks. The NeuroMab facility was initially funded with a five-year U24 cooperative grant from NINDS and NIMH. The initial goal of the facility for this funding period is to generate a library of novel NeuroMabs against neuronal proteins, initially focusing on membrane proteins (receptors/channels/transporters), synaptic proteins, other neuronal signaling molecules, and proteins with established links to disease states. The scope of the facility was expanded with supplements from the NIH Blueprint for Neuroscience Research to include neurodevelopmental targets, the NIH Roadmap for Medical Research to include epigenetics targets, and NIH Office of Rare Diseases Research to include rare disease targets. These NeuroMabs will then be produced on a large scale and made available to the neuroscience research community on an inexpensive basis as tissue culture supernatants or purified immunoglobulin by Antibodies Inc. The UC Davis/NIH NeuroMab Facility makes NeuroMabs available directly to end users and is unable to accommodate sales to distributors for third party distribution. Note, NeuroMab antibodies are now offered through antibodiesinc. | antibody, brain, channel, disease-related protein, k channel subunit, mab, mammalian, membrane protein, monoclonal antibody, mouse, neuronal monoclonal antibody, neuronal protein, neuronal signaling molecule, reagent, receptor, research reagent, synaptic protein, transporter |
is used by: NIF Data Federation is listed by: OMICtools has parent organization: University of California at Davis; California; USA |
NINDS ; NIMH ; NIH Blueprint for Neuroscience Research ; NIH Roadmap for Medical Research ; Office of Rare Diseases Research ; Antibodies Inc. |
Free, Freely available | grid.482686.6, nif-0000-00175 | https://ror.org/00fyrp007 | SCR_003086 | UCDavis/NIH NeuroMab Facility, antibodies.inc, antibodiesinc.com, antibodiesinc | 2026-08-11 09:40:42 | 1859 | |||||
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National Stem Cell Bank Resource Report Resource Website 1+ mentions |
National Stem Cell Bank (RRID:SCR_004725) | NSCB | biomaterial supply resource, cell repository, material resource |
THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 17, 2011. The US government contract funding the National Stem Cell Bank (NSCB) ended on February 28, 2010. A repository for the pluripotent stem cells lines listed on the NIH Human Pluripotent Stem Cell Registry. These cells were derived prior to August 2001 using excess IVF embryos and were eligible for use in federally funded research under previous presidential policy. The eligibility of these lines will not be known until the NIH issues final stem cell guidelines in July 2009. The goal of the NSCB is to grow, characterize and distribute the cell lines listed on the registry, and to provide comprehensive technical support to stem cell researchers around the world. Starting February 2, 2010, these materials can be ordered from the Wisconsin International Stem Cell Bank (the WISC Bank) operated by WiCell Research Institute, for delivery after February 28, 2010. |
embryonic, stem cell, pluripotent stem cell line, cell line, frozen, cell |
is listed by: One Mind Biospecimen Bank Listing is related to: NIH Human Pluripotent Stem Cell Registry has parent organization: WiCell Research Institute |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_72054 | SCR_004725 | 2026-08-11 09:40:59 | 2 | ||||||||
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Simons Simplex Collection Resource Report Resource Website 1+ mentions |
Simons Simplex Collection (RRID:SCR_004644) | SSC | biomaterial supply resource, cell repository, material resource | Repository of genetic samples from approximately 3,000 families, each of which has one child affected with an Autism Spectrum Disorder (ASD) and parents unaffected with ASD. A central database characterizing all of the study subjects is available to any qualified researcher and biospecimens are freely available to SFARI grant holders, and to other researchers on a modest fee-for-use basis. Each genetic sample will have an associated collection of data that provides a precise characterization of the individual (phenotype). Rigorous phenotyping will maximize the value of the resource for a wide variety of future research projects into the causes and mechanisms of autism. The Simons Simplex Collection is operated by SFARI in collaboration with twelve university-affiliated research clinics. | phenotype, genetic, cell line, fibroblast, dna, plasma |
is listed by: One Mind Biospecimen Bank Listing has parent organization: SFARI - Simons Foundation Autism Research Initiative |
Autism, Autism Spectrum Disorder, Unaffected parent | Public: Central database is available to any qualified researcher and biospecimens are freely available to SFARI grant holders, And to other researchers on a modest fee-for-use basis. | nlx_64171 | https://sfari.org/simons-simplex-collection | SCR_004644 | 2026-08-11 09:41:06 | 2 | ||||||
