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http://www.cihr-irsc.gc.ca/e/8602.html

Canadian Institutes of Health Research Institute of Neurosciences, Mental Health and Addiction (INMHA) supports research on the functioning and disorders of the brain, the spinal cord, the sensory and motor systems, and the mind. The burden of disease in terms of the social, economic and health care costs associated with these disorders and related illnesses are staggering and there are indications that the number of people affected either directly or indirectly will continue to increase in the years to come. The INMHA is a unique institute because, based on recent discoveries, it has been designed to address all aspects of research dealing with Brain-Mind relationships inclusive of the four pillars of the CIHR, which are: * biomedical, * clinical, * health services and * population health research. It is a daunting endeavour, but the INMHA can transform this challenge into a unique opportunity for fostering innovation in our area of health research.

Proper citation: Institute of Neurosciences Mental Health and Addiction (RRID:SCR_007404) Copy   

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http://www.neuroschools-germany.com

This is an umbrella site for the major neuroscience programs in Germany, including GTTINGEN: MSc/PhD/MD-PHD Neurosciences Program BOCHUM: International Graduate School of Neuroscience TBINGEN: Graduate Training Center of Neuroscience MNCHEN: MSc/PhD Neurosciences Program BERLIN: International Graduate Program Medical Neurosciences, International Graduate Program Computational Neurosciences, Bernstein Center for Computational Neuroscience, Berlin School of Mind and Brain, Helmholtz International Research School Molecular Neurobiology MAGDEBURG: Integrative Neuroscience.

Proper citation: German Graduate Schools of Neuroscience (RRID:SCR_007403) Copy   

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https://cihr-irsc.gc.ca/e/8671.html

IA (CHIR, Canada) supports research that promotes healthy aging and addresses causes, prevention, screening, diagnosis, treatment, support systems, and palliation for a wide range of conditions associated with aging. :funding resource, grants :

Proper citation: Institute of Aging - CIHR (RRID:SCR_007405) Copy   

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https://www.jefferson.edu/academics/colleges-schools-institutes/skmc/departments/neurology.html

The Department of Neurology at Jefferson Medical College has a long tradition of excellence in clinical training and care. They are committed to providing an active and exciting research program, exemplified by the Farber Institute for the Neurosciences, established in the spring of 2002. Consolidation of our academic and research base with the neurology ambulatory care facility at the new Jefferson Hospital for the Neurosciences underscores the continuing evolution of the Neurology department, and of its many functions, including, our fully approved residency program.

Proper citation: Thomas Jefferson University Neurology (RRID:SCR_007488) Copy   

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https://unmhealth.org/services/sleep-medicine/sleep-studies.html

University of New Mexico Health Sciences Center Program in Sleep Medicine Sleep Disorders Center was established in 1983 and was the first nationally accredited sleep disorders center in the State of New Mexico receiving accreditation in March of 1992 from the American Academy of Sleep Medicine. They provide comprehensive services to individuals having symptoms occurring during sleep or while awake due to unrefreshing sleep. The Program combines a state-of-the-art outpatient sleep laboratory, inpatient sleep laboratory, sleep medicine clinic, and trained medical and technical staff dedicated to the diagnosis and treatment of sleep/wake disorders in adults and children. The University of New Mexico Health Sciences Center Program in Sleep Medicine has the distinction of having a first and many onlys attached to it. The criteria for accreditation is very stringent and to date, there is only one other accredited center in the entire state. The Center is also accredited by the Joint Commission on the Accreditation of Health Care Organizations.

Proper citation: University of New Mexico Sleep Disorders Clinic (RRID:SCR_007520) Copy   

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http://und-public.courseleaf.com/undergraduateacademicinformation/departmentalcoursesprograms/pharmacologyphysiologyandtherapeutics/

Department of Pharmacology, Physiology and Therapeutics at the University of North Dakota School of Medicine and Health Sciences is strongly committed to providing their students and the people of North Dakota excellent programs in education, research and service and they are dedicated to the development of leadership, innovation, and scholarly excellence. The translation of fundamental knowledge in the basic sciences to medically relevant problems is a major goal of the department and they are capable of providing the individualized attention and training necessary for the development of the medical scientist of the future.

