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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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University of Arkansas for Medical Sciences Department of Neurobiology and Developmental Sciences Resource Report Resource Website |
University of Arkansas for Medical Sciences Department of Neurobiology and Developmental Sciences (RRID:SCR_007981) | data or information resource, department portal, portal, organization portal | The Department of Neurobiology and Developmental Sciences is structured around three divisions originally intended as academic entities designed to facilitate and support the growth and development of faculty with common interests. Ideally, this will continue to foster the development of programmatic, interdisciplinary funding which would benefit both young and established faculty. The Divisions also provide leadership opportunities for Senior faculty, as they help the Chair with faculty development. In essence, the divisions are sites for mentoring of faculty who need training and skills in specific areas. Many faculty participate in multiple divisions, depending on their needs, interests, and expertise. The three divisions include the Division of Anatomical Education, the Division of Translational Neuroscience, and the Division of Cellular and Molecular Neuroscience. | nif-0000-03861 | SCR_007981 | UAMS | 2026-08-12 10:49:44 | 0 | |||||||||||
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Genomatix Software: Understanding Gene Regulation Resource Report Resource Website 500+ mentions |
Genomatix Software: Understanding Gene Regulation (RRID:SCR_008036) | portal, data or information resource, short course material, database, narrative resource, software application, training material, data processing software, topical portal, software resource, data analysis software | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 13,2026. Genomatix is a privately held company that offers software, databases, and services aimed at understanding gene regulation at the molecular level representing a central part of systems biology. Its multilayer integrative approach is a working implementation of systems biology principles. Genomatix combines sequence analysis, functional promoter analysis, proprietary genome annotation, promoter sequence databases, comparative genomics, scientific literature data mining, pathway databases, biological network databases, pathway analysis, network analysis, and expression profiling into working solutions and pipelines. It also enables better understanding of biological mechanisms under different conditions and stimuli in the biological context of your data. Some of Genomatix'' most valuable assets are the strong scientific background and the years of experience in research & discovery as well as in development & application of scientific software. Their firsthand knowledge of all the complexities involved in the in-silico analysis of biological data makes them a first-rate partner for all scientific projects involving the evaluation of gene regulatory mechanisms. The Genomatix team has more than a decade of scientific expertise in the successful application of computer aided analysis of gene regulatory networks, which is reflected by more than 150 peer reviewed scientific publications from Genomatix'' scientists More than 35,000 researchers in industry and academia around the world use this technology. The software available in Genomatix are: - GenomatixSuite: GenomatixSuite is our comprehensive software bundle including ElDorado, Gene2Promoter, GEMS Launcher, MatInspector and MatBase. GenomatixSuite PE also includes BiblioSphere Pathway Edition. Chromatin IP Software - RegionMiner: Fast, extensive analysis of genomic regions. - ChipInspector: Discover the real power of your microarray data. Genome Annotation Software - ElDorado: Extended Genome Annotation. - Gene2Promoter: Retrieve & analyze promoters - GPD: The Genomatix Promoter Database, which is now included with Gene2Promoter. Knowledge Mining Software - BiblioSpere : The next level of pathway/genomics analysis. - LitInspector: Literature and pathway analysis for free. Sequence Analysis Software - GEMS Launcher: Our integrated collection of sequence analysis tools. - MalInspector: Search transcription factor binding sites - MatBase: The transcription factor knowledge base. Other (no registration required) Software - DiAlign: Multiple alignment of DNA/protein sequence. - Genomatix tools: Various small tools for sequence statistics, extraction, formatting, etc. | effect, expression, functional, gene, genome, alignment, analysis, annotation, biological, cascade, cell, data, dna, in-silico analysis, mechanism, metabolic pathway, microarray, mining, molecular, network, pathway, promoter, protein, region, regulation, scientific, sequence, signaling, software, stimulus, systems biology, technology, text mining, transcription, FASEB list | has parent organization: Genomatix Solutions | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10236 | http://www.genomatix.de/products/index.html | SCR_008036 | Genomatix | 2026-08-12 10:49:45 | 887 | |||||||
