Tools   Select Another Resource Report Type

https://app.grammarly.com/

Software to correct spelling and grammar.

Proper citation: Grammarly (RRID:SCR_023778) Copy   

•   Source: SciCrunch Registry

https://www.chemcomp.com/Products.htm

Drug discovery platform to integrate visualization, modeling and simulation in single package. Integrated computer aided molecular design platform.

Proper citation: Molecular Operating Environment (RRID:SCR_023932) Copy   

•   Source: SciCrunch Registry

https://chat.openai.com/

Artificial Iinteligence chatbot that uses natural language processing to create humanlike conversational dialogue. Notable for enabling users to refine and steer conversation towards desired length, format, style, level of detail, and language used. Sibling model to InstructGPT, which is trained to follow instruction in prompt and provide detailed response.

Proper citation: ChatGPT (RRID:SCR_023775) Copy   

•   Source: SciCrunch Registry

https://www.beckman.com/liquid-handlers/software/sami-ex#product-table-wrapper

Software tool provides automation and process control across wide variety of applications, creates planned data driven schedules in optimized and predictable scheduling environment.

Proper citation: SAMI Ex (RRID:SCR_023271) Copy   

•   Source: SciCrunch Registry

https://github.com/singleron-RD/CeleScope

Software tool as collection of bioinfomatics analysis pipelines to process single cell sequencing data generated with Singleron products. Single cell analysis pipelines developed by Singleron Biotechnologies.

Proper citation: CeleScope (RRID:SCR_023553) Copy   

•   Source: SciCrunch Registry

https://github.com/lufuhao/mitochondria-simulator

Software repository for mtDNA assembly project.

Proper citation: mitochondria simulator (RRID:SCR_023430) Copy   

•   Source: SciCrunch Registry

https://www.beckman.com/liquid-handlers/software/dart

Software package that gathers data and synthesizes runtime information from Biomek log files to capture each manipulation of sample during course of method.

Proper citation: Data Acquisition and Reporting Tool (RRID:SCR_023272) Copy   

•   Source: SciCrunch Registry

https://github.com/lufuhao/repfinder

Software tool to find shared repeats between mitochondrial genomes.

Proper citation: RepFinder (RRID:SCR_023429) Copy   

•   Source: SciCrunch Registry

https://github.com/mgharvey/misc_python/blob/master/bin/TreeMix/treemix_tree_with_bootstraps.py

Phython script for bootstraping Treemix snp trees to generate confidance intervals in the main tree.

Proper citation: treemix_tree_with_bootstraps.py (RRID:SCR_023426) Copy   

•   Source: SciCrunch Registry

https://github.com/churchmanlab/genewalk

Software for individual genes functions determination that are relevant in particular biological context and experimental condition. Quantifies similarity between vector representations of gene and annotated GO terms through representation learning with random walks on condition specific gene regulatory network. Similarity significance is determined through comparison with node similarities from randomized networks.

Proper citation: GeneWalk (RRID:SCR_023787) Copy   

•   Source: SciCrunch Registry

https://github.com/miRTop/mirtop

Command lines tool to annotate miRNAs with standard mirna/isomir naming.

Proper citation: mirtop (RRID:SCR_024116) Copy   

•   Source: SciCrunch Registry

https://sourceforge.net/projects/mpsqed/

Software tool for the design of multiplex pyrosequencing assays.

Proper citation: mPSQed (RRID:SCR_024118) Copy   

•   Source: SciCrunch Registry

http://www-igm.univ-mlv.fr/~marsan/smile_english.html

Software tool that infers motifs in set of sequences to infer exceptionnal sites as binding sites in DNA sequences. 1.4 version allows to infer motifs written on any alphabet in any kind of sequences. Allows to deal with motifs associated by some distance constraints. Used to group under unique model different occurrences composed of several boxes separated by spacers of different lengths.

Proper citation: SMILE (RRID:SCR_024119) Copy   

•   Source: SciCrunch Registry

https://github.com/biod/sambamba

Software tool to filter SAM file for soft and hard clipped alignments

Proper citation: samclip (RRID:SCR_024330) Copy   

•   Source: SciCrunch Registry

https://github.com/ekg/seqwish

Software tool for alignment to variation graph inducer.

Proper citation: seqwish (RRID:SCR_024332) Copy   

•   Source: SciCrunch Registry

http://www.hunter.cuny.edu/chemistry/facilities/nmr/home

A service facility with four main spectrometers. The facility consists of four NMR instruments: a JEOL GX-400, a Varian Inova 500, a Bruker Avance 500 equipped with a 13C-1H cryoprobe, and a Bruker Avance III 600 MHz spectrometer equipped with a cryoprobe. These spectrometers are utilized by scientists from Hunter College, as well as from the entire CUNY community. The large variety of available probes allows detection of virtually any MR-active nuclide. Data analysis is performed either at the spectrometer workstation with vendor software or off-line with third party software packages.

Proper citation: Hunter NMR Spectroscopy Facility (RRID:SCR_000883) Copy   

•   Source: SciCrunch Registry

http://technelysium.com.au/?page_id=13

Software ideal for the most basic of sequencing projects, where assembly of multiple sequences is not required., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: Chromas (RRID:SCR_000598) Copy   

•   Source: SciCrunch Registry

http://famu.eagle-i.net/i/00000137-5195-0786-f0f1-ede280000000

A laboratory equipped with laser-based flow cytometric instruments, the main one being the Becton Dickinson two-laser FACScalibur analyzer. This facility provides a resource for analytical and preparative studies of cells using flow cytometry to the FAMU biomedical researchers. This facility offers FACS acquisition and analysis for detecting cell surface or intracellular proteins, measuring apoptosis, cell cycle, cellular physiology that have both biomedical and clinical applications.

Proper citation: FAMU Flow cytometry laboratory (RRID:SCR_000877) Copy   

•   Source: SciCrunch Registry

https://github.com/cbrnr/sigviewer

Software viewing application for biosignals such as EEG or MEG time series. In addition to viewing raw data, SigViewer can also create, edit, and display event information such as annotations or artifact selections.

Proper citation: sigviewer (RRID:SCR_024340) Copy   

•   Source: SciCrunch Registry

http://sitplus.crea-si.com/index/index.html

Software framework to provide ludic-therapeutic activities for people with disabilities.Offers new forms of interaction based on computer vision, voice and other peripherals to produce result in form of image and sound. Used for continuous and remote interaction, attainable to majority of people with cognitive, sensory and physical disabilities.

Proper citation: sitplus (RRID:SCR_024344) Copy   

•   Source: SciCrunch Registry