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CEI Science and Technology Network Resource Report Resource Website |
CEI Science and Technology Network (RRID:SCR_005338) | S&TN | funding resource, regional funding resource | The CEI Science & Technology Network (S&TN), launched at the beginning of 2004, is composed of sevenTrieste-based research centres and their partners in the CEI region. With the aim to strengthen scientific and technological cooperation, the S&TN provides financial support for the organization of seminars, conferences, workshops and training courses. Young scientists from CEI countries, especially non-EU member States, are offered the opportunity to attend such activities and carry out scientific research on various topics in one of the seven Lead Institutions (LIs). The area of cooperation of each Lead Institution is separately defined in a three-year Protocol complemented by an annual Work Programme. During 2004-2009, the Network''s Lead Institutions implemented a number of activities, some of which in partnership with other institutions from CEI countries. This cooperation started up the Secondary Network whose further enhancement will be the main challenge in the future years. The CEI Research Fellowship Programme The CEI Research Fellowship Programme was established in 2005 to enable mobility across the CEI region by giving selected scientists the possibility of carrying out research in one of the Network''s Lead Institutions. In the time-frame 2005 - 2009, the request for fellowships has constantly increased and witnessed the effectiveness of the Programme. Taking this into account, in 2008 the CEI-ES started to explore EU funding opportunities in order to develop its Research Fellowship Programme. A joint proposal named CERES (CEI Research Fellowship Programme) was submitted to the European Commission under the Seventh Framework Programme for Research and Technological Development (FP7). CERES was approved and is currently under implementation. EU Funding opportunities for the CEI Science & Technology Network Following the successful experience of CERES, the CEI-ES, along with the Network''s Lead Institutions, will continue to look into funding opportunities offered by the EU with the ultimate aim to support mobility of researchers across the CEI area and promote significant progress in the S&T sector. | award, fellowship, travel award | nlx_144395 | SCR_005338 | CEI Science & Technology Network, CEI Science Technology Network | 2026-08-11 09:41:06 | 0 | |||||||||
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Allen Institute for Brain Science Sleep Study Resource Report Resource Website 1+ mentions |
Allen Institute for Brain Science Sleep Study (RRID:SCR_002983) | Allen Sleep Study | data or information resource, atlas, data set | Collection of gene expression data in mouse brain for five different conditions of sleep and wakefulness to understand sleep deprivation and dynamic changes underlying sleep and wake cycles. Platform to generate cellular resolution expression data. | gene, expression, brain, data, image, mice, microarray, nissl, sleep, deprivation, wake, cycle, wakefulness, neuroanatomy |
is listed by: 3DVC has parent organization: Allen Institute for Brain Science |
Free, Public | nif-0000-00507 | SCR_002983 | Sleep Study | 2026-08-11 09:40:39 | 2 | |||||||
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Swiss Biobank Resource Report Resource Website |
Swiss Biobank (RRID:SCR_004516) | Swiss Biobank | biomaterial supply resource, cell repository, material resource | With expertise in the preservation of biological specimens, Swiss Biobank is a biobank of cell therapy products (stem cells, progenitor). Strategically located in Suisse Romande, the center is accessible 7J/7J, 365 days / year. The laboratories and technology platforms are tailored to international standards. Service is prompt, courteous, and responsive to your needs. The first opportunity to harvest adult stem cells, which is the only type at Swiss Biobank, occurs just after the birth of a baby. The umbilical cord blood and placenta are rich in hematopoietic stem cells and can regenerate all cells in the bloodstream. The cord and placenta tissues themselves contain mesenchymal cells that can be used for the regeneration of connective tissue. The standardized procedures for collecting cord blood units are made ����??