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INFEVERS Resource Report Resource Website 10+ mentions |
INFEVERS (RRID:SCR_007738) | Infevers | service resource, data or information resource, data set, data repository, storage service resource | Registry for Familial Mediterranean Fever (FMF) and hereditary inflammatory disorders mutations. As of 2014, it includes twenty genes including: MEFV, MVK, TNFRSF1A, NLRP3, NOD2, PSTPIP1, LPIN2 and NLRP7, and contains over 1338 sequence variants. Confidential data, simple and complex alleles are accepted. For each gene, a menu offers: 1) a tabular list of the variants that can be sorted by several parameters; 2) a gene graph providing a schematic representation of the variants along the gene; 3) statistical analysis of the data according to the phenotype, alteration type, and location of the mutation in the gene; 4) the cDNA and gDNA sequences of each gene, showing the nucleotide changes along the sequence, with a color-based code highlighting the gene domains, the first ATG, and the termination codon; and 5) a download menu making all tables and figures available for the users, which, except for the gene graphs, are all automatically generated and updated upon submission of the variants. The entire database was curated to comply with the HUGO Gene Nomenclature Committee (HGNC) and HGVS nomenclature guidelines, and wherever necessary, an informative note was provided. | sequence variant, mutation, allele, genetics, dna, rna, protein, disease, heredity, inflammation, gene, function, phenotype, complex allele, simple allele, exon, intron, cdna sequence, genomic sequence, gdna, FASEB list |
is listed by: re3data.org is related to: Human Genome Variation Society is related to: HGNC |
Familial Mediterranean Fever, Auto-inflammatory Disorder, Hereditary Auto-inflammatory Disorder | European Union | PMID:18409191 PMID:15300846 PMID:12520003 |
Acknowledgement required, Free, Public | nif-0000-03022, r3d100010548 | http://fmf.igh.cnrs.fr/infevers, https://doi.org/10.17616/R3B61B | SCR_007738 | Internet Fevers | 2026-08-12 10:49:48 | 41 | |||
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University of Utah Salt Lake City Utah. Pharmacology & Toxicology Resource Report Resource Website 10+ mentions |
University of Utah Salt Lake City Utah. Pharmacology & Toxicology (RRID:SCR_007537) | data or information resource, department portal, portal, organization portal | The Department of Pharmacology and Toxicology at the University of Utah is located in Salt Lake City at the foot of the beautiful Wasatch Range of the Rocky Mountains. Our Department focuses on research, graduate and professional training, and service. The faculty of this department place a high priority on the teaching and research training of graduate students for the Ph.D. degree. Our program features close working relationships between individual students and their faculty mentor, rich and diverse research opportunities, and individualized programs of study based on the needs of the students. Doctoral graduates of our program gain employment in research and teaching positions at colleges and universities, engage in research and development in the biotechnology and pharmaceutical industries, and have additional opportunities in research institutes, government agencies, environmental protection organizations, and many other arenas. Our Summer Undergraduate Research Fellowship (SURF) Program provides enriching research experiences for undergraduate students anticipating research careers in the biological sciences. | nif-0000-02279 | SCR_007537 | Utah | 2026-08-12 10:49:38 | 17 | |||||||||||
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University of South Alabama Department of Pharmacology Resource Report Resource Website |
University of South Alabama Department of Pharmacology (RRID:SCR_007532) | data or information resource, department portal, portal, organization portal | The Department of Pharmacology is a program that combines an interdisciplinary core curriculum, advanced coursework and original research, and is designed to give students a broad interdisciplinary base and flexibility. Research training is offered in each of six formal advanced programs organized around traditional disciplines basic to medicine: Biochemistry and Molecular Biology, Cell Biology and Neuroscience, Microbiology and Immunology, Molecular and Cellular Pharmacology, or Physiology, and in the interdisciplinary Cancer Biology Program. There are also a number of research focus areas shared among the graduate faculty in the College of Medicine. | nif-0000-02252 | http://www.southalabama.edu/com/pharmacology/ | SCR_007532 | South Alabama | 2026-08-12 10:49:47 | 0 | ||||||||||
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ActiveDriver Resource Report Resource Website 10+ mentions |
ActiveDriver (RRID:SCR_008104) | ActiveDriver | sequence analysis software, software application, data processing software, software resource, data analysis software | A statistical method for interpreting variations in protein sequence (e.g. coding SNPs in the population, SNVs in cancer genomes) in the context of protein post-translational signaling modifications. | Protein sequence variation, variation interpretation, protein sequence, protein post-translational signaling modifications, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:ActiveDriver, OMICS_00140 | http://reimandlab.org/software/activedriver/, https://cran.r-project.org/web/packages/ActiveDriver/ActiveDriver.pdf, https://bio.tools/ActiveDriver | SCR_008104 | 2026-08-12 10:49:39 | 27 | |||||||
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University of South Alabama Department of Cell Biology and Neuroscience Resource Report Resource Website |
University of South Alabama Department of Cell Biology and Neuroscience (RRID:SCR_007531) | data or information resource, department portal, portal, organization portal | Offers graduate program and training. Areas include mechanisms of DNA repair, oligodendrocyte development and maturation, functional neuroanatomy, neurophysiology, cellular responses to oxidative stress, kinesin motor proteins and motility, regulation of nuclear transcription, and hormonal regulation of fertility. Program emphasizes understanding of biological principles at the cellular level and training in the anatomical disciplines to ensure success during career development. To achieve these objectives the department participates extensively in the Interdisciplinary Graduate Curriculum which teaches fundamental biological principles during the first year. After the first year, students select a mentor and begin to focus on a significant research topic. | nif-0000-02250 | http://southmed.usouthal.edu/com/scb/index2.html, http://www.usahealthsystem.com/cellbiology | SCR_007531 | 2026-08-12 10:49:37 | 0 | |||||||||||
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Rfam Resource Report Resource Website 1000+ mentions |
Rfam (RRID:SCR_007891) | Rfam, RFAM | service resource, production service resource, data or information resource, database, analysis service resource, data analysis service | The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: Non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion. Rfam is also available via FTP. You can find data in Rfam in various ways... * Analyze your RNA sequence for Rfam matches * View Rfam family annotation and alignments * View Rfam clan details * Query Rfam by keywords * Fetch families or sequences by NCBI taxonomy * Enter any type of accession or ID to jump to the page for a Rfam family, sequence or genome | family, genome, clan, structure, non-coding rna, FASEB list | has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom | Howard Hughes Medical Institute ; University of Manchester; Manchester; United Kingdom ; Wellcome Trust WT077044/Z/05/Z |
PMID:21062808 | http://rfam.sanger.ac.uk/ | SCR_007891 | RFAM, Rfam database | 2026-08-12 10:49:48 | 4040 | ||||||
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University of Rochester Department of Neuroscience Resource Report Resource Website |
University of Rochester Department of Neuroscience (RRID:SCR_007530) | data or information resource, department portal, portal, organization portal | Department that includes over 60 faculty members in ten different departments from both the School of Medicine and Dentistry and The College of Arts and Sciences. Several graduate and undergraduate degree programs exist on campus that are designed to meet the diverse needs and interests of students engaged in the study of the nervous system. The tight physical proximity of the medical and main campuses generates a highly collaborative and interactive Neuroscience community, and provides students with broad and flexible opportunities in their training. | has parent organization: University of Rochester; New York; USA | nif-0000-02248 | http://www.bcs.rochester.edu/neuroscience/ | SCR_007530 | 2026-08-12 10:49:44 | 0 | ||||||||||
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University of Texas at San Antonio Laboratory of Professor Brenda Claiborne Resource Report Resource Website 1+ mentions |