Proper citation: University of North Dakota Department of Pharmacology Physiology and Therapeutics (RRID:SCR_007523) Copy   

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https://www.ttuhsc.edu/medicine/pharmacology/default.aspx

The Department of Pharmacology and Neuroscience at Texas Tech University is committed to providing a strong education experience for all trainees. The department's primary areas of training emphasis are neuroscience/ neuropharmacology and cardiovascular/ autonomic pharmacology.Our objective is to prepare students for careers in research and teaching. We currently have 14 faculty and who conduct research in a broad variety of subjects ranging from environmental toxicology to molecular pharmacology. This allows a broad basis for a strong theoretical as well as 'hands-on' education in pharmacology. The faculty of the program work hard to foster a creative and productive research atmosphere, to provide encouragement and positive challenges, and to equip students with the intellectual tools they will need to be good teachers and investigators.

Proper citation: Texas Tech University Department of Pharmacology and Neuroscience (RRID:SCR_007483) Copy   

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https://med.uth.edu/nrc/

The Neuroscience Research Center (NRC) is a university-wide center where diverse and multidisciplinary research is conducted to further the understanding of neural and behavioral disorders. Whether conducting cellular research in laboratories or clinical trials in patient care settings, the work of NRC researchers may someday contribute to preventing and treating such devastating disorders as: * Dementias resulting from Alzheimer''s disease and stroke * Mental retardation and other learning disabilities * Mental illnesses, including schizophrenia and manic-depressive illness * Alcoholism and other substance abuse problems * Inability to process knowledge due to factors such as aging and head trauma * Disabilities due to disorders of the developing nervous system More than 280 faculty hold NRC appointments, and are on the faculties of the Medical School, School of Public Health, School of Nursing, Dental Branch, and School of Biomedical Informatics. Departments with significant NRC research activities within the Medical School include Neurobiology and Anatomy; Neurology; Neurosurgery; Ophthalmology and Visual Science; Psychiatry and Behavioral Sciences and Radiology. NRC activities are guided by an executive committee appointed by the President of the Health Science Center. The Neuroscience Research Center (NRC) is affiliated with educational opportunities at the graduate and postdoctoral levels.

Proper citation: UTHealth at Houston Neuroscience Research Center (RRID:SCR_007486) Copy   

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http://www.medicine.tamhsc.edu/basic-sciences/next/index.html

The Department of Neuroscience and Experimental Therapeutics (NExT) at the Texas A&M Health Science Center College of Medicine has 16 full-time faculty members and is one of four basic science departments within the College of Medicine. Program strengths within the department include brain development, cellular/molecular basis of drug addiction, circadian biology, ocular pharmacology and experimental therapeutics, neurobiology of aging, neurodegenerative diseases such as stroke and Alzheimer''s disease, neuro-oncology and neuroteratology of alcohol, nicotine and other drugs of abuse. The Department of Neuroscience and Experimental Therapeutics participates in an interdisciplinary graduate program in the Medical Sciences that leads primarily to the Ph.D. degree with special emphasis in interdisciplinary training in Neurosciences or Pharmaceutical Sciences. The Ph.D. program in Medical Science usually requires 4-5 years to complete. Graduates from our program are prepared for leadership roles in research and teaching in academic, industrial, or governmental positions. Faculty within the department are affiliated with university-wide interdisciplinary faculties including the TAMU Faculty of Neuroscience rand our clinical science partner, the Texas Brain and Spine Institute. The department is also home to the Women''s Health in Neuroscience Program, consisting of interdisciplinary research faculty and a clinical advisory group aimed at developing a cohesive preclinical approach to the impact of puberty, pregnancy and menopause on brain development, mental health and brain disease.