����??by the medical staff of the hospital / clinic according to international standards. The sample is transported by a courier Swiss Medical Biobank in which it is prepared and cryo-preserved by qualified personnel within 24 hours. In the case of public biobanking, cells, tissues, organs are donated and can be used with consent of the donor, a third person for transplantation, or as part of clinical research. The HLA (Human Leukocyte Antigen) is a group of proteins on the cell surface, and specific to each individual. This allows the immune system to distinguish our own cells for foreign elements (pathogens) that are likely to be attacked. Histocompatibility between the donor and recipient is of primary importance in organ transplantation, tissues and / or cells, to minimize the chances of rejection. There is one chance in four that two siblings have the same HLA code. | stem cell, progenitor cell, cell, adult stem cell, umbilical cord blood, tissue, organ, frozen, cryo-preserved, placenta, umbilical cord, blood, transplantation, research | is listed by: One Mind Biospecimen Bank Listing | Birth of baby | nlx_50970 | http://www.swissbiobank.com/ | SCR_004516 | swissbiobank.com | 2026-08-11 09:40:57 | 0 | ||||||
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Central England Haemato-Oncology Research Biobank Resource Report Resource Website |
Central England Haemato-Oncology Research Biobank (RRID:SCR_004637) | CEHRB | biomaterial supply resource, cell repository, material resource | The Central England Haemato-Oncology Research Biobank stores excess material from oncology samples referred for diagnostic testing and disease monitoring at the West Midlands Regional Genetics Laboratory (WMRGL). The bank is housed within the WMRGL. Types of material stored include viable cells, fixed cell suspensions, DNA, RNA / cDNA, and plasma. The material is made available to all cancer research groups both locally and nationally. Excess sample (mainly from blood and bone marrow) is stored from diagnostic patient material and from samples received throughout their disease course. The WMRGL serves a population of about 5.5 million and is the largest UK NHS genetic Lab. Due to the large patient population CEHRB is able to collate sufficient research material from all classifications of neoplastic haematological disorders including those that are rare. | rare, ontology, hematology, tumor, oncology | is listed by: One Mind Biospecimen Bank Listing | Cancer, Neoplastic hematological disorder | Public: The material is made available to all cancer research groups both locally and nationally. | nlx_63387 | http://www.bwhct.nhs.uk/genetics-index/reglab_oncology.htm, http://www.bwhct.nhs.uk/genetics-index/central_england_haemato-oncology_research_biobank.htm | SCR_004637 | Central England Haemato-Oncology Research Biobank (CEHRB) | 2026-08-11 09:40:58 | 0 | |||||
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Pediatric Cancer Data Commons Resource Report Resource Website 1+ mentions |
Pediatric Cancer Data Commons (RRID:SCR_022369) | PCDC | data or information resource, topical portal, portal, disease-related portal | PCDC brings together clinical, genomic, and imaging data from institutions around the world to transform pediatric cancer research and outcomes. Headquartered at University of Chicago, PCDC works with international leaders in pediatric cancers and National Cancer Institute to develop and apply uniform data standards that facilitate collection, combination, and analysis of data from many different sources. PCDC Consortium developes common core data dictionary and common governance structure spanning pediatric cancers neuroblastoma, soft tissue sarcoma, acute myeloid leukemia, acute lymphoblastic leukemia, germ cell tumors, bone tumors, and Hodgkin lymphoma to enable innovative cross disease research as well as set standard for future cancer data commons endeavors. | pediatric cancer, clinical data, genomic data, imaging data, uniform data standards, common core data dictionary, common governance structure, | is related to: University of Chicago; Illinois; USA | pediatric cancer, neuroblastoma, soft tissue sarcoma, acute myeloid leukemia, acute lymphoblastic leukemia, germ cell tumors, bone tumors, Hodgkin lymphoma | Free, Freely available | SCR_022369 | 2026-08-11 09:44:22 | 2 | ||||||||
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University of Chicago Digestive Diseases Research Core Center Resource Report Resource Website 1+ mentions |
University of Chicago Digestive Diseases Research Core Center (RRID:SCR_015601) | DDRCC | data or information resource, training resource, portal, organization portal | Center whose goals include fostering collaboration among basic and clinical investigators, facilitating the use of new technologies in the study of treatment of digestive diseases, and providing education and training for improved treatment and diagnosis. | DDRCC, digestive disease, uchicago |