University of Texas at San Antonio Laboratory of Professor Brenda Claiborne (RRID:SCR_008064) | UTSA Claiborne Lab | portal, data or information resource, data set, organization portal, laboratory portal | The long-term goals of my research are to understand the relationship between neuronal structure and function, and to elucidate the factors that affect neuronal morphology and function over the lifespan of the mammal. Currently we are examining 1) the effects of synaptic activity on neuronal development; 2) the effects of estrogen on neuronal morphology and on learning and memory; and, 3) the effects of aging on neuronal structure and function. We have focused our efforts on single neurons in the hippocampal formation, a region that is critical for certain forms of learning and memory in rodents and humans. From the portal, you may click on a cell in your region of interest to see the complete database of cells from that region. You may also explore the Neuron Database: * Comparative Electrotonic Analysis of Three Classes of Rat Hippocampal Neurons. (Raw data available) * Quantitative, three-dimensional analysis of granule cell dendrites in the rat dentate gyrus. * Dendritic Growth and Regression in Rat Dentate Granule Cells During Late Postnatal Development.(Raw data available) * A light and electron microscopic analysis of the mossy fibers of the rat dentate gyrus. | neuronal, structure, synaptic activity, rodent, human, neuron, neuronal morphology, synapse, neuronal development, learning, memory, estrogen, hippocampus, hippocampal formation, mammal, cell | has parent organization: University of Texas at San Antonio; Texas; USA | Aging | nif-0000-10481 | SCR_008064 | USTA Laboratory of Professor Brenda Claiborne | 2026-08-12 10:49:45 | 1 | |||||||
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University of Rhode Island College of Pharmacy Graduate Programs Resource Report Resource Website |
University of Rhode Island College of Pharmacy Graduate Programs (RRID:SCR_007529) | data or information resource, department portal, portal, organization portal | The University of Rhode Island College of Pharmacy is a professional school, but it is also an integral part of University of Rhode Island. The College of Pharmacy fosters a learning-centered, research-oriented educational environment that encourages individuals to make positive life-long contributions to global health. We prepare professional degree students to provide compassionate pharmacist-delivered patient care, and inspire our students through innovative problem-based learning, rich experiential curricula and inter-professional collaboration. We foster a community of scholars who will further the body of knowledge in pharmaceutical, biomedical, and clinical sciences. We strive to improve quality of life: locally, nationally and globally. | nif-0000-02244 | SCR_007529 | URI | 2026-08-12 10:49:47 | 0 | |||||||||||
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University of North Dakota Department of Pharmacology Physiology and Therapeutics Resource Report Resource Website |
University of North Dakota Department of Pharmacology Physiology and Therapeutics (RRID:SCR_007523) | portal, data or information resource, department portal, graduate program resource, organization portal | Department of Pharmacology, Physiology and Therapeutics at the University of North Dakota School of Medicine and Health Sciences is strongly committed to providing their students and the people of North Dakota excellent programs in education, research and service and they are dedicated to the development of leadership, innovation, and scholarly excellence. The translation of fundamental knowledge in the basic sciences to medically relevant problems is a major goal of the department and they are capable of providing the individualized attention and training necessary for the development of the medical scientist of the future. | nif-0000-02233 | http://www.med.und.nodak.edu/depts/pharm/ | SCR_007523 | UND | 2026-08-12 10:49:44 | 0 | ||||||||||
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ERIC Resource Report Resource Website 500+ mentions |
