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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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PEDAGREE Resource Report Resource Website 1+ mentions |
PEDAGREE (RRID:SCR_009321) | PEDAGREE | software resource, software application | Software program for detecting autosomal marker Mendelian incompatibilities in pedigree data (entry from Genetic Analysis Software) | gene, genetic, genomic, c, c++, unix, linux, ms-windows, ms-dos | is listed by: Genetic Analysis Software | nlx_154515 | SCR_009321 | 1.00 (February 2002) | 2026-08-12 10:49:58 | 1 | ||||||||
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MEGA2 Resource Report Resource Website 100+ mentions |
MEGA2 (RRID:SCR_009286) | MEGA2 | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application that uses as input a trio of files: 1) a LINKAGE-format locus file modified to contain locus name information; 2) a LINKAGE-format pedigree file; and 3) a map file. Mega2 then takes this trio of input files and, via a menu-driven interface, transforms them into various other file formats, thus greatly facilitating a variety of different analyses. In addition, for many of these options, it also sets up a C-shell script that then can automatically run these analyses (if you are using Mega2 in a Unix environment that supports C-shell scripts). (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, (solaris, silicon graphics, osf1, macos x), linux, ms-windows, macos, (x) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154471 | SCR_009286 | a Manipulation Environment for Genetic Analyses | 2026-08-12 10:49:54 | 114 | |||||||
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MAPQTL Resource Report Resource Website 100+ mentions |
MAPQTL (RRID:SCR_009284) | MAPQTL | software resource, software application | Software application for mapping of quantitative trait loci (QTLs) for several types of mapping populations: BC1, F2, RILs, (doubled) haploids, full-sib family of outbreeders. Analyses: interval mapping, composite interval mapping, nonparametric mapping, automatic cofactor selection, permutation test for interval mapping. QTL charts. Everything available in an intuitive MS-Windows user interface. (entry from Genetic Analysis Software) | gene, genetic, genomic, ansi c, delphi, ms-windows, (95/98/me/nt4.0/2000) | is listed by: Genetic Analysis Software | nlx_154468 | SCR_009284 | Software for the calculation of QTL positions on genetic maps | 2026-08-12 10:49:54 | 403 | ||||||||
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MAPMAKER/EXP Resource Report Resource Website 100+ mentions |
MAPMAKER/EXP (RRID:SCR_009281) | MAPMAKER/EXP | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, vms, ms-dos, macos | is listed by: Genetic Analysis Software | nlx_154462 | SCR_009281 | MMDRAWER | 2026-08-12 10:49:54 | 284 | ||||||||
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MAPMAKER/HOMOZ Resource Report Resource Website 1+ mentions |
MAPMAKER/HOMOZ (RRID:SCR_009282) | MAPMAKER/HOMOZ | software resource, software application | Software application that calculates multipoint lod scores in pedigrees with inbreeding loops (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix | is listed by: Genetic Analysis Software | nlx_154463 | ftp://ftp-genome.wi.mit.edu/distribution/software/homoz | SCR_009282 | homozygosity mapping | 2026-08-12 10:49:57 | 1 | |||||||
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RELATIVE Resource Report Resource Website 10+ mentions |
RELATIVE (RRID:SCR_009355) | RELATIVE | software resource, software application | Software application for relationship estimation, in particular between putative sibs when parents are untyped (entry from Genetic Analysis Software) | gene, genetic, genomic, ansi c, ms-dos, ms-windows, unix | is listed by: Genetic Analysis Software | nlx_154570 | SCR_009355 | 2026-08-12 10:49:55 | 37 | |||||||||
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RELATIVEFINDER Resource Report Resource Website 1+ mentions |
RELATIVEFINDER (RRID:SCR_009356) | RELATIVEFINDER | software resource, software application | Software program for checking relationships between pairs of individuals. There are many excellent programs that carry out similar tasks. Some of the unique features in relativeFinder are the batch mode options, that allow large jobs to be divided into many smaller jobs (suitable for deployment on a compute cluster environment), and the flexibility of the underlying Merlin engine, which allows relative finder to handle large pedigrees and consider a variety of alternate relationships -- including potential relationships specified by the user on the fly. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154571 | SCR_009356 | 2026-08-12 10:49:58 | 2 | |||||||||
