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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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WinRHIZO Resource Report Resource Website 10+ mentions |
WinRHIZO (RRID:SCR_017120) | image analysis software, data processing software, software resource, software application | Software toolbox for image analysis by Regent Instruments Inc. Used for root measurement in different forms like morphology, topology, architecture and color analyses. Automatically or interactively analyses washed roots. | image, analysis, root, measurement, plant, morphology, topology, color, Regent Instruments Inc. | Available for purchase | SCR_017120 | 2026-08-13 09:29:54 | 16 | |||||||||||
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autoPROC Resource Report Resource Website 100+ mentions |
autoPROC (RRID:SCR_015748) | software toolkit, data processing software, software resource, software application | Data processing software for X-ray diffraction data. autoPROC is a set of tools and programs to automate steps involved in data processing, such as image analysis, integration, indexing, and determination. | xray, diffraction, data processing, crystallography | European Commission LSHG-CT-2003-503420 | PMID:21460447 | Free for academic use, Available for download | SCR_015748 | 2026-08-13 09:29:17 | 330 | |||||||||
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International Cell Line Authentication Committee Resource Report Resource Website 10+ mentions |
International Cell Line Authentication Committee (RRID:SCR_014414) | ICLAC | data or information resource, organization portal, database, portal | An independent committee established to improve visibility of cell lines and promote awareness and authentication testing to combat false or misidentified cell lines. It contains a databases of cross-contaminated or otherwise misidentified cell lines, as well as resources to familiarize users of cell lines and the problem of misidentification. Their Terms of Reference defines false or misidentified cell lines and other commonly used terms, as well as sets out the committee goals and ground rules. | organization portal, database, cell line, misidentified, false, database, cross contaminated, committee, authentication | SCR_014414 | International Cell Line Authentication Committee (ICLAC) | 2026-08-13 09:29:02 | 21 | ||||||||||
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KOMP2 Resource Report Resource Website 1+ mentions |
KOMP2 (RRID:SCR_017528) | data or information resource, portal, project portal | Knockout Mouse Phenotyping Project, JAX information about their contributions to KOMP2 project. Project to generate and phenotype single gene KO mouse strains from KOMP ES cell lines. Strains are phenotyped using protocols in pipeline designed by International Mouse Phenotyping Consortium. There are three NIH-funded phenotyping centers in United States: JAX, BaSH Consortium (Baylor College of Medicine, the Wellcome Trust Sanger Institute and MRC Harwell), and the DTCC Consortium (University of California at Davis, the Toronto Center for Phenogenomics, Children’s Hospital Oakland Research Institute (CHORI) and Charles River ). | Generate, phenotype, single, gene, KO mouse, strain, KOMP ES cell line, IMPC, JAX |
is related to: International Mouse Phenotyping Consortium (IMPC) is related to: Knockout Mouse Project is related to: Knockout Mouse Project |
NIH | Free, Freely available | SCR_017528 | Knockout Mouse Phenotyping Project | 2026-08-13 09:29:44 | 2 | ||||||||
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DRIFTER Resource Report Resource Website 10+ mentions |
DRIFTER (RRID:SCR_014937) | image analysis software, data processing software, software resource, software application | Model based Bayesian method for eliminating physiological noise from fMRI data. This algorithm uses image voxel analysis to isolate the cardiac and respiratory noise from the relevant data. | bayesian, physiological noise, fMRI, algorithm, cardiac, respiratory, image anaylsis, bold signal | has parent organization: Aalto University; Espoo; Finland | NICHD R01HD040712; NINDS R01NS037462; NINDS R01NS048279; NCR P41RR014075; NIMH R01MH083744; NIDCD R21DC010060; NIBIB R21EB007298; National Science Council Taiwan NSC 98-2320-B-002-004-MY3; National Science Council Taiwan NSC 100-2325-B-002-046; National Health Research Institute Taiwan NHRI-EX100-9715EC; Academy of Finland 124698; Academy of Finland 125349; Academy of Finland 127624; Academy of Finland 129670; Academy of Finland 218054; Academy of Finland 218248 |
PMID:22281675 | Free, Available for download, Acknowledgement requested | SCR_014937 | DRIFTER Toolbox | 2026-08-13 09:29:06 | 28 | |||||||
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Pannoramic Viewer Resource Report Resource Website 10+ mentions |
Pannoramic Viewer (RRID:SCR_014424) | image analysis software, data processing software, software resource, software application | Software tool as a digital virtual microscope for viewing and moving scanned histological slides and for making annotations and measurements on them. Used in digital pathology. Helps to simplify the areas of the pathology workflow where imaging, slide digitization, storage, archivation, visualization and analysis are performed. | microscope, image analysis, annotate image, image annotation, virtual microscope | Restricted | SCR_016296 | SCR_014424 | 2026-08-13 09:29:11 | 47 | ||||||||||