ERIC (RRID:SCR_007644) | ERIC | service resource, data or information resource, production service resource, database, analysis service resource, data analysis service | ERIC is a resource of annotated enterobacterial genomes. Information is available and accessed through a open web portal uniting biological data and analysis tools. ERIC contains information on Escherichia, Shigella, Salmonella, Yersinia, and other microorgansims. ERIC has recently been moved over to PATRIC: The PATRIC BRC is now responsible for all bacterial species in the NIAID Category A-C Priority Pathogen lists for biodefense research, and pathogens causing emerging/reemerging infectious diseases. For ERIC users, we understand that the resource was valuable to your work. As such, we will be doing our very best to create a useful PATRIC resource to continue supporting your work. We realize that the transition will cause disruptions. However, it is a priority for us to work with established BRC users and communities to identify and prioritize our transition efforts. We have concentrated on the transfer of genomic data for this initial release. We anticipate adding new data, tools, and website features over the next several months. We look forward to working with you during the next 5 years., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | enterobacteria, enterobacteria pathogen, biodefense, disease bioinformatics, human disease, pathogen, pathogenic bacteria, cronobacter, enterobacter, erwinia, klebsiella, pectobacterium, photorhabdus, proteus, serratia, escherichia, shigella, salmonella, yersinia, citrobacter, FASEB list | has parent organization: Virginia Polytechnic Institute and State University; Virginia; USA | NIAID | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02813 | http://www.ericbrc.org | SCR_007644 | Enteropathogen Resource Integration Center (ERIC), Enteropathogen Resource Integration Center | 2026-08-12 10:49:48 | 950 | |||||
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Salk Institute for Biological Studies: Jude Mitchells Neuron Exchange and Matlab Analysis Resource Report Resource Website |
Salk Institute for Biological Studies: Jude Mitchells Neuron Exchange and Matlab Analysis (RRID:SCR_008055) | data or information resource, data visualization software, database, rendering software, software application, data processing software, software resource | This resource contains to MATLAB code to make and show videos that can be acquired for free. Data for the movies came from a Macaque attention task. Data on this page came from the multiple-object tracking attention task in a Macaque: The monkeys fixated the white dot at the center of the computer monitor, and four striped stimuli appeared. Their eye position was monitored using an IR camera. The red cross shows where the eyes were pointing throughout each trial. The circle shows the location of the receptive field of the neuron under study during the recording. At the beginning of each trial, either one or two of the stimuli were highlighted, indicating to the monkey that they were the targets of attention. The stimuli then moved to new locations and paused, with one stimulus in the receptive field. After a brief pause, they moved to new locations and the fixation point disappeared. The monkey was rewarded with juice if it then looked at the cued targets. Attention Dask Demo (Avi File) contains Matlab code to make and show movies. Publication from this Dataset: * Differential attention-dependent response modulation across cell classes in macaque visual area V4. JF Mitchell, KA Sundberg, JH Reynolds. Neuron, 2007, 55. 131-141. * Supplemental Material, Neuron, 2007, 55. 131-141. :A Subset of data can be downloaded with analysis routines (easiest to download whole set with full subdirectory structure). Additionally, neuron data files can also be downloaded. :* Routines for Fano Factor, Autocorrelation, and Power Spectra (poster above): :o Plots Spike Waveform and Tests if Significant Visual Response: basic_info.m :o Firing Rate and Fano Factor Analysis (Mitchell et. al, 2007): rate_fano_psth.m :* Routines for Spike-LFP Coherence: :o Spike-LFP Coherence with Rate Normalization (attempting Womelsdorf & Fries, Cosyne, 2008): rate_normalized_coherence.m Sponsors: This work was supported by a grant from the National Eye Institute (EY016161, J.F.M. and J.H.R.), a National Institutes of Health Training Fellowship (J.F.M.), and a National Science Foundation Graduate Research Fellowship (K.A.S.). | code, matlab, movies, video, eye tracking device | nif-0000-10412 | SCR_008055 | Salk Insitute (J. Mitchel) | 2026-08-12 10:49:48 | 0 | ||||||||||
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Sequenced Treatment Alternatives to Relieve Depression Study Resource Report Resource Website 10+ mentions |