Proper citation: Texas A and M Health Science Center College of Medicine Department of Neuroscience and Experimental Therapeutics (RRID:SCR_007482) Copy   

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http://www.upstate.edu/pharm/

Research in the Department of Pharmacology focuses on three major areas: 1) cardiovascular science 2) cell signaling 3) cancer biology and therapeutics. Within those areas, research ranges from basic biological problems to those with clinical orientations. The cardiovascular science research strives to understand the normal and abnormal functioning of the heart at the molecular, cellular and organ levels, and is exceptionally strong in cardiac electrophysiology and the mechanisms of cardiac arrhythmia. The cell signaling research concerns regulation of cell function by extracellular factors, the molecular biology of signaling pathways, cell communication, and intracellular proteolysis. The cancer biology and therapeutics research is focused on molecular mechanisms regulating cell death and survival in human malignancies, development and testing of novel cancer therapeutics, novel tumor markers, oncogenic transformation and apoptosis, regulation of tumor suppressors and molecular mechanisms of leukemogensis. The Pharmacology Department has multiple research grants for the next five years. Most of the funding comes from the National Institutes of Health (NIH), with additional funding from the Association for International Cancer Research, the American Society of Hematology, the Department of Defense and the American Heart Association.

Proper citation: SUNY Upstate Medical University, Pharmacology (RRID:SCR_007481) Copy   

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http://www.usal.es/webusal/en

Spanish higher education institution, located in the city of Salamanca, west of Madrid, in the autonomous community of Castile and León. It was founded in 1134 and given the Royal charter of foundation by King Alfonso IX in 1218.

Proper citation: University of Salamanca; Salamanca; Spain (RRID:SCR_007833) Copy   

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http://purl.bioontology.org/ontology/SPTO

Ontology for Solanaceae crop phenotypes and traits, developed in collaboration with the research community, especially for breeder traits of agronomic importance.

Proper citation: Solanaceae Phenotype Ontology (RRID:SCR_007832) Copy   

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http://bmserver.sce.ntu.edu.sg/INVERTER/

Software for a de novo exact match tandem repeat finder which main advantage is without the need to specify either the pattern or a particular pattern size, integrated with a data visualization tool and has a built-in user-friendly Graphical User Interface.

Proper citation: INVERTER (RRID:SCR_007956) Copy   

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http://zmf.umm.uni-heidelberg.de/apps/zmf/argonaute/single.php

A database is a of mammalian miRNAs and their known or predicted regulatory targets. It provides information on origin of miRNAs, tissue specificity of their expressions and their known or proposed functions, their potential target genes as well as data on miRNA families based on their co-expression and proteins known to be involved in miRNA processing. This database also contains three other navigation tools that can be used to find information relating to miRNA: 1.) Gene Annotations is an information retrieval system for miRNA target genes. It provides comprehensive information from sequence databases and allows to simultaneously search PubMed with all synonyms of a given gene. 2.) miRNA Motif Finder - Argonaute predicts miRNA motifs binding to the gene sequence of the user. The miRNA mature sequences are taken from Agronaute 2 database. miRNA Motif Finder - Custom predicts miRNA motifs binding to the gene sequence, both the gene sequence and miRNA mature sequences provided by the user. 3.) miRNA Statistics provides statistics for the mature miRNA sequences from Argonaute 2 as well as for the miRNA sequences uploaded by the user. It provides statitics on the individual nucleotide as well as pattern of nucleotides apperaing in the sequence.

Proper citation: ARGONAUTE 2 - A database on mammalian microRNAs and their function in gene and pathway regulation (RRID:SCR_007553) Copy   

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http://brancusi1.usc.edu/thesaurus/list/

THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 19,2022. The BAMS Thesaurus is a part of the larger BAMS The Foundational Model of Connectivity (FMC). The principle of constructing the resource are: 1. Systematic attempts to produce internally consistent classifications and taxonomies require theoretical frameworks for deciding between alternatives. 2. Alternate classification and taxonomy schemes are always possible and must be accommodated. 3. The FMC is based on evidence, not authority. All components are justified by reference to the best observational or experimental evidence from the literature, combined with reference to priority when possible, not by undocumented statements from textbooks, the Web, or elsewhere. 4. The FMC is based on evolving evidence and concepts, revisions are based on enforced rules, and versioning is systematic and historical. The first version of FMC and the foundation of this online version was published in Swanson & Bota (2010). Please cite this reference whenever any part of the FMC is used in any way. This online version of FMC has the following main parts: 1. Thesaurus, which includes an alphabetical list of all concepts and terms used in FMC to date. The preferred terms are in bold. Clicking on each term of the Thesaurus will retrieve its definition, reference, list of synonyms, and a comment form that can be used by registered users. 2. References, which includes an alphabetical list of the literature used to construct FMC. Listed references are associated with the definitions included in the Thesaurus, and PubMed links. 3. Search form that can be used to search for terms defined in FMC, included in their definitions, their abbreviations, and references (search by authors). We strongly recommend to read FMC rules and notations before starting to use the online version.

