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https://www.google.com/intl/de/forms/about/
Software for creating surveys and questionnaires.
Proper citation: Google Forms (RRID:SCR_023174) Copy
https://github.com/BGI-shenzhen/VCF2Dis
Software to calculate p-distance matrix based Variant Call Format.
Proper citation: VCF2Dis (RRID:SCR_022513) Copy
https://github.com/sapporo-wes/tonkaz
Software CLI tool to verify workflow reproducibility.
Proper citation: Tonkaz (RRID:SCR_023206) Copy
https://github.com/sapporo-wes/yevis-cli
Software CLI tool to support building and maintaining Yevis workflow registry.
Proper citation: Yevis cli (RRID:SCR_023204) Copy
https://www.flidea.tech/flic-support
Software tool as user interface for running Fly Liquid Food Interaction Counter experiments.
Proper citation: FLIC Monitor (RRID:SCR_018387) Copy
https://github.com/anuprulez/ml-jupyter-notebook
Open source, docker based, and GPU enabled jupyterlab notebook infrastructure that runs on public compute infrastructure of Galaxy Europe for rapid prototyping and developing end-to-end AI projects. Jupyterlab notebook in GPU enabled docker container for machine learning and deep learning.
Proper citation: Docker based GPU enabled Jupyterlab (RRID:SCR_022695) Copy
https://pypi.org/project/pyani/
Software package and script for calculation of genome scale average nucleotide identity. Python3 module that provides support for calculating average nucleotide identity and related measures for whole genome comparisons, and rendering relevant graphical summary output. Where available, it takes advantage of multicore systems, and can integrate with SGE/OGE-type job schedulers for the sequence comparisons.
Proper citation: Pyani (RRID:SCR_021088) Copy
http://bioconductor.org/packages/org.Rn.eg.db/
Software R tool for genome wide annotation for Rat, primarily based on mapping using Entrez Gene identifiers.
Proper citation: org.Rn.eg.db (RRID:SCR_018358) Copy
https://github.com/Frederik-D-Weber/zmax_edf_merge_converter
Software tool for comprehensive conversion of folder with Hypnodyne zmax EDF files into merged European Data Format.
Proper citation: zmax_edf_merge_converter (RRID:SCR_022567) Copy
https://github.com/cobilab/geco3/
Software tool as DNA compressor that uses neural network to do mixing of experts.
Proper citation: GeCo3 (RRID:SCR_018877) Copy
https://github.com/bondarevts/flucalc
Software tool as MSS-MLE calculator for Luria–Delbrück fluctuation analysis.
Proper citation: FluCalc (RRID:SCR_019322) Copy
Software tool for creating solid 3D CAD objects. Used for creating 3D models focusing on CAD aspects of 3D modeling of machine parts. Reads in script file that describes object and renders 3D model from this script file.
Proper citation: OpenSCAD (RRID:SCR_018870) Copy
Open source software application that enables services for online surveys. Provides advanced support for all steps of web survey process. Conduct research and analysis from beginning to end.
Proper citation: 1KA (RRID:SCR_019283) Copy
https://github.com/liqiwei2000/BayesEpiModels
Software tool for accessing performance of different epidemiological models, including both growth and compartmental models, in Bayesian framework.
Proper citation: BayesEpiModels (RRID:SCR_019291) Copy
https://github.com/ParBLiSS/FastANI
Software tool for fast alignment free computation of whole genome Average Nucleotide Identity . Supports pairwise comparison of both complete and draft genome assemblies. to calcualte the average nucleotide identity (ANI) between your samples.
Proper citation: FastANI (RRID:SCR_021091) Copy
Software tool as free color blindness simulator for Windows, Mac and Linux. Design for Color Impaired. Takes guesswork out of designing for color blindness by showing you in real time what people with common color vision impairments will see.Color Oracle is open source, available on GitHub for Mac and Windows/Java.
Proper citation: Color Oracle (RRID:SCR_018400) Copy
https://github.com/compbiolabucf/omicsGAN
Software generative adversarial network to integrate two omics data and their interaction network to generate one synthetic data corresponding to each omics profile that can result in better phenotype prediction. Used to capture information from interaction network as well as two omics datasets and fuse them to generate synthetic data with better predictive signals.
Proper citation: OmicsGAN (RRID:SCR_022976) Copy
https://metacpan.org/dist/Bio-Chado-Schema
Standard object-relational mapping layer for use with GMOD Chado database schema. This layer is implemented with DBIx::Class, generated with the help of DBIx::Class::Schema::Loader module.
Proper citation: Bio-Chado-Schema (RRID:SCR_024059) Copy
Software tool for constructing and visualizing bibliometric networks. These networks may for instance include journals, researchers, or individual publications, and they can be constructed based on citation, bibliographic coupling, co-citation, or co-authorship relations. Offers text mining functionality that can be used to construct and visualize co-occurrence networks of important terms extracted from body of scientific literature.
Proper citation: VOSviewer (RRID:SCR_023516) Copy
Open source Python-based optimization modeling language with diverse set of optimization capabilities.
Proper citation: pyomo (RRID:SCR_024188) Copy
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