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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Autoaligner Resource Report Resource Website 10+ mentions |
Autoaligner (RRID:SCR_007355) | data processing software, data analysis software, software resource, software application | Microtomy is a standard technique used for 2D microscopy, but it can also provide the foundation for 3D analysis using AutoAligner. AutoAligner reads a stack of serial sections and automatically aligns the single images, building up a 3D space that can be explored using Imaris. Each image is aligned in translation and rotation relative to its precursor image in the sequence. In addition to a fully automated mode, AutoAligner also provides manual control for neighboring images that are too different from each other for automatic alignment. The visual alignment tool uses fast display techniques for aligning images in real time. | nif-0000-00266 | SCR_007355 | 2026-08-12 10:49:42 | 25 | ||||||||||||
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SUNY Stony Brook Department of Neurology Stony Brook NY Resource Report Resource Website |
SUNY Stony Brook Department of Neurology Stony Brook NY (RRID:SCR_007479) | data or information resource, department portal, portal, organization portal | The Department of Neurology has a commitment to teaching, clinical care, and research. They include divisions of Clinical Neurophysiology (with training in EEG and EMG, including inpatient and outpatient monitoring facilities, intraoperative monitoring, and access to a sleep laboratory), Neuropsychology (both adult and pediatrics), Child Neurology (including special interest groups in Epilepsy, Developmental Disabilities, Pediatric AIDS, and Autism), and Vascular Neurology (with an accredited training program, board certified faculty, close cooperation with Vascular Surgery, Interventional Radiology, and Cardiology, and an emphasis on clinical trials and neuroimaging research). They have a very strong program in Multiple Sclerosis/Neuroimmunology (including multiple clinical trials, Neuroimaging research, the only Pediatric MS Center in the country, and a focus on gender issues in MS). They also have strong programs in Neuromuscular Disease (with a particular interest in ALS, and nerve/muscle biopsies), Neurologic Infections (with a particular interest in emerging pathogens), Parkinson's Disease, Neurorehabilitation, and Behavioral Neurology. | nif-0000-02076 | http://www.hsc.stonybrook.edu/som/neurology/index.cfm | SCR_007479 | SUNY Stonybrook | 2026-08-12 10:49:43 | 0 | ||||||||||
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Stanford University School of Medicine Neurology and Neurological Sciences Resource Report Resource Website |
Stanford University School of Medicine Neurology and Neurological Sciences (RRID:SCR_007478) | data or information resource, department portal, portal, organization portal | The Department of Neurology and Neurological Sciences offers comprehensive evaluation and treatment of adults and children with neurological disorders. Clinical programs include general neurology, epilepsy, stroke, movement disorders, memory disorders, multiple sclerosis, neuromuscular diseases, neuro-oncology, neurophysiology, and child neurology. Their educational programs offer outstanding residency training in adult and child neurology and post-residency fellowship training in many neurological subspecialties. Many current faculty members are international leaders in their field. Included among its former trainees and faculty are many department chairs and other leaders in American neurology. The Department provides care and consultative services to patients referred from throughout California and from throughout the nation. The combination of recent and current enhanced development of clinical facilities at Stanford and its allied medical centers along with continued robust population growth in Northern California and the Bay Area provides a remarkable breadth and depth of clinical neurology experience. Research in the Department of Neurology and Neurological Sciences covers a wide range of multidisciplinary programs ranging from basic neuroscience studies, preclinical studies and clinical trials. In addition, Stanford is well known for its outstanding neuroscience community. The outstanding academic milieu at Stanford along with cutting edge programs promoting multidisciplinary research makes possible an exceptional degree of research integration that links Department faculty members and trainees with those from multiple schools and departments, each with major national stature, across the Stanford campus. The Department has a particularly rich tradition of integrating cutting edge advances in basic science with novel clinical approaches. | nif-0000-02072 | SCR_007478 | Stanford | 2026-08-12 10:49:47 | 0 | |||||||||||
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Activ 2000 Resource Report Resource Website 1+ mentions |
Activ 2000 (RRID:SCR_007352) | data processing software, data analysis software, software resource, software application | Data analysis software with the following main features: fMRI spatial and temporal pre-processing (gaussian filtering) with motion correction, time slicing and template co-registration ; fMRI multithreaded bloc processing with one or more conditions (up to 999), lateralization index, paradigm design (box-car style with HRF convolution), anatomic coregistration, multiplanar reconstructions, opengl 3D surfacic rendering. DPTools and Activ 2000 are now one single software: DPTools v 3.0 and above. All the features already included in DPTools are available for the fMRI processings (statistics, motion correction, time slicing, aso). DPTools 3.0 can read Siemens Mosaic and Philips REC/PAR files for diffusion / dynamic series, and can export files to SPM99 format. Features: * Images Conversion * Paradigm Creation * Images Pre-Processing * Images Processing * Statistics * Co-registration * 3D * Filming * Loading / Saving * Batch Script * PACS Integration * and more... Activ 2000 is freely downloadable (46 MB) | nif-0000-00258 | SCR_007352 | DPTools | 2026-08-12 10:49:42 | 3 | |||||||||||
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3DViewnix Resource Report Resource Website 1+ mentions |
3DViewnix (RRID:SCR_007351) | 3DViewnix | data processing software, d visualization software, software resource, software application | Data-, machine-, and application- independent software system for the visualization and analysis of multidimensional images. This transportable, very inexpensive software system, has capabilities for visualizing, manipulating, and analyzing multidimensional, multimodality image information. It is designed to run on Unix machines under X-windows. It uses a data protocol that is a multidimensional generalization of the ACR-NEMA standards. We have tested it extensively on SGI and Sun workstations and PCs. Other recipients of 3DVIEWNIX have installed it on a variety of platforms including IBM RS6000s, HP700s, and Stardent, all from a single source code version. UNIQUE FEATURES OF 3DVIEWNIX * Transportable - based on UNIX, X-window, and C * Based on multidimensional generalization of ACR-NEMA standards of data representation * Application-independent * Image dimensionality independent * Can handle rigid, non-rigid, static, and dynamic objects and object assemblies * Can handle object information from multiple modalities and longitudinal acquisitions * Multitudes of visualization, manipulation, and analysis methods incorporated * Open software system distributed with source code | 3d imaging, registration, segmentation, visualization, volume, multi-modal, image |
is listed by: 3DVC is listed by: Biositemaps has parent organization: University of Pennsylvania; Philadelphia; USA |
PMID:12821028 | Open software system distributed with source code | nif-0000-00257 | SCR_007351 | 2026-08-12 10:49:44 | 1 | |||||||
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St. Louis University Medical School Pharmacology and Physiology Resource Report Resource Website |
St. Louis University Medical School Pharmacology and Physiology (RRID:SCR_007475) | data or information resource, department portal, portal, organization portal | The Department of Pharmacological and Physiological Science is a major participant in the current excitement involving research in modern biomedical science. The faculty in the department have diversified backgrounds in the fields of biochemistry, medicine, molecular biology, neuroscience, pharmacology and physiology. A common theme involves the physiology, pathophysiology and pharmacology of intracellular and intercellular communication. Major areas of specialization include: neurotransmitter biochemistry, physiology and pharmacology; molecular biology, biochemistry and pharmacology of neurotransmitter, autacoid, neurohumoral and hormone receptors; intracellular signaling and transduction mechanisms; electrophysiology and ion channels; neurochemistry; cardiovascular and circulatory control mechanisms; regulation and function of the autonomic, somatic and central nervous systems; molecular, cellular and endocrine control mechanisms; respiratory physiology; neuropharmacology and drugs of abuse. Modern research in pharmacological and physiological science applies the experimental methods derived from disciplines that range from clinical medicine to biophysics, biochemistry and molecular biology to provide a detailed understanding of drug action and physiological function at many different levels of inquiry. | nif-0000-02070 | http://www.slu.edu/colleges/med/pharmphys/ | SCR_007475 | SLU | 2026-08-12 10:49:47 | 0 | ||||||||||
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Rutgers University Robert Wood Johnson Medical School Department of Pharmacology Resource Report Resource Website 1+ mentions |
Rutgers University Robert Wood Johnson Medical School Department of Pharmacology (RRID:SCR_007470) | data or information resource, department portal, portal, organization portal | Department of Pharmacology is committed to fulfilling its roles in education, research and service, both locally and on a broader scale. Our faculty contributes to the education of medical, graduate and undergraduate students in the classroom and in the laboratory; carries out research at the forefront of biomedical science while training the next generation of research scientists; and serves the medical school, university, national and international scientific communities. | nif-0000-02056 | http://www2.umdnj.edu/pharmweb/ | SCR_007470 | Rutgers | 2026-08-12 10:49:37 | 2 | ||||||||||
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University of Houston, Department of Psychology Resource Report Resource Website |
University of Houston, Department of Psychology (RRID:SCR_007507) | data or information resource, department portal, portal, organization portal | The Department of Psychology bring the best of psychological theory, techniques and research methods to the solution of real world problems. Their goal is to solve important human problems and to use these problems as critical vehicles for dynamic teaching and the enhancement of psychological theory and practice. A major objective of our teaching is to empower our students to use psychological knowledge for the solution of scientific, social and business problems. | nif-0000-02178 | SCR_007507 | UH | 2026-08-12 10:49:37 | 0 | |||||||||||