Proper citation: BAMS Thesaurus (RRID:SCR_008003) Copy   

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http://healthresearchfunding.org/

Health Research Funding is designed to bring researchers with peer-reviewed, worthwhile, unfunded projects together with patient advocacy organizations and other funding sources. Working together, we hope to foster the funding of new research that will provide hope to millions of people in this country with chronic diseases and disabilities. * We invite researchers with promising projects that have been scored but not funded by the NIH to submit their abstracts. By registering, you will be able to search for information about organizations that fund research and their requests for abstracts. * Researchers with proposals that have been peer-reviewed but not funded by a NHC member patient advocacy organization may also register. The National Health Council (NHC) developed this site with input from the National Institutes of Health (NIH), the nation''s medical research agency.

Proper citation: Health Research Funding (RRID:SCR_007790) Copy   

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http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/

Allow the high-performance display of next-generation sequencing experiment results in the UCSC Genome Browser.

Proper citation: BigWig and BigBed (RRID:SCR_007708) Copy   

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https://code.google.com/p/highssr/

Software that predicts microsatellites with Tandem Repeats Finder (TRF).

Proper citation: HighSSR (RRID:SCR_007949) Copy   

•   Source: SciCrunch Registry

http://ekhidna.biocenter.helsinki.fi/sqgraph/pairsdb

This is a web interface for ADDA, an automatic algorithm for domain decomposition and clustering of all protein domain families. We use alignments derived from an all-on-all sequence comparison to define domains within protein sequences based on a global maximum likelihood model. ADDA is downloadable. There are three ways in which you can retrieve a protein sequence and its domains from ADDA. Sequences can be located using sequence identifiers and/or accession numbers, using a identical fragment lookup, or by running BLAST against all sequences in ADDA. ADDA is a protein sequence clustering algorithm. It takes a set of sequences and returns domain families. ADDA has two steps corresponding to the two aspects of the protein sequence clustering domain. First, ADDA splits protein sequences into domains. The idea behind ADDA is in principle the application of Occam''s razor; the goal is to describe the diversity of protein sequences with a minimal set of protein domains. The algorithm behind ADDA approximates this minimal set. In practice ADDA works by looking at where BLAST alignments are located on the sequence and splits the sequences, so that as few as possible alignments are cut by domain boundaries and that as many alignments as possible stretch over complete domains. Secondly, ADDA takes all the domains and then arranges them in a minimum spanning tree, where the similarity between two domains is determined by their relative overlap given a BLAST alignment. Each link in the tree is then checked by a pairwise profile-profile comparison and links below a threshold are removed. The remaining connected components are then taken to represent protein domain families.

Proper citation: ADDA - Automatic Domain Decomposition Algorithm (RRID:SCR_007546) Copy   

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http://www.nmpdr.org/FIG/wiki/view.cgi

The National Microbial Pathogen Data Resource provides curated annotations in an environment for comparative analysis of genomes and biological subsystems, with an emphasis on the food-borne pathogens Campylobacter, Listeria, Staphylococcus, Streptococcus, and Vibrio; as well as the STD pathogens Chlamydiaceae, Haemophilus, Mycoplasma, Neisseria, Treponema, and Ureaplasma. This edition of the NMPDR includes 47 archaeal, 725 bacterial, and 29 eukaryal genomes with 3,257,100 genetic features, of which 1,338,895 are in FIGfams curated using 616 active subsystems. ''''''Notice to NMPDR Users'''''' - The NMPDR BRC contract ended in December 2009. At that time we ceased maintenance of the NMPDR web resource and data. Bacterial data from NMPDR has been transferred to PATRIC (http://www.patricbrc.org), a new consolidated BRC for all NIAID category A-C priority pathogenic bacteria. NMPDR was a collaboration among researchers from the Computation Institute of the University of Chicago, the Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the National Center for Supercomputing Applications (NCSA) at the University of Illinois.

Proper citation: NMPDR (RRID:SCR_007821) Copy   

•   Source: SciCrunch Registry