Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Condor Resource Report Resource Website 1+ mentions |
Condor (RRID:SCR_017664) | software resource, software application | Condor project maintains, distributes, and supports variety of computing systems that are deployed by commercial and academic interests world wide. Explores social and technical problems of cooperative computing on scales ranging from desktop to world wide computational Grid. | GRID computing software, Distributed Computing Engine, computing, system, maintain, distribute, support | has parent organization: California Institute of Technology; Pasadena; USA | DOI:10.1002/cpe.938 | Free, Freely available | https://research.cs.wisc.edu/htcondor/manual/v7.8/index.html | SCR_017664 | 2026-08-12 10:51:48 | 7 | ||||||||
|
FLIMfit Resource Report Resource Website 1+ mentions |
FLIMfit (RRID:SCR_016298) | software toolkit, software resource, software application | Software package for quantitative analysis of large Fluorescence Lifetime Imaging Microscopy (FLIM) data, including global analysis. It is able to routinely analyse multi-well plate FLIM datasets on conventional PC workstations in a reasonable time., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | fluorescence, lifetime, imaging, microscopy, dataset, global, analysis, multiwell, plate, routine | United Kingdom Biotechnology and Biological Sciences Research Council BBSRC BB/E003621/1; United Kingdom Technology Strategy Board Technology Award CHBT/007/00030; Wellcome Trust WT 095931/Z/11/Z |
PMID:23940626 DOI:10.1371/journal.pone.0070687 |
THIS RESOURCE IS NO LONGER IN SERVICE | https://github.com/flimfit/FLIMfit | SCR_016298 | 2026-08-12 10:51:32 | 6 | ||||||||
|
BioBERT Resource Report Resource Website 50+ mentions |
BioBERT (RRID:SCR_017547) | software resource, software application | Pre-trained biomedical language representation model for biomedical text mining. This repository provides fine-tuning codes of BioBERT, language representation model for biomedical domain, especially designed for biomedical text mining tasks such as biomedical named entity recognition, relation extraction, question answering, etc. | Pretrained, biomedical, language, representation, model, text, mining, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: BERT |
National Research Foundation of Korea | DOI:10.1093/bioinformatics/btz682 | Free, Available for download, Freely available | biotools:biobERt | https://github.com/naver/biobert-pretrained, https://bio.tools/BioBERT | SCR_017547 | Bidirectional Encoder Representations from Transformers for Biomedical Text Mining | 2026-08-12 10:51:46 | 56 | |||||
|
nbdocker Resource Report Resource Website |
nbdocker (RRID:SCR_017159) | software resource, software application | Software tool as Jupyter Notebook extension for Docker. Each Docker container encapsulates its individual computing environment to allow different programming languages and computing environments to be included in one single notebook, provides user to document code as well as computing environment. | Jupyter, notebook, extension, docker, container, code, computing, environment, data | is related to: University of Washington; Seattle; USA | NHLBI U54 HL127624; NIGMS R01 GM126019; Institute of Technology at University of Washington Tacoma |
DOI:10.1101/309567 | Free, Available for download, Freely available | https://hub.docker.com/r/biodepot/nbdocker/ | SCR_017159 | 2026-08-12 10:51:42 | 0 | |||||||
|
MixitWin Resource Report Resource Website |
MixitWin (RRID:SCR_017553) | software resource, software application | Professional feed formulation software for Windows 10 and Macs by Agricultural Software Consultants Inc. Complete feed formulation solution for professional nutritionists and feed producers. Software offers ingredient databases for various domesticated and wild species. | Professional, feed, formulation, Agricultural Software Consultants Inc., | Restricted | SCR_017553 | Mixit-Win | 2026-08-12 10:51:46 | 0 | ||||||||||
|
HomoeologPrimer Resource Report Resource Website 1+ mentions |
HomoeologPrimer (RRID:SCR_017559) | software resource, software application | Software tool as script used to design primers for homoeologs, to amplify either homoeolog specific or all homoeologs. | Design, primer, homoeolog, amplify | Free, Available for download, Freely available | SCR_017559 | 2026-08-12 10:51:46 | 1 | |||||||||||
|
Google Sheets Resource Report Resource Website 10+ mentions |
Google Sheets (RRID:SCR_017679) | software resource, software application | Spreadsheet program included as part of free, web-based software office suite offered by Google within its Google Drive service. Service also includes Google Docs and Google Slides, word processor and presentation program respectively. | Spreadsheet, program, office, suite, Google, Drive, service | Free, Available for download, Freely available | SCR_017679 | Spreadsheets | 2026-08-12 10:51:49 | 21 | ||||||||||
|
SQLite Resource Report Resource Website 50+ mentions |
SQLite (RRID:SCR_017672) | software resource, software application | Relational database management system contained in C library. SQLite is not client server database engine but it is embedded into the end program. | Database, management, system, C library, engine, embedded, the end program | is listed by: SoftCite | Free, Freely available | SCR_017672 | 2026-08-12 10:51:53 | 83 | ||||||||||
|
Cell Type Knowledge Explorer Resource Report Resource Website 1+ mentions |
Cell Type Knowledge Explorer (RRID:SCR_022793) | software resource, software application | Software application to examine multimodal data from thousands of cells across 3 mammalian species. | Allen Brain Map, Cell Type Taxonomies, examine multimodal data, cells across mammalian species |
is related to: Common Cell Type Nomenclature is provided by: BICCN is organization facet of: BICCN |
Free, Freely available | SCR_022793 | Allen Brain Map Cell Type Knowledge Explorer | 2026-08-12 10:52:56 | 4 | |||||||||
|
SigProfilerMatrixGenerator Resource Report Resource Website 10+ mentions |
SigProfilerMatrixGenerator (RRID:SCR_023122) | software resource, software application | Software tool to create mutational matrices for all types of somatic mutations. Used to generate mutational matrices for set of samples with associated mutational catalogues. Used for optimized exploration and visualization of mutational patterns for all types of small mutational events. In addition to extending classification of single base substitutions, provides support for classifying doublet base substitutions and small insertions and deletions. | mutational patterns, small mutational events, create mutational matrices, somatic mutations, samples with associated mutational catalogues, | is related to: SigProfilerExtractor | Cancer Research UK Grand Challenge Award ; Singapore Ministry of Health ; Singapore National Medical Research Council |
PMID:31470794 | Free, Available for download, Freely available | https://osf.io/s93d5/wiki/home | SCR_023122 | 2026-08-12 10:52:42 | 35 | |||||||
|
Inquisit LAB Resource Report Resource Website 1+ mentions |
Inquisit LAB (RRID:SCR_022151) | software resource, software application | Software tool for designing and administering psychological tests and experiments on computers. | Millisecond Software, designing psychological tests, administering psychological tests, psychological experiments on computers | Restricted | SCR_022151 | Inquisit 6 LAB, Inquisit 5 LAB | 2026-08-12 10:52:51 | 2 | ||||||||||
|
EEGsynth Resource Report Resource Website 1+ mentions |
EEGsynth (RRID:SCR_018732) | software resource, software application | Open source Python codebase that provides real-time interface between open-hardware devices for electrophysiological recordings like EEG, EMG, and ECG, and analog and digital devices like MIDI, OSC, and analog synthesizers. This allows one to use electrical brain/body activity to flexibly control devices in real-time. | Codebase, electrophysiological recording, interface, analog, digital device, analog synthesizer, device control, electrical brain activity, EEG, EMG, ECG, BCI, Neurofeedback, Biofeedback, Music, MIDI, OSC, Python | Free, Freely available | https://www.eegsynth.org, http://pypi.org/project/eegsynth/ | SCR_018732 | 2026-08-12 10:52:12 | 2 | ||||||||||
|
PreprintMatch Resource Report Resource Website 1+ mentions |
PreprintMatch (RRID:SCR_022302) | software resource, software application | Software tool to match bioRxiv preprints with their corresponding PubMed paper. | match bioRxiv preprints, corresponding PubMed papers | Restricted | SCR_022302 | 2026-08-12 10:52:41 | 1 | |||||||||||
|
MendelIHT.jl Resource Report Resource Website 1+ mentions |
MendelIHT.jl (RRID:SCR_018292) | software resource, software application | Software Julia package that implements iterative hard thresholding as multiple regression model for GWAS. Built-in support for handling PLINK and VCF files, parallel computing, fits a variety of GLM models, and handles grouping/weighting SNPs. | GWAS, iterative hard thresholding, multiple regression, GLM model, feature selection, bio.tools |