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University of Kansas Medical Center Pharmacology Resource Report Resource Website |
University of Kansas Medical Center Pharmacology (RRID:SCR_007508) | data or information resource, department portal, portal, organization portal | The Department of Pharmacology, Toxicology and Therapeutics at the University of Kansas Medical Center have faculty with diverse research interests. These three areas are essential for the development of new drugs and to determine the safety of all chemicals. Thus, students obtain a broad educational background in our department, which markedly increases their opportunities for employment. During the last three years, the Department has undergone a marked expansion. Seven new faculty have been hired. In addition, a number of new pieces of scientific equipment have been purchased: HPLC-MS/MS, nucleotide sequencer, robot, etc. In September of 2006 we plan to move into a new research building, as shown in the architects drawing. We also plan to hire six additional faculty the next three years. Thus, this department is an exciting place to be. | is related to: University of Kansas Medical Center; Kansas; USA | nif-0000-02187 | SCR_007508 | KUMC | 2026-08-12 10:49:47 | 0 | ||||||||||
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University of California, San Diego, Department of Pharmacology Resource Report Resource Website |
University of California, San Diego, Department of Pharmacology (RRID:SCR_007503) | UCSD Department of Pharmacology | data or information resource, department portal, portal, organization portal | The Department of Pharmacology is renowned for its strength in elucidating basic cellular and molecular mechanisms of signal transduction that lead to drug target identification and ultimately to drug discovery. Many of the department's research efforts impact directly on human health, supported by NIH grants on hypertension, cardiovascular regulation, cancer, and neurological and inflammatory diseases. The department's research directions include computational and molecular science, catalyzed by the department's close affiliation with the San Diego Supercomputer Center, and structure guided drug design and bioinformatics. Cross campus efforts in environmental health sciences and pharmacogenomics have been launched through major NIH funded project grants. Appointments of adjunct faculty from the local biotechnology and pharmaceutical industry create a natural bond for cross fertilization and communication, bridging the department's basic science efforts, and enhances endeavors in drug discovery. | has parent organization: University of California at San Diego; California; USA | nif-0000-02150 | SCR_007503 | 2026-08-12 10:49:43 | 0 | ||||||||||
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University of Massachusetts Amherst Department of Neuroscience and Behavior Resource Report Resource Website |
University of Massachusetts Amherst Department of Neuroscience and Behavior (RRID:SCR_007469) | portal, postdoctoral program resource, data or information resource, department portal, training resource, graduate program resource, organization portal | Neuroscience and Behavior Program is an independent, graduate degree-granting academic unit that brings together faculty members from a number of different departments and colleges to provide cutting-edge interdisciplinary research training in Neuroscience and Behavior. Graduate students are recruited and admitted directly into the NSB Program and not through the home departments of participating faculty members, as is the case at many institutions. | nif-0000-02205 | SCR_007469 | 2026-08-12 10:49:43 | 0 | ||||||||||||
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Ohio State University Department of Neurology Resource Report Resource Website |
Ohio State University Department of Neurology (RRID:SCR_007466) | data or information resource, department portal, portal, organization portal | Ohio State University Department of Neurology is enjoying tremendous growth. As a program prioritized by the university, we are well on our way to doubling our faculty, and we continue to expand an innovative and rigorous research portfolio. Dedicated to multidisciplinary collaboration, our goal is to accurately diagnose, treat and improve the lives of individuals with neurological diseases, while increasing our understanding of the causes of neurological disease and discovering more effective treatments. An equally important mission is to educate and foster the careers of the next generation of neurologists and translational neuroscientists. | nif-0000-02035 | http://biomed.osu.edu/neuroscience/ | SCR_007466 | OSU | 2026-08-12 10:49:43 | 0 | ||||||||||
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New York University School of Medicine Department of Neuroscience and Physiology Resource Report Resource Website |
New York University School of Medicine Department of Neuroscience and Physiology (RRID:SCR_007465) | data or information resource, department portal, portal, organization portal | In affiliation with NYU Langone Health’s Neuroscience Institute, the Department of Neuroscience and Physiology is home to an interdisciplinary team of scientists working to enhance our knowledge of fundamental and emerging principles of neuroscience. By bringing together investigators from basic research, translational, and clinical laboratories, we facilitate partnerships that lead to innovative research projects. | has parent organization: New York University School of Medicine; New York; USA | nif-0000-02025 | http://www.med.nyu.edu/Physio/main.html | SCR_007465 | NYU SOM Dept. of Physiology and Neuroscience | 2026-08-12 10:49:47 | 0 | |||||||||
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Purdue University School of Pharmacy and Pharmaceutical Sciences Department of Medicinal Chemistry and Molecular Pharmacology Resource Report Resource Website 1+ mentions |
Purdue University School of Pharmacy and Pharmaceutical Sciences Department of Medicinal Chemistry and Molecular Pharmacology (RRID:SCR_007468) | data or information resource, department portal, portal, organization portal | The Department of Medicinal Chemistry and Molecular Pharmacology is one of the three departments comprising the School of Pharmacy and Pharmaceutical Sciences. There are currently over 80 graduate students enrolled in the Department, the vast majority of whom are engaged in studies leading to the Ph.D. degree. The presence of approximately 30 postdoctoral associates and other research staff professionals further enriches the intellectual atmosphere. Graduate students in the Department have the opportunity to interact with researchers in a wide variety of fields, including many who are associated with other departments at Purdue. Various research groups actively collaborate with groups from departments such as biochemistry, biological sciences, chemical engineering, chemistry, foods and nutrition, horticulture, and physics. In addition, approximately half of our faculty belong to the Purdue Cancer Center, the Neuroscience Program, the Graduate Program in Virology and/or the Purdue University Biochemistry and Molecular Biology Program (BMB), leading to extensive, formalized interactions campus-wide. Graduate students attend research seminars across campus, -affording the opportunity to observe firsthand many of the world's foremost researchers. | nif-0000-02045 | SCR_007468 | Purdue | 2026-08-12 10:49:47 | 6 | |||||||||||
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University of California, Riverside, Department of Cell Biology and Neuroscience Resource Report Resource Website |
University of California, Riverside, Department of Cell Biology and Neuroscience (RRID:SCR_007500) | data or information resource, department portal, portal, organization portal | Research in the Department of Cell Biology and Neuroscience uses multidisciplinary approaches to understanding basic cellular processes in various tissues, including the nervous system, as well as more integrative levels of analysis, including behavior. Areas of research represented in the department include biophysical properties of excitable membranes, DNA repair, transcriptional regulation, mechanisms of toxicity, insect development, membrane transport, mechanisms of mitotic chromosome transmission, telomere maintenance, synaptic structure and function, changes in nervous system with experience, interactions of nervous and endocrine systems, reproductive biology and fertilization, chemokine function in wound healing and tumor development, glia-neuron signaling, & brainstem and spinal cord control of locomotion. | nif-0000-02147 | SCR_007500 | CBNS | 2026-08-12 10:49:43 | 0 | |||||||||||
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Medical University of South Carolina Department of Cell and Molecular Pharmacology and Experimental Therapeutics Resource Report Resource Website |
Medical University of South Carolina Department of Cell and Molecular Pharmacology and Experimental Therapeutics (RRID:SCR_007463) | data or information resource, department portal, portal, organization portal | There are tremendous opportunities for students and postdoctoral fellows interested in joining our department. Faculty members in our Department have new or renovated laboratory facilities, with access to core facilities that can serve as functional drivers for trainee research projects. The Department has major foci in redox and cell signaling (facilitated by an NIGMS funded COBRE grant; see the link to the COBRE program within the department website), proteomics and mass spectrometry (with an MUSC supported core facility) and mass spectrometry based imaging. Moreover, MUSC has committed to supporting a drug discovery program, which provides opportunities for early stage discovery and development of new drug entities. Present faculty research interests encompass new drug discovery/development, cancer therapeutics, cell signaling and stress responses, redox pathways, G protein signaling in aging and neurological disorders, kinase signaling, epigenetics and cancer, ALS and associated neurological pathologies, proteomics and mass spectrometry based imaging. | has parent organization: Medical University of South Carolina; South Carolina; USA | nif-0000-02010 | SCR_007463 | MUSC Department of Cell and Molecular Pharmacology, MUSC Department of Cell and Molecular Pharmacology and Experimental Therapeutics | 2026-08-12 10:49:43 | 0 | ||||||||||
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Allen Human Brain Atlas Resource Report Resource Website 100+ mentions |
Allen Human Brain Atlas (RRID:SCR_007416) | data or information resource, data visualization software, database, software application, data processing software, software resource, atlas | Multi modal atlas of human brain that integrates anatomic and genomic information, coupled with suite of visualization and mining tools to create open public resource for brain researchers and other scientists. Data include magnetic resonance imaging (MRI), diffusion tensor imaging (DTI), histology and gene expression data derived from both microarray and in situ hybridization (ISH) approaches. Brain Explorer 2 is desktop software application for viewing human brain anatomy and gene expression data in 3D. | atlas, human, brain, anatomic, genomic, data, visualization, mining, tool, MRI, DTI, histology, gene, expression |