Sequenced Treatment Alternatives to Relieve Depression Study (RRID:SCR_008051) | STAR*D | research forum portal, portal, data or information resource, clinical trial, disease-related portal, topical portal | A nationwide public health clinical trial conducted to determine the effectiveness of different treatments for people with major depression, in both primary and specialty care settings, who have not responded to initial treatment with an antidepressant. This is the largest and longest study ever done to evaluate depression treatment. The study is completed and no longer recruiting participants. Each of the four levels of the study tested a different medication or medication combination. The primary goal of each level was to determine if the treatment used during that level could adequately treat participants����?? major depressive disorder (MDD). Those who did not become symptom-free could proceed to the next level of treatment. The design of the STAR*D study reflects what is done in clinical practice because it allowed study participants to choose certain treatment strategies most acceptable to them and limited the randomization of each participant only to his/her range of acceptable treatment strategies. No prior studies have evaluated the different treatment strategies in broadly defined participant groups treated in diverse care settings. Over a seven-year period, the study enrolled 4,041 outpatients, ages 18-75 years, from 41 clinical sites around the country, which included both specialty care settings and primary medical care settings. Participants represented a broad range of ethnic and socioeconomic groups. All participants were diagnosed with MDD, were already seeking care at one of these sites, and were referred to the trial by their doctors. * STAR*D Study Medications: Citalopram (Celexa), Sertraline (Zoloft), Bupropion SR (Wellbutrin SR), Venlafaxine XR (Effexor XR), Buspirone (BuSpar), Mirtazapine (Remeron), Triiodothyronine (T3) (Cytomel), Nortriptyline (Pamelor, Aventyl), Tranylcypromine (Parnate), Lithium (Eskalith, Lithobid) *STAR*D Talk Therapy:Cognitive Therapy | depressive disorder, clinical trial, major depressive disorder, adult |
is used by: Limited Access Datasets From NIMH Clinical Trials is related to: NIMH Repository and Genomics Resources has parent organization: University of Pittsburgh; Pennsylvania; USA |
NIMH | PMID:17074942 PMID:15061154 |
nif-0000-10312 | http://www.star-d.org/ | SCR_008051 | Sequenced Treatment Alternatives to Relieve Depression (STAR*D) Study, NIMH Sequenced Treatment Alternatives to Relieve Depression (STAR*D) Study, NIMH Sequenced Treatment Alternatives to Relieve Depression Study | 2026-08-12 10:49:45 | 12 | |||||
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OpenWetWare Resource Report Resource Website 1+ mentions |
OpenWetWare (RRID:SCR_008053) | OWW | portal, data or information resource, narrative resource, experimental protocol, community building portal, blog, wiki | OpenWetWare is an effort to promote the sharing of information, know-how, and wisdom among researchers and groups who are working in biology & biological engineering. OWW provides a place for labs, individuals, and groups to organize their own information and collaborate with others easily and efficiently. In the process, the hope is that OWW will not only lead to greater collaboration between member groups, but also provide a useful information portal to our colleagues, and ultimately the rest of the world. OWW''s approaches to achieve their goals: # Lower the technical barriers to sharing and dissemination of knowledge in biological research # Build a community of researchers in biology and biological engineering that values, practices, and innovates the open sharing of information # Integrate OpenWetWare into existing and future reward structures in research | biological engineering, biological research, biology, collaboration, community, information, lab, portal, sharing, structure, material resource, media, enzyme, buffer, reporter, page, fixative, detergent, electrophoresis, agarose gel electrophoresis, protease, acid, base, rna polymerases, antibiotic, chemical, rna polymerase, dna ligase, dna polymerase, phosphatase, dye, stain, fluorescent protein | has parent organization: BioBricks Foundation | NSF ; Massachusetts Institute of Technology; Massachusetts; USA |
nif-0000-10393 | SCR_008053 | 2026-08-12 10:49:39 | 3 | ||||||||
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MetaCore Resource Report Resource Website 1000+ mentions |
MetaCore (RRID:SCR_008125) | data processing software, data analysis software, software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 17, 2022. An integrated software suite for functional analysis of experimental data. The scope of data types includes microarray and SAGE gene expression, SNPs and CGH arrays, proteomics, metabolomics, pathway analysis, Y2H and other custom interactions. MetaCore is based on a proprietary manually curated database of human protein-protein, protein-DNA and protein compound interactions, metabolic and signaling pathways and the effects of bioactive molecules in gene expression. | expression, gene, dna, interaction, metabolomics, microarray, pathway, protein, proteomic, software | is listed by: Metabolomics Workbench | THIS RESOURCE IS NO LONGER IN SERVICE. | nif-0000-20874 | http://www.genego.com/metacore.php | SCR_008125 | 2026-08-12 10:49:45 | 1182 | ||||||||
