Tools   Select Another Resource Report Type

https://www.acdlabs.com/products/draw_nom/draw/chemsketch/index.php

Software tool as molecular structure drawing application by ACD Labs. Allows user to Draw chemical structures, reactions, and schema, and access variety of graphical tools and templates, Generate names from molecular structure and vice versa, Calculate molecular properties from chemical structure, Create professional reports, presentations, and publication ready figures, Communicate scientific information with clarity and ease.

Proper citation: ACD/ChemSketch (RRID:SCR_019272) Copy   

•   Source: SciCrunch Registry

https://github.com/olivierfriard/BORIS

Open source event logging software for video/audio coding and live observations.Multiplatform standalone program that allows user specific coding environment for computer based review of previously recorded videos or live observations.

Proper citation: Behavioral Observation Research Interactive Software (RRID:SCR_021509) Copy   

•   Source: SciCrunch Registry

http://www.perl.org

Software tool to accompany existing resources such as Python programming language resource and comprehensive Perl archive network (CPAN) resource. Perl is family of two high level, general purpose, interpreted, dynamic programming languages. Perl refers to Perl 5, but from 2000 to 2019 it also referred to its redesigned sister language, Perl 6, before name was officially changed to Raku in October 2019.

Proper citation: Perl Programming Language (RRID:SCR_018313) Copy   

•   Source: SciCrunch Registry

https://www.rankinbiomed.com/product/refurbished-american-optical-860-sliding-micrtome/

THIS REOURCE IS NO LONGER IN SERVICE. Documented on September 29,2023. Sliding microtome used for cutting hard objects such as bone, wood, frozen celloidin, and paraffin preparations. Cutting thickness is adjustable from 1 to 40 microns.

Proper citation: American Optical: 860 Sliding Microtome (RRID:SCR_018434) Copy   

•   Source: SciCrunch Registry

https://github.com/dandi/dandi-cli/

Command line client to facilitate common operations.

Proper citation: dandi-cli (RRID:SCR_019009) Copy   

•   Source: SciCrunch Registry

https://atlasti.com/

Software qualitative analysis tool. Used by researchers and practitioners to uncover and systematically analyze complex phenomena hidden in unstructured data including text, multimedia, geospatial. Provides tools that let the user locate, code, and annotate findings in primary data material, to weigh and evaluate their importance, and to visualize relations between them. Consolidates documents and keeps track of all notes, annotations, codes and memos in all fields that require close study and analysis of primary material consisting of text, images, audio, video, and geo data. Provides analytical and visualization tools designed to open new interpretative views on material.

Proper citation: ATLAS.ti (RRID:SCR_022920) Copy   

•   Source: SciCrunch Registry

https://bioconda.github.io/

Software distribution management for life sciences. Channel for Conda package manager specializing in bioinformatics software. Consists of repository of recipes hosted on GitHub, build system turning these recipes into conda packages, repository of packages containing bioinformatics packages ready to use with conda install.

Proper citation: BioConda (RRID:SCR_018316) Copy   

•   Source: SciCrunch Registry

https://bbknn.readthedocs.io/en/latest/

Software to identify each cell’s top neighbours in each batch separately instead of entire cell pool with no accounting for batch. Nearest neighbours for each batch are then merged to create final list of neighbours for cell. Aligns batches in a quick and lightweight manner.

Proper citation: BBKNN (RRID:SCR_022807) Copy   

•   Source: SciCrunch Registry

https://github.com/wtsi-hpag/PretextView

Software tool to enable visualization from PretextMap output. Desktop application for viewing pretext contact maps. OpenGL Powered Pretext Contact Map Viewer.

Proper citation: PretextView (RRID:SCR_022024) Copy   

•   Source: SciCrunch Registry

https://www.freecad.org/

Open source parametric 3D modeler to design real life objects of any size. Parametric modeling allows modify your design by going back into your model history and changing its parameters.

Proper citation: FreeCAD (RRID:SCR_022535) Copy   

•   Source: SciCrunch Registry

https://bio.tools/galactic_circos

Software tool as Galaxy wrapper providing GUI for Circos tool. Circos allows visualizing data in circular format.

Proper citation: Galactic Circos (RRID:SCR_018207) Copy   

•   Source: SciCrunch Registry

https://github.com/kalininalab/d-StructMAn

Software tool provides annotation of non-synonymous single nucleotide variants in context of structural properties of resulting amino acid changes in corresponding proteins. Improved implementation of StructMAn, shipped in container form and extended to annotation of short in-frame indels and alterations arising as consequence of alternative splicing events. Produces range of structural features by combining information from experimentally resolved structures of many related proteins, which is unique feature of StructMAn family tools. Can also harness all protein structure models stored in AlphaFold Protein Structure Database.

Proper citation: d-StructMAn (RRID:SCR_022534) Copy   

•   Source: SciCrunch Registry

http://www.nutrisurvey.de/

Software tool for nutrition calculations and surveys.

Proper citation: NutriSurvey (RRID:SCR_022655) Copy   

•   Source: SciCrunch Registry

https://github.com/mridulaprasad/CorrDrugTumorMSI

Software R pipeline to correlate drug distribution with tumor tissue types in mass spectrometry imaging data.

Proper citation: CorrDrugTumorMSI (RRID:SCR_018962) Copy   

•   Source: SciCrunch Registry

https://github.com/lh3/calN50/

Software tool as simple script to calculate N50/NG50 and auN/auNG.

Proper citation: calN50 (RRID:SCR_022015) Copy   

•   Source: SciCrunch Registry

https://drawio-app.com/product/

Software tool as diagramming application that enables collaboration in real time.

Proper citation: draw.io (RRID:SCR_022939) Copy   

•   Source: SciCrunch Registry

https://github.com/chenxinfeng4/ArControl

Software tool as Arduino UNO/Mega based, visual programming and real-time behavioral platform for neuroscience. It can run Go/No-Go, 2AFPC and Optogenetic stimulation tasks. Stand alone and intuitive Gaphical User Interface application.Part of ArControl system.

Proper citation: ArControl (RRID:SCR_021605) Copy   

•   Source: SciCrunch Registry

https://github.com/sapporo-wes/sapporo-service

Software for standard implementation conforming to Global Alliance for Genomics and Health Workflow Execution Service API specification.

Proper citation: Sapporo service (RRID:SCR_023202) Copy   

•   Source: SciCrunch Registry

https://www.jmp.com/en_us/home.html

Statistical software tool. Predictive analytics software. Offers all tools in JMP plus advanced features for more sophisticated analyses.

Proper citation: SAS JMP Pro (RRID:SCR_022199) Copy   

•   Source: SciCrunch Registry

https://pypi.org/project/jupyter-client/5.2.3/

Jupyter protocol implementation and client libraries. Part of Project Jupyter which exists to develop open-source software, open-standards, and services for interactive computing across dozens of programming languages. Jupyter-client contains reference implementation of Jupyter protocol and provides client and kernel management APIs for working with kernels.

Proper citation: Jupyter-client (RRID:SCR_018413) Copy   

•   Source: SciCrunch Registry