is related to: Speech Language Disorders Database has parent organization: Allen Institute for Brain Science has parent organization: Allen Brain Atlas |
Individual private donors ; U.S. Department of Health and Human Services 1C76HF15069; U.S. Department of Health and Human Services 1C76HF19619 |
PMID:23041053 | Free, Available for download, Freely available | nif-0000-00506 | http://humancortex.alleninstitute.org, http://human.brain-map.org/ | SCR_007416 | Human Cortex Study, Allen Institute for Brain Science Human Cortex Study, Allen Brain Atlas - Human Brain | 2026-08-12 10:49:43 | 135 | |||||
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International Drug Abuse Research Society Resource Report Resource Website 1+ mentions |
International Drug Abuse Research Society (RRID:SCR_007411) | portal, data or information resource, bibliography, training resource, community building portal, meeting resource | IDARS is an international scientific organization that promotes and fosters the research and collaboration of scientists around the world in the area of substances of abuse and addiction. Our focus is to foster research in molecular, cellular and systems biology and includes neuropharmacological, neurobehavioral, neurochemical and neuroanatomical themes. The purposes of IDARS are scientific, educational and charitable. We strive to promote excellence in: advancing the understanding of drug abuse, substance abuse and addictions, including the part they play in behaviors of humans and in animal models bringing together scientists of varying backgrounds and disciplines within the field of drug abuse research integrating drug abuse research directed at all levels of biological organization and its translation to improvement in clinical prevention and treatment efforts promoting education in the addiction sciences informing the general public on the results and implications of current research in the addiction sciences promoting other activities that will contribute to the development of addiction sciences IDARS is a 501c3 nonprofit organization. | drug abuse, drug abuse research, addiction, addiction sciences, animal models, behaviors, cellular, clinical, collaboration, humans, molecular, neuroanatomical, neurobehavioral, neurochemical, neuropharmacological, prevention, substance abuse, substances of abuse, systems biology, treatment | has parent organization: National Center for Toxicological Research | nif-0000-00496 | SCR_007411 | IDARS | 2026-08-12 10:49:45 | 1 | |||||||||
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Xvoxtrace Resource Report Resource Website |
Xvoxtrace (RRID:SCR_007377) | data processing software, image processing software, software resource, software application | Xvoxtrace enables volume segmentation of tomographic data using manual tracing. This program allows the researcher to outline features on individual planes of the volume while being guided by simultaneous views of the tracing displayed on a volume rendering or tilt-series. Traced contours can be viewed using XDend or used to generate surfaces for viewing in Synu. Basic Requirements:OpenGL, X windows, and Linux platforms : : | has parent organization: National Center for Microscopy and Imaging Research | nif-0000-00354 | SCR_007377 | Xvoxtrace | 2026-08-12 10:49:43 | 0 | ||||||||||
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Bernstein Network Computational Neuroscience Germany Resource Report Resource Website |
Bernstein Network Computational Neuroscience Germany (RRID:SCR_007413) | portal, data or information resource, funding resource, training resource, job resource, organization portal | The Bernstein Network for Computational Neuroscience, Germany, is a funding initiative of the German Federal Ministry of Education and Research that supports the development of this field in Germany. Understanding the brain is the prerequisite for creating new methods for prevention and treatment of diseases of the nervous system. It may also help developing new strategies for learning and teaching. It may even be used for the design of new, ''intelligent'' technical devices, such as neuroprostheses or more powerful computer systems. For investigating the brain, the interdisciplinary approach of computational neuroscience, in which experts in biology, physics, psychology, medicine, mathematics and engineering join forces, holds especially promising perspectives. By combining experiment, data analysis, theoretical modelling and computer simulations, computational neuroscience allows translating basic research to targeted applications. The Bernstein Network currently comprises more than 200 research groups at over 20 locations all over Germany. It entertains partnerships with more than 20 companies. Besides its research activities, the network offers attractive teaching and training options for young researchers. A large number of open positions are available, ranging from PhD students positions up to professorships. Keywords: grant, funding, resource, training, job, research, Network, Scientist, Teaching, biology, physics, psychology, medicine, mathematics, engineering, Computational, Neuroscience, Computational Neuroscience, Germany, | nif-0000-00497 | SCR_007413 | NNCN | 2026-08-12 10:49:43 | 0 |
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