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REAPER Resource Report Resource Website 10+ mentions |
REAPER (RRID:SCR_009354) | REAPER | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Tag SNP selection tool according to r2-bins method that is specifically designed for full genome scale deterministic tagging. | gene, genetic, genomic, windows, linux |
is listed by: Genetic Analysis Software has parent organization: University of Tartu; Tartu; Estonia |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154569 | SCR_009354 | 2026-08-12 10:49:55 | 11 | ||||||||
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QU-GENE Resource Report Resource Website 1+ mentions |
QU-GENE (RRID:SCR_009351) | QU-GENE | software resource, software application | Software package for quantitative analysis of genetic models (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, ms-windows | is listed by: Genetic Analysis Software | nlx_154566 | SCR_009351 | QUantitative GENEtics | 2026-08-12 10:49:55 | 6 | ||||||||
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RISCALW Resource Report Resource Website |
RISCALW (RRID:SCR_009352) | RISCALW | software resource, software application | Windows program for risk calculation in families with Duchenne muscular dystrophy. It is based on an extended genetic model which includes germline mosaicism and different new mutation rates depending on sex and mutation type. Arbitrary family structures and additional diagnostic information like genotypes from intragenetic and flancing genetic markers of the dystrophin gene, creatin kinase values and female deletion test results can be taken into account. (entry from Genetic Analysis Software) | gene, genetic, genomic, delphi 4, ms-windows | is listed by: Genetic Analysis Software | Duchenne muscular dystrophy | nlx_154567 | SCR_009352 | RISk CALculation in Windows | 2026-08-12 10:49:55 | 0 | |||||||
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PSEUDOMARKER.M Resource Report Resource Website 1+ mentions |
PSEUDOMARKER.M (RRID:SCR_009346) | PSEUDOMARKER.M | software resource, software application | A set of programs written in MATLAB for the analysis of QTL data from inbred line crosses. (entry from Genetic Analysis Software) | gene, genetic, genomic, matlab | is listed by: Genetic Analysis Software | nlx_154558 | SCR_009346 | 2026-08-12 10:49:58 | 1 | |||||||||
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PSEUDO Resource Report Resource Website 1+ mentions |
PSEUDO (RRID:SCR_009344) | PSEUDO | software resource, software application | Software application that estimates genomewide empirical p-values for Kong and Cox tests of linkage using the replicate pool method, which for many data sets, improves upon the computational efficiency of conventional gene-dropping methods by several orders of magnitude. This allows Pseudo to handle data sets with large families and makes it particularly applicable to those situations where p-value estimation by standard methods is computationally prohibitive. Pseudo also estimates variance for reported p-values, produces graphical and text summaries of results, and is able to assess significance of multiple correlated outcomes. Pseudo is designed to work with the Merlin package and includes utilities for generating input files from standard Merlin output. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, c++, linux, unix, macos, ms-windows |
is listed by: Genetic Analysis Software has parent organization: University of Michigan; Ann Arbor; USA |
PMID:16832873 | nlx_154556 | SCR_009344 | 2026-08-12 10:49:55 | 4 | ||||||||
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SAS/GENETICS Resource Report Resource Website 100+ mentions |
SAS/GENETICS (RRID:SCR_009343) | SAS/GENETICS | software resource, software application | Software application for summarizing marker properties (allele & genotype frequencies, tests for Hardy-Weinberg equilibrium, measures of marker informativeness), examining marker-marker relationships (tests and measures of linkage disequilibrium, and haplotype frequency estimation), and exploring marker-trait associations using case-control or family-based tests (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-windows, unix, (hpux/aixr/solaris/..), mvs | is listed by: Genetic Analysis Software | nlx_154609 | SCR_009343 | 2026-08-12 10:49:58 | 120 | |||||||||
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LOH-LINKAGE Resource Report Resource Website |