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Studylog Resource Report Resource Website 1+ mentions |
Studylog (RRID:SCR_016682) | data or information resource, organization portal, service resource, portal | Commerciall organization to develop study protocols collaboratively to run and manage animal research studies for academic, government, biotech and pharmaceutical labs. Provides services, including product installation and configuration, user training, customization services and ongoing support. | develop, study, protocol, collaborative, animal, research | SCR_016682 | 2026-08-13 09:29:46 | 5 | ||||||||||||
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PsychENCODE Knowledge Portal Resource Report Resource Website 10+ mentions |
PsychENCODE Knowledge Portal (RRID:SCR_017500) | data or information resource, database, portal, project portal | Portal of PsychENCODE Consortium to study role of rare genetic variants involved in several psychiatric disorders. Database of regulatory elements, epigenetic modifications, RNA and protein in brain. | Rare, genetic, variant, psychiatric, disorder, regulatory, element, epigenetic, modification, RNA, protein, brain | Restricted | SCR_017500 | 2026-08-13 09:29:44 | 15 | |||||||||||
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Viagen Biotech Resource Report Resource Website 1+ mentions |
Viagen Biotech (RRID:SCR_017106) | material resource, reagent supplier | Commercial provider of innovative DNA extraction technologies and products for life science research. Reagents for preparation of DNA from mouse tails, ear pieces, yolk sac, and culture cells, DNA extracts, DNA markers. | Commercial, company, DNA, reagent, extraction, marker, biomedical | SCR_017106 | Viagen Biotech Inc. | 2026-08-13 09:29:37 | 1 | |||||||||||
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Object-Image Resource Report Resource Website 10+ mentions |
Object-Image (RRID:SCR_015720) | image analysis software, data processing software, software resource, software application | Image analysis software package that allows non-destructive image marking, input for further image processing, and marking the results of automatic measurements. Object-Image integrates measurements, macros, graphical objects and image names in a closed unit called 'object file' so that it reduces file clutter. | image marking, non-destructive, image analysis, text editor, debugging software | is related to: NIH Image | Free, Available for download, Runs on Mac OS | simon.bio.uva.nl/Object-Image/object-image.html | SCR_015720 | 2026-08-13 09:29:27 | 19 | |||||||||
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HMS LINCS Center Resource Report Resource Website 10+ mentions |
HMS LINCS Center (RRID:SCR_016370) | HMS LINCS | data or information resource, organization portal, portal | Center that is part of the NIH Library of Integrated Network-based Cellular Signatures (LINCS) Program. Its goals are to collect and disseminate data and analytical tools needed to understand how human cells respond to perturbation by drugs, the environment, and mutation. | LINCS, Program, library, network, cell, signature, analysis, drugs, human, research |
is related to: HMS LINCS Database has parent organization: Harvard Medical School; Massachusetts; USA |
NHLBI U54 HL127365 | PMID:29199020 | SCR_016370 | LINCS Center, Harvard Medical School LINCS Center, Harvard Medical School LINCS, Harvard Medical School (HMS) LINCS Center | 2026-08-13 09:29:25 | 15 | |||||||
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Inxight Resource Report Resource Website 10+ mentions |
Inxight (RRID:SCR_016490) | data or information resource, organization portal, database, portal | Portal of NCATS (the National Center for Advancing Translational Sciences) for drug development information including:US approved drugs, marketed drugs, investigational drugs. Provides manually curated data supplied by the FDA and private companies. Provides drugs marketing and regulatory status, drug ingredient definitions, biological activity and clinical use. | drug, development, information, approved, marketed, investigational, data, supply, FDA, company, regulatory, status, ingredient, definition, biological, activity, clinical, use | NIH | Free, Freely available | SCR_016490 | 2026-08-13 09:29:44 | 16 | ||||||||||
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PALEOMIX Resource Report Resource Website 50+ mentions |
PALEOMIX (RRID:SCR_015057) | software toolkit, data processing software, software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Software toolkit for the processing of ancient and modern HTS data. PALEOMIX also aids in metagenomic analysis of the extracts from the HTS processing. | hts data, high-throughput sequencing, ancient dna, adna, bio.tools |
is listed by: Debian is listed by: bio.tools |
PMID:24722405 DOI:10.1038/nprot.2014.063 |
THIS RESOURCE IS NO LONGER IN SERVICE | biotools:paleomix, OMICS_03749 | https://bio.tools/paleomix, https://sources.debian.org/src/paleomix/ | SCR_015057 | 2026-08-13 09:29:07 | 66 | |||||||
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NeLS Resource Report Resource Website 1+ mentions |
NeLS (RRID:SCR_016301) | NeLS | data or information resource, organization portal, portal | Web portal for the administration of Norwegian e-Infrastructure for Life Sciences. Enables Norwegian life scientists and their international collaborators to store, share, archive, and analyse their genomics scale data. NeLS is one of the packages of the ELIXIR.NO project. | genomic, data, analyze, store, share, archive, electronic, infrastructure, administration, Norway, bio.tools |