is listed by: bio.tools is listed by: Debian is related to: PLINK |
DOI:10.1101/697755 | Free, Available for download, Freely available | biotools:mendeliht.jl | https://bio.tools/mendeliht.jl | SCR_018292 | Mendel Iterative Hard Thresholding.jl, Mendel Iterative Hard Thresholding, MendelIHT | 2026-08-12 10:52:05 | 2 | ||||||
|
ReMM score Resource Report Resource Website 1+ mentions |
ReMM score (RRID:SCR_023095) | ReMM score | software resource, software application | Software tool that scores positions in human genome in terms of their regulatory probability. Regulatory Mendelian Mutation score was created for relevance prediction of non-coding variations (SNVs and small InDels) in human genome (hg19) in terms of Mendelian diseases. | positions in human genome scoring, regulatory probability, relevance prediction, non-coding variations, SNVs and small InDels, Mendelian diseases, human genome | DOI:10.1101/2022.03.14.484240 | Free, Available for download, Freely available | https://charite.github.io/software-remm-score.html, https://search.datacite.org/works/10.5281/zenodo.1197579 | SCR_023095 | Regulatory Mendelian Mutation score | 2026-08-12 10:52:58 | 6 | |||||||
|
eido Resource Report Resource Website 1+ mentions |
eido (RRID:SCR_021076) | software resource, software application | Software validation tool for Portable Encapsulated Projects or PEPs in python. | validation tool, Portable Encapsulated Projects, PEPs, python | is related to: peppy | DOI:10.1101/2020.10.08.331322 | Free, Available for download, Freely available | https://github.com/pepkit/eido/ | SCR_021076 | 2026-08-12 10:52:29 | 1 | ||||||||
|
insane.py Resource Report Resource Website 1+ mentions |
insane.py (RRID:SCR_022317) | software resource, software application | Software tool for generating custom membranes for molecular simulations. Software Python script to setup Martini bilayer systems. | Generating custom membranes, molecular simulations, Martini bilayer system | DOI:10.1021/acs.jctc.5b00209 | Free, Available for download, Freely available | SCR_022317 | 2026-08-12 10:52:42 | 1 | ||||||||||
|
ACD/ChemSketch Resource Report Resource Website 10+ mentions |
ACD/ChemSketch (RRID:SCR_019272) | software resource, software application | Software tool as molecular structure drawing application by ACD Labs. Allows user to Draw chemical structures, reactions, and schema, and access variety of graphical tools and templates, Generate names from molecular structure and vice versa, Calculate molecular properties from chemical structure, Create professional reports, presentations, and publication ready figures, Communicate scientific information with clarity and ease. | Chemical structure, molecular structure, drawing application, generate molecular structure names, calculate molecular properties, create professional reports, ACD Labs | Restricted | SCR_019272 | ChemSketch | 2026-08-12 10:52:24 | 22 | ||||||||||
|
dandi-cli Resource Report Resource Website 1+ mentions |
dandi-cli (RRID:SCR_019009) | software resource, software application | Command line client to facilitate common operations. | Command line client, facilite common operations, neurophysiology data integration, distributed archives, client | Free, Freely available | SCR_019009 | Distributed Archives for Neurophysiology Data Integration client, DANDI client | 2026-08-12 10:52:17 | 1 | ||||||||||
|
ATLAS.ti Resource Report Resource Website 500+ mentions |
ATLAS.ti (RRID:SCR_022920) | data analytics software, software resource, software application | Software qualitative analysis tool. Used by researchers and practitioners to uncover and systematically analyze complex phenomena hidden in unstructured data including text, multimedia, geospatial. Provides tools that let the user locate, code, and annotate findings in primary data material, to weigh and evaluate their importance, and to visualize relations between them. Consolidates documents and keeps track of all notes, annotations, codes and memos in all fields that require close study and analysis of primary material consisting of text, images, audio, video, and geo data. Provides analytical and visualization tools designed to open new interpretative views on material. | ATLAS.ti Scientific Software Development GmbH, unstructured data analysis, text, images, audio, video, geo data, analytical and visualization tools, locate, code, and annotate findings in primary data material | Restricted | SCR_022920 | ATLAS.ti version no. 5. 2 | 2026-08-12 10:52:57 | 581 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