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Wright Cell Imaging Facility Resource Report Resource Website 1+ mentions |
Wright Cell Imaging Facility (RRID:SCR_008488) | image analysis software, image processing software, software application, data processing software, software resource | The ImageJ installations below correspond to the WCIF ImageJ manual. The manual is written for this particular installation of ImageJ. This ImageJ installation has, among other plugins, one that links to an online version of the manual. The online manual is more up-to-date than the PDF version. Windows users Download WCIF ImageJ bundle (~23Mb) v1.34i, 3rd March 2005 with J2SE 5.0 (formerly J2SE 1.5). For Windows: download and run program. Mac and Linux users Download your OS specific version of ImageJ from the ImageJ website then extract the following file to the plugins folder. Download WCIF ImageJ bundle plugins only (~2Mb) This contains only the plugins, IJ preferences, LUTs and plugin source code. Image Processing and Analysis Software ImageJ LSM Browser (*.lsm) Axiovision viewer (*.zvi) Manufacturers of our microscopes and related equipment Zeiss - Microscopes and imaging systems. P.A.L.M. Microlaser Technologies - Manufacturer of our laser capture system. Sutter Instruments - Micromanipulators. Uniblitz - Shutters. Ludl - Manufacturers of our motorised x-, y-stage Hamamatsu - Digital cameras. Molecular Probes - Dyes and reagents. Scanalytics - Image acquisition and processing software. MicroBrightField - Developers of the Neurolucida and Stereo Investigator software. DVC - Digital cameras. Bitplane - Developers of the Imaris suite of software. AutoQuant - Developers of the AutoDeblur deconvolution software | nif-0000-30471 | SCR_008488 | Wright Cell Imaging Facility | 2026-08-12 10:49:47 | 5 | |||||||||||
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QIIME Resource Report Resource Website 10000+ mentions |
QIIME (RRID:SCR_008249) | data processing software, data analysis software, software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 23,2023.Software package for comparison and analysis of microbial communities, primarily based on high-throughput amplicon sequencing data, but also supporting analysis of other types of data. QIMME analyzes and transforms raw sequencing data generated on Illumina or other platforms to publication quality graphics and statistics. | microbiome, microbial community, sequence data, data analysis software, bio.tools |
is used by: SortMeRNA is used by: Nephele is listed by: OMICtools is listed by: Human Microbiome Project is listed by: Debian is listed by: bio.tools is listed by: SoftCite has parent organization: University of Colorado Boulder; Colorado; USA |
DOI:10.1038/nmeth.f.303 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01118, SCR_011948, OMICS_01521, biotools:qiime | https://bio.tools/qiime | SCR_008249 | Quantitative Insights Into Microbial Ecology | 2026-08-12 10:49:45 | 11177 | ||||||
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RIKEN Omics Science Center Resource Report Resource Website |
RIKEN Omics Science Center (RRID:SCR_008241) | research forum portal, portal, data or information resource, disease-related portal, topical portal | Omics Science Center is aiming to develop a comprehensive system called Life Science Accelerator(LSA) for the advancement of omics research. The LSA is a comprehensive system consists of biological resources, human resources, technologies, know-how, and essential administrative ability. Ultimate goal of LSA is to support and accelerate the advancement in life science research. Omics is the comprehensive study of molecules in living organisms. The complete sequencing of genomes (the complete set of genes in an organism) has enabled rapid developments in the collection and analysis of various types of comprehensive molecular data such as transcriptomes (the complete set of gene expression data) and proteomes (the complete set of intracellular proteins). Fundamental omics research aims to link these omics data to molecular networks and pathways in order to advance the understanding of biological phenomena as systems at the molecular level. | expression, gene, genome, human, intracellular, life, living, model organisms and comparative genomics databases, molecule, omics, organism, pathway, protein, proteome, science, sequence, technology, transcriptome | is parent organization of: FANTOM DB | RIKEN Yokohama Institute Yokohama Research Promotion Division of Japan | nif-0000-21361 | SCR_008241 | RIKEN OSC | 2026-08-12 10:49:49 | 0 |
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