LOH-LINKAGE (RRID:SCR_009259) | LOH-LINKAGE | software resource, software application | Software program using loss of heterozygosity data to enhance the power to detect linkage in cancer families. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix | is listed by: Genetic Analysis Software | nlx_154438 | SCR_009259 | 2026-08-12 10:49:53 | 0 | |||||||||
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LOCUSZOOM Resource Report Resource Website 500+ mentions |
LOCUSZOOM (RRID:SCR_009257) | LOCUSZOOM | software resource, software application | Software application designed to facilitate viewing of local association results together with useful information about a locus, such as the location and orientation of the genes it includes, linkage disequilibrium coefficients and local estimates of recombination rates. It was developed by popular demand, as a result of many questions we have had about How did you make the figures in your talk? or How did you make the figures for your GWAS paper? (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154436 | SCR_009257 | 2026-08-12 10:49:57 | 772 | |||||||||
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LINKAGE-IMPRINT Resource Report Resource Website |
LINKAGE-IMPRINT (RRID:SCR_009253) | LINKAGE-IMPRINT | software resource, software application | Software application that is a parametric model-based approach to analyzing pedigree data for genomic imprinting. They have modified widely used LINKAGE program to incorporate imprinting. In addition, the LINKAGE-IMPRINT program allows for the use of sex-specific recombination in the analysis, which is of particular importance in a genome-wide analysis for imprinted genes. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, pascal, unix, solaris | is listed by: Genetic Analysis Software | nlx_154430 | SCR_009253 | LINKAGE allowing for IMPRINITING | 2026-08-12 10:49:53 | 0 | ||||||||
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PASS PEDIGREE Resource Report Resource Website |
PASS PEDIGREE (RRID:SCR_009315) | PASS PEDIGREE | software resource, software application | Software application to draw the most complex family trees in a matter of minutes instead of hours of work. The basis of this is an algorithm for automatically builing a family tree. Of course, manual adjustments in the family tree can be made for your specific requirements. PASS Pedigree meets all international conventions concerning the drawing of pedigrees. A converter can convert historical Cyrillic pedigrees automatically to PASS Pedigree. Unlike before, all your family trees are stored in one single database. PASS Pedigree can intelligently connect to many genetic centers (e.g. three genetic centers in the Netherlands) with the existing patient information, via the lab system HELIX based on HL7 techniques. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154509 | SCR_009315 | 2026-08-12 10:49:58 | 0 | |||||||||
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OSIRIS Resource Report Resource Website 100+ mentions |
OSIRIS (RRID:SCR_009313) | OSIRIS | software resource, software application | Software tool for the retrieval of articles from MEDLINE related to the sequence variants reported for a human gene. The variations considered are single nucleotide polymorphisms (SNPs), insertion/deletion polymorphisms (indel), microsatellite, and named variations (e.g. Alu sequences). (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154505 | SCR_009313 | 2026-08-12 10:49:54 | 218 | ||||||||
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P ACT Resource Report Resource Website 1+ mentions |
P ACT (RRID:SCR_009314) | P_ACT | software resource, software application | An R program that adjusts sets of up to 1000 p-values from association tests between correlated traits and SNPs for multiple testing, accounting for the correlation between tests. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154506 | SCR_009314 | P-values: Adjustment for Correlated Tests | 2026-08-12 10:49:54 | 4 | ||||||||
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MARGARITA Resource Report Resource Website 1+ mentions |
MARGARITA (RRID:SCR_009279) | MARGARITA | software resource, software application | Software application that infers genealogies from population genotype data and uses these to map disease loci. These genealogies take the form of the Ancestral Recombination Graph (ARG). The ARG defines a genealogical tree for each locus, and as one moves along the chromosome the topologies of consecutive trees shift according to the impact of historical recombination events. (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154460 | SCR_009279 | 2026-08-12 10:49:57 | 2 |
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