is listed by: NIDDK Information Network (dkNET) is parent organization of: University of Chicago Digestive Diseases Research Core Center Integrated Translational Research Core is parent organization of: University of Chicago Digestive Diseases Research Core Center Administrative Core is parent organization of: University of Chicago Digestive Diseases Research Core Center Host-Microbe Core is parent organization of: University of Chicago Digestive Diseases Research Core Center Tissue and Cell Imaging Core is parent organization of: University of Chicago Digestive Diseases Research Core Center Tissue Engineering and Cell Models Core has organization facet: University of Chicago Digestive Diseases Research Core Center Administrative Core has organization facet: University of Chicago Digestive Diseases Research Core Center Integrated Translational Research Core has organization facet: University of Chicago Digestive Diseases Research Core Center Tissue Engineering and Cell Models Core has organization facet: University of Chicago Digestive Diseases Research Core Center Host-Microbe Core has organization facet: University of Chicago Digestive Diseases Research Core Center Tissue and Cell Imaging Core is organization facet of: Digestive Disease Centers |
digestive disease | NIDDK P30 DK042086 | Available to the research community | SCR_015601 | 2026-08-11 09:43:07 | 1 | |||||||
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DistillerSR Resource Report Resource Website 10+ mentions |
DistillerSR (RRID:SCR_023078) | data management software, software resource, software application | Literature review software by DistillerSR Inc. Automates management of literature collection, screening, and assessment using AI and intelligent workflows. From systematic literature review to rapid review to living review, makes any project simpler to manage and configure to produce transparent, audit-ready, and compliant results. | DistillerSR Inc., management of literature collection, screening, and assessment, project to manage, literature review software | Restricted | SCR_023078 | 2026-08-11 09:44:24 | 11 | |||||||||||
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Musculoskeletal Knowledge Portal Resource Report Resource Website 10+ mentions |
Musculoskeletal Knowledge Portal (RRID:SCR_023171) | MSK-KP | data or information resource, topical portal, portal, disease-related portal | Portal enables browsing, searching, and analysis of human genetic and genomic information linked to musculoskeletal traits and diseases, while protecting the integrity and confidentiality of underlying data. | genomic data mining, human genetic data, genomic information, musculoskeletal traits and diseases data, DRKB | musculoskeletal disease | NIH AR085003 | PMID:34686856 | Free, Freely available | https://msk.hugeamp.org/ | SCR_023171 | 2026-08-11 09:44:30 | 26 | ||||||
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Laboratory of Systems Pharmacology program Resource Report Resource Website |
Laboratory of Systems Pharmacology program (RRID:SCR_022873) | LSP | data or information resource, portal, laboratory portal, organization portal | Research and education program in Harvard Program in Therapeutic Science at Harvard Medical School to advance science and to develop technology needed to accelerate invention of new medicines and personalization of patient care. Used to study molecular causes of disease, ways drugs exert their therapeutic and adverse effects, design and interpretation of clinical trials. | Harvard Program, Therapeutic Science, new medicines development, personalized patient care | has parent organization: Harvard Medical School; Massachusetts; USA | Free, Freely available | SCR_022873 | 2026-08-11 09:44:22 | 0 | |||||||||
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Natural Scenes Dataset Resource Report Resource Website 10+ mentions |
Natural Scenes Dataset (RRID:SCR_023648) | NSD | data or information resource, topical portal, portal, data set | Portal for large scale fMRI dataset conducted at ultra high field strength at Center of Magnetic Resonance Research at University of Minnesota. Dataset consists of whole brain, high resolution fMRI measurements of healthy adult subjects while they viewed thousands of color natural scenes over course of scan sessions. While viewing these images, subjects were engaged in continuous recognition task in which they reported whether they had seen each given image at any point in experiment. These data constitute massive benchmark dataset for computational models of visual representation and cognition, and can support wide range of scientific inquiry. | Natural scenes, vision, fMRI measurements, fMRI dataset, whole brain, healthy adult subjects, images, visual representation and cognition, benchmark, training data | has parent organization: University of Minnesota Twin Cities; Minnesota; USA | PMID:34916659 | Free,Freely available | https://github.com/cvnlab/nsdcode/ | SCR_023648 | 2026-08-11 09:44:41 | 44 | |||||||
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Global Alzheimers Association Interaction Network Resource Report Resource Website 10+ mentions |