is listed by: bio.tools is listed by: Debian |
Research Council of Norway | Free, Freely available | biotools:nels | https://bio.tools/nels, https://github.com/elixir-no-nels/nels-core, https://bio.tools/nels | SCR_016301 | Norwegian e-Infrastructure for Life Sciences | 2026-08-13 09:29:25 | 3 | |||||
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National Plant Germplasm System (NPGS) Resource Report Resource Website 10+ mentions |
National Plant Germplasm System (NPGS) (RRID:SCR_016785) | NPGS | data or information resource, organization portal, portal | Cooperative effort by U.S. state and federal government and private organizations to preserve the genetic diversity of plants. The NPGS aids scientists and the need for genetic diversity by acquiring, preserving, evaluating, documenting and distributing crop germplasm. The NPGS is managed by the Agricultural Research Service (ARS), the in-house research agency of the United States Department of Agriculture (USDA). Funding for the NPGS comes primarily through appropriations from the U.S. Congress. | preserve, genetic, diversity, plant, germplasm, agriculture | U.S. Congress | SCR_016785 | National Plant Germplasm System, NPGS | 2026-08-13 09:29:48 | 23 | |||||||||
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CAPT Resource Report Resource Website 1+ mentions |
CAPT (RRID:SCR_016305) | image analysis software, data processing software, software resource, software application | Software for molecular weight, quantification of bands, colony counting and distance calculation in Vilber Lourmat gel documentation imaging systems. Used in molecular biology laboratories. | gel, image, molecular, weight, quantification, band, colony, count, distance, calculation, imaging, system | Commercially available | SCR_016305 | 2026-08-13 09:29:39 | 4 | |||||||||||
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Cancer Imaging Phenomics Toolkit Resource Report Resource Website 10+ mentions |
Cancer Imaging Phenomics Toolkit (RRID:SCR_017323) | CaPTk | image analysis software, data processing software, software resource, software application | Software platform for analysis of radiographic cancer images. Used as quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome. | analysis, radiographic, cancer, image, quantitative, analytics | is related to: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA | Cancer | NCI U24 CA189523 | PMID:29340286 | Free, Available for download, Freely available | https://github.com/CBICA/CaPTk/ | SCR_017323 | Cancer Imaging Phenomics Toolkit | 2026-08-13 09:29:41 | 11 | ||||
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DOAF Resource Report Resource Website 1+ mentions |
DOAF (RRID:SCR_015666) | DOAF | data or information resource, database, portal, project portal | Project portal for a collaborative database aiming to provide a comprehensive annotation to human genome.It uses the computable, controlled vocabulary of Disease Ontology (DO) and NCBI Gene Reference Into Function (GeneRIF). | disease ontology, annotation, collaboration, collaborative project, java, perl, rubby |
uses: Human Disease Ontology is related to: NUgene Project is related to: Gene Ontology is related to: OBO has parent organization: Northwestern University; Illinois; USA |
NCRR 1R01RR025342; CTSA UL1RR025741 |
PMID:23251346 | Public, Available for download, Tutorial Available | SCR_015666 | Disease Ontology Annotation Framework, Disease Ontology Annotation Framework (DOAF) | 2026-08-13 09:29:28 | 1 | ||||||
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Neuroscience Information Toolbox Resource Report Resource Website 10+ mentions |
Neuroscience Information Toolbox (RRID:SCR_014501) | NIT | software toolkit, data processing software, software resource, software application | A toolkit for EEG-fMRI multimodal fusion and fMRI data preprocessing and analysis. NIT allows users to perform batch processing of fMRI data analysis and data preprocessing based on SPM8, as well as parallel computing for data preprocessing, nuisance signals removal, and FCD and FOCA calculating. Users can also use NIT to calculate functional connectivity density and four dimensional (spatio-temporal) consistency of local neural activities. | foca, four dimensional consistency of local neural activities, software toolkit, eeg, fmri, multimodal fusion, parallel framework, fcd, functional connectivity density | Acknowledgement requested, Non-commercial use only, Freeware but not in the public domain | SCR_014501 | Neuroscience Information Toolbox (NIT) | 2026-08-13 09:29:03 | 26 | |||||||||
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GeSeq Resource Report Resource Website 500+ mentions |
GeSeq (RRID:SCR_017336) | data processing software, service resource, software resource, software application | Software tool for rapid and accurate annotation of organelle genomes, in particular chloroplast genomes. | rapid, accurate, annotation, organelle, genome, chloroplast, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
Human Frontier Science Program ; Max Planck Society ; German Science Foundation |
PMID:28486635 | Free, Freely available | biotools:geseq | https://bio.tools/geseq | SCR_017336 | 2026-08-13 09:29:41 | 535 |
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