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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
RTDT Resource Report Resource Website 10+ mentions |
RTDT (RRID:SCR_007336) | RTDT | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, matlab, c++ | is listed by: Genetic Analysis Software | nlx_154579 | SCR_007336 | Robust Transmission/Disequilibrium Test | 2026-08-04 09:41:49 | 17 | ||||||||
|
TKMAP Resource Report Resource Website |
TKMAP (RRID:SCR_007457) | TKMAP | software application, software resource | Software program for drawing genetic maps (entry from Genetic Analysis Software) | gene, genetic, genomic, based on biotk which is based on tcl/tk | is listed by: Genetic Analysis Software | nlx_154026 | SCR_007457 | 2026-08-04 09:41:51 | 0 | |||||||||
|
GENEPI.JAR Resource Report Resource Website |
GENEPI.JAR (RRID:SCR_008782) | GENEPI.JAR | software application, software resource | A set of Java programs for genetic epidemiology analysis (entry from Genetic Analysis Software) | gene, genetic, genomic, java, web-based | is listed by: Genetic Analysis Software | nlx_154336 | http://bioinformatics.med.utah.edu/~alun/software/index.html | SCR_008782 | JPSGCS | 2026-08-04 09:42:14 | 0 | |||||||
|
SNPHARVESTER Resource Report Resource Website 1+ mentions |
SNPHARVESTER (RRID:SCR_008536) | SNPHARVESTER | software application, software resource | Software tool for detecting epistatic interactions in genome-wide association studies (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154643 | SCR_008536 | 2026-08-04 09:42:10 | 6 | |||||||||
|
BDGEN Resource Report Resource Website 1+ mentions |
BDGEN (RRID:SCR_008811) | BDGEN | software application, software resource | Powerful database software with improvement tools for paternity testing, database searching (like CODIS) and NRC II recommendations based formulae for investigating likelyhood ratios in putative contributors to crime evidences. Additional genetic population parameters estimations are added in this version. Only spanish version available. (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows | is listed by: Genetic Analysis Software | nlx_154237 | SCR_008811 | 2026-08-04 09:42:13 | 1 | |||||||||
|
EASYPOP Resource Report Resource Website 10+ mentions |
EASYPOP (RRID:SCR_008961) | EASYPOP | software application, software resource | Software application allowing to simulate population genetics datasets. It allows generating genetic data for haploid, diploid, and haplodiploid organisms under a variety of mating systems. It includes various migration and mutation models. Output can be generated for the FSTAT, GENEPOP, and ARLEQUIN genetic analysis packages. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-windows, (95/98/nt/2000/xp), macos, (x) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154012 | http://www.unil.ch/dee/page36926_fr.html | SCR_008961 | 2026-08-04 09:42:15 | 16 | |||||||
|
CARTHAGENE Resource Report Resource Website 10+ mentions |
CARTHAGENE (RRID:SCR_009013) | CARTHAGENE | software application, software resource | A genetic/radiation hybrid mapping software that looks for multiple populations maximum likelihood consensus maps using a fast EM algorithm for maximum likelihood estimation and powerful ordering algorithms inspired from TSP (Traveling Salesman Problem) technology. It can handle large data sets made up of different populations (either F2 backcross, recombinant inbred lines, F2 intercross, phase known outbreds, haploid/diploid radiation hybrids). It can also exploit existing syntenic relationships between the organism mapped and a reference (sequenced) organism for accurate dense RH mapping. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, tcl/tk, ms-windows, unix, solaris, linux, sources are available for other operating systems (gpl/qpl). | is listed by: Genetic Analysis Software | nlx_154008 | SCR_009013 | 2026-08-04 09:42:16 | 42 | |||||||||
|
SNP-HWE Resource Report Resource Website 1+ mentions |
SNP-HWE (RRID:SCR_008555) | SNP-HWE | software application, software resource | Software application for a fast exact Hardy-Weinberg Equilibrium test for SNPs (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, c, c++, r | is listed by: Genetic Analysis Software | nlx_154645 | SCR_008555 | 2026-08-04 09:42:09 | 4 | |||||||||
|
PEDPEEL Resource Report Resource Website |
PEDPEEL (RRID:SCR_008436) | PEDPEEL | software application, software resource | Software program that prepares pedigree data for calculation of Elston-Stewarts'' likelihood function. It finds an optimal way to peel a pedigree and returns text file containing 7 description arrays (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154524, biotools:pedpeel | https://bio.tools/pedpeel | SCR_008436 | 2026-08-04 09:42:07 | 0 | ||||||||
|
GENOME Resource Report Resource Website 50+ mentions |
GENOME (RRID:SCR_008949) | GENOME | software application, software resource | Software application to simulate sequences drawn from a population under the Wright-Fisher neutral model. The purpose of this program is to simulate sequences on the whole genome scale within practical time. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, solaris, linux, ms-windows | is listed by: Genetic Analysis Software | nlx_154347 | SCR_008949 | 2026-08-04 09:42:16 | 63 | |||||||||
|
ET-TDT Resource Report Resource Website |
ET-TDT (RRID:SCR_007657) | ET-TDT | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-dos | is listed by: Genetic Analysis Software | nlx_154304 | SCR_007657 | Evolutionary Tree - Transmission Disequilibrium Test | 2026-08-04 09:41:57 | 0 | ||||||||
|
TAGSNP Resource Report Resource Website 50+ mentions |
TAGSNP (RRID:SCR_008623) | TAGSNP | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran90 | is listed by: Genetic Analysis Software | nlx_154671 | SCR_008623 | 2026-08-04 09:42:11 | 69 | |||||||||
|
BEAM Resource Report Resource Website 500+ mentions |
BEAM (RRID:SCR_007258) | BEAM | software application, software resource | Software application that treats the disease-associated markers and their interactions via a bayesian partitioning model and computes, via Markov chain Monte Carlo, the posterior probability that each marker set is associated with the disease. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, linux, dos | is listed by: Genetic Analysis Software | nlx_154240 | SCR_007258 | Bayesian Epistasis Association Mapping | 2026-08-04 09:41:49 | 651 | ||||||||
|
2DMAP Resource Report Resource Website |
2DMAP (RRID:SCR_009036) | 2DMAP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application for constructing 2-d crossover-based map. | gene, genetic, genomic, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154001 | SCR_009036 | 2026-08-04 09:42:16 | 0 | ||||||||
|
LDSELECT Resource Report Resource Website 10+ mentions |
LDSELECT (RRID:SCR_007010) | LDSELECT | software application, software resource | Software program that analyzes patterns of linkage disequilibrium (LD) between polymorphic sites in a locus, and bins the SNPs on the basis of a threshold level of LD as measured by r2. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
THIS RESOURCE IS NO LONGER IN SERVICE | biotools:ld_select, nlx_154426 | https://bio.tools/ld_select | SCR_007010 | 2026-08-04 09:41:44 | 15 | |||||||
|
ADMIXMAP Resource Report Resource Website 10+ mentions |
ADMIXMAP (RRID:SCR_009035) | ADMIXMAP | software application, software resource | General-purpose program for modelling admixture, using marker genotypes and trait data on a sample of individuals from an admixed population (such as African-Americans), where the markers have been chosen to have extreme differentials in allele frequencies between two or more of the ancestral populations between which admixture has occurred. The main difference between ADMIXMAP and classical programs for estimation of admixture such as ADMIX is that ADMIXMAP is based on a multilevel model for the distribution of individual admixture in the population and the stochastic variation of ancestry on hybrid chromosomes. This makes it possible to model the associations of ancestry between linked marker loci, and the association of a trait with individual admixture or with ancestry at a linked marker locus. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, linux, ms-windows, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_153999, biotools:admixmap | https://bio.tools/admixmap | SCR_009035 | Admixture mapping | 2026-08-04 09:42:17 | 19 | |||||||
|
INTEGRAYEDMAP Resource Report Resource Website |
INTEGRAYEDMAP (RRID:SCR_007489) | INTEGRAYEDMAP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A web application and database schema for storing and interactively displaying genetic map data. | gene, genetic, genomic, ms-windows, (nt/2000/xp profession/), require either, oracle rdbms, or, mysql | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154099 | ftp://cggc.agtec.uga.edu/IntegratedMap/ | SCR_007489 | 2026-08-04 09:41:51 | 0 | |||||||
|
HAPLO 2 Resource Report Resource Website 1+ mentions |
HAPLO 2 (RRID:SCR_009059) | HAPLO 2 | software application, software resource | Software application that estimates frequencies of multi-site haplotypes using the EM algorithm (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, dec vax | is listed by: Genetic Analysis Software | nlx_154040 | SCR_009059 | 2026-08-04 09:42:17 | 1 | |||||||||
|
UNPHASED Resource Report Resource Website 100+ mentions |
UNPHASED (RRID:SCR_009056) | UNPHASED | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A suite of programs for association analysis of multilocus haplotypes from unphased genotype data. These include TDTPHASE for case-parent trios, COCAPHASE for case/control data, QTPHASE for quantitative traits in unrelateds, PDTPHASE for general pedigrees, and QPDTPHASE for quantitative traits in general pedigrees. Features include global and individual haplotype tests, main effects and conditional tests, grouping of rare haplotypes, pairwise comparisons of haplotype risk, flexible permutation procedures and calculation of LD measures. | gene, genetic, genomic, c++, java, unix, solaris, linux, ms-windows | is listed by: Genetic Analysis Software | PMID:10739137 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154037 | http://www.mrc-bsu.cam.ac.uk/personal/frank/software/unphased/ | SCR_009056 | 2026-08-04 09:42:17 | 125 | ||||||
|
POWER Resource Report Resource Website 500+ mentions |
POWER (RRID:SCR_009057) | POWER | software application, software resource | Windows-based program for computation of sample size and power for binary outcome studies (case-control and cohort studies) based on a logistic-like regression model with one covariate or two covariates (e.g., gene-exposure interactions). (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-window | is listed by: Genetic Analysis Software | nlx_154038 | http://dceg.cancer.gov/POWER/ | SCR_009057 | 2026-08-04 09:42:18 | 584 |
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