Global Alzheimers Association Interaction Network (RRID:SCR_023699) | GAAIN | data or information resource, topical portal, portal, disease-related portal | Open access integrated research platform, which links scientists, shared data, and analysis tools to accelerate Alzheimer’s disease research, disease preventions, treatments and cure. Unites diverse and geographically distributed network of data partners to foster cohort discovery, collaboration and sharing. Researchers can discover clinical, genetic, imaging and other data collected across many independent studies. | USC Mark and Mary Stevens Neuroimaging and Informatics Institute, Alzheimer’s disease research, disease preventions, treatments and cure, network of data partners, cohort discovery, collaboration and sharing, clinical data, genetic data, imaging data, Alzheimer data discovery, | has parent organization: University of Southern California; Los Angeles; USA | Alzheimer’s disease | Alzheimer Association | Free, Freely available | SCR_023699 | 2026-08-11 09:44:37 | 30 | |||||||
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TIGER Data Portal Resource Report Resource Website 10+ mentions |
TIGER Data Portal (RRID:SCR_023626) | data or information resource, topical portal, portal, disease-related portal | Resource enables integrative exploration of genetic and epigenetic basis of development of Type 2 Diabetes, together with other associated functional, molecular and clinical data, centered in biology and role of pancreatic beta cells.The gene expression regulatory variation landscape of human pancreatic islets. | Type 2 Diabetes, genetic and epigenetic, functional data, molecular data, clinical data, pancreatic beta cells. | is related to: T2DSystems | Type 2 Diabetes | European Union Horizon 2020 ; Spanish government ; Swiss State Secretariat for Education‚ Research and Innovation ; American Diabetes Association Innovative and Clinical Translational Award ; Research England ; Wellcome Trust ; NIDDK U01 DK105535; NIDDK U01 DK085545 |
PMID:34644572 | SCR_023626 | Translational Human Pancreatic Islet Genotype Tissue-Expression Resource | 2026-08-11 09:44:28 | 23 | |||||||
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Enroll-HD Resource Report Resource Website 10+ mentions |
Enroll-HD (RRID:SCR_023300) | data or information resource, topical portal, portal, disease-related portal | Clinical research platform and longitudinal observational study for Huntington’s Disease families intended to accelerate progress towards therapeutics. Collaboration between Huntington’s disease families, clinicians, and researchers to accelerate progress toward effective treatments. | Clinical Research, clinical trails, Huntington’s Disease families, therapeutics, effective treatments, | Huntington’s disease | Cure HD Initiative Foundation | Free, Freely available | SCR_023300 | 2026-08-11 09:44:35 | 13 | |||||||||
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PROFisis Resource Report Resource Website |
PROFisis (RRID:SCR_024179) | simulation software, software resource, software application | Software tool that identifies interacting residues from sequence alone. Developed using transient protein�protein interfaces from complexes of experimentally known 3D structures. | identifies interacting residues from sequence alone, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_13706 | https://sources.debian.org/src/profisis/ | SCR_024179 | profisis | 2026-08-11 09:44:34 | 0 | |||||||
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CONTRAfold Resource Report Resource Website 1+ mentions |
CONTRAfold (RRID:SCR_023994) | CONTRAfold | simulation software, software resource, software application | Software novel secondary structure prediction method based on conditional log-linear models, a flexible class of probabilistic models which generalize upon SCFGs by using discriminative training and feature-rich scoring. Used for sequence prediction. | sequence prediction, | is listed by: Debian | PMID:16873527 | Free, Available for download, Freely available | OMICS_03452 | https://sources.debian.org/src/CONTRAfold/ | SCR_023994 | CONditional TRAining for RNA Secondary Structure Prediction, contrafold | 2026-08-11 09:44:40 | 2 | |||||
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Metastudent Resource Report Resource Website |
Metastudent (RRID:SCR_024110) | simulation software, software resource, software application | Software tool to predict gene ontology terms for protein sequences through homology. | predict gene ontology terms, protein sequences, through homology, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_20187 | https://sources.debian.org/src/metastudent/, https://sources.debian.org/src/metastudent-data/ | SCR_024110 | metastudent-data, metastudent | 2026-08-11 09:44:32 | 0 |
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