Tools   Select Another Resource Report Type

https://www.topazlabs.com/gigapixel-ai

Software to increase image resolution. Gigapixel AI’s neural networks are continuously trained on sample images to increase resolution of different subjects like portraits, wildlife, landscapes, architecture and image types like DSLR, web/compressed, CG.

Proper citation: Gigapixel AI (RRID:SCR_023684) Copy   

•   Source: SciCrunch Registry

https://www.thermofisher.com/de/de/home/digital-science/thermo-fisher-connect.html

Platform for connecting people, software, data, and equipment. Helps integrating software, instruments, and data across your lab’s existing ecosystem. Provides: workflows guide users through processes involving multiple systems;Centralized access to Thermo Fisher Scientific instrument service and expertise;Connectivity to monitor and maintain instruments and equipment;Granular data sharing controls to enhance collaboration;Secure environment.

Proper citation: ThermoFisher Connect Platform (RRID:SCR_023441) Copy   

•   Source: SciCrunch Registry

https://github.com/IBT-FMI/ABI-expression-data_generator

Software to download expression data from Allen Mouse Brain data portal ABI. This script will query database, download available data, convert it from the raw/mhd format to NIfTI, and register it to standard space. Package-manager-friendly archive of gene expression maps registered in SMRI standard space from the Allen Mouse Brain Atlas.

Proper citation: ABI-expression-data-generator (RRID:SCR_023834) Copy   

•   Source: SciCrunch Registry

https://desmid.github.io/mview/

Web-compatible database search or multiple alignment viewer, Software tool as command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats.

Proper citation: MView (RRID:SCR_024129) Copy   

•   Source: SciCrunch Registry

https://www.ebrains.eu/brain-atlases/analysis/gene-expression-analysis-in-human-brain-atlas-regions/

Software tool for integrating tissue transcriptome and cytoarchitectonic segregation. Combines data from Allen Human Brain Atlas and the EBRAINS Human Brain Atlas, specifically to discover how gene activities and microanatomical architectures contribute to brain function and dysfunction. Both tissue transcriptome and probabilistic brain segregation data allow for integrating genetic expression, brain structure, and function knowledge.

Proper citation: JuGEx (RRID:SCR_023838) Copy   

•   Source: SciCrunch Registry

https://pypi.org/project/findmaxima2d/

Software Python 2D Maxima finding algorithm. Re-implementation of Java plugin for ImageJ/Fiji.

Proper citation: findmaxima2d (RRID:SCR_023332) Copy   

•   Source: SciCrunch Registry

https://github.com/petersaj/AP_histology

Software data pipeline which aligns histology images to the Allen CCF.

Proper citation: AP-histology (RRID:SCR_023847) Copy   

•   Source: SciCrunch Registry

http://www.listdiff.com/

Software tool that performs SET Operations including Set Intersections, Set Unions and Set Differences over lists of words, numbers etc with formatted results . Used for comparing differences between two lists.

Proper citation: ListDiff (RRID:SCR_023569) Copy   

•   Source: SciCrunch Registry

http://rambok.sourceforge.net/

Software tool for rapid and sensitive removal of background sequences from Next Generation Sequencing data.

Proper citation: rambo-k (RRID:SCR_024198) Copy   

•   Source: SciCrunch Registry

https://metacpan.org/dist/Bio-Tools-Run-Alignment-TCoffee

Software object for calculation of multiple sequence alignment from set of unaligned sequences or alignments using the TCoffee program.

Proper citation: Bio-Tools-Run-Alignment-TCoffee (RRID:SCR_024070) Copy   

•   Source: SciCrunch Registry

https://www.dtu.ox.ac.uk/homacalculator/

Software tool used to calculate Homeostasis Model Assessment which takes account of variations in hepatic and peripheral glucose resistance, increases in insulin secretion curve for plasma glucose concentrations and contribution of circulating proinsulin. Provides access to HOMA2 model for researchers who wish to use model derived estimates of %B and %S, rather than linear approximations.

Proper citation: HOMA2 calculator (RRID:SCR_023419) Copy   

•   Source: SciCrunch Registry

https://www.vitalimages.com/enterprise-imaging-solution/diagnostic-viewer/

Software application providing tools and features that may be used for general purpose radiological viewing and reading of image data from various imaging modalities, clinical review and performs functions of digital image processing, measurement, communications and storage.

Proper citation: Vitrea Read Diagnostic Viewer (RRID:SCR_023418) Copy   

•   Source: SciCrunch Registry

https://namsor.app/

Software tool accurately classifies personal names by gender, country of origin or ethnicity. Can infer gender, translate Chinese names and Japanese names, format phone number, and split full name via user interface and API. Used as name checker for gender, origin and ethnicity determination.

Proper citation: NamSor (RRID:SCR_023935) Copy   

•   Source: SciCrunch Registry

https://github.com/AstraZeneca-NGS/VarDictJava

Software tool as variant caller for both single and paired sample variant calling from BAM files. Implements amplicon bias aware variant calling from targeted sequencing experiments, rescue of long indels by realigning bwa soft clipped reads.Novel and versatile variant caller for next generation sequencing in cancer research.

Proper citation: VarDict (RRID:SCR_023658) Copy   

•   Source: SciCrunch Registry

https://app.grammarly.com/

Software to correct spelling and grammar.

Proper citation: Grammarly (RRID:SCR_023778) Copy   

•   Source: SciCrunch Registry

https://www.chemcomp.com/Products.htm

Drug discovery platform to integrate visualization, modeling and simulation in single package. Integrated computer aided molecular design platform.

Proper citation: Molecular Operating Environment (RRID:SCR_023932) Copy   

•   Source: SciCrunch Registry

https://chat.openai.com/

Artificial Iinteligence chatbot that uses natural language processing to create humanlike conversational dialogue. Notable for enabling users to refine and steer conversation towards desired length, format, style, level of detail, and language used. Sibling model to InstructGPT, which is trained to follow instruction in prompt and provide detailed response.

Proper citation: ChatGPT (RRID:SCR_023775) Copy   

•   Source: SciCrunch Registry

https://www.beckman.com/liquid-handlers/software/sami-ex#product-table-wrapper

Software tool provides automation and process control across wide variety of applications, creates planned data driven schedules in optimized and predictable scheduling environment.

Proper citation: SAMI Ex (RRID:SCR_023271) Copy   

•   Source: SciCrunch Registry

https://github.com/singleron-RD/CeleScope

Software tool as collection of bioinfomatics analysis pipelines to process single cell sequencing data generated with Singleron products. Single cell analysis pipelines developed by Singleron Biotechnologies.

Proper citation: CeleScope (RRID:SCR_023553) Copy   

•   Source: SciCrunch Registry

https://github.com/lufuhao/mitochondria-simulator

Software repository for mtDNA assembly project.

Proper citation: mitochondria simulator (RRID:SCR_023430) Copy   

•   Source: SciCrunch Registry