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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Data Acquisition and Reporting Tool Resource Report Resource Website |
Data Acquisition and Reporting Tool (RRID:SCR_023272) | DART | software resource, software application | Software package that gathers data and synthesizes runtime information from Biomek log files to capture each manipulation of sample during course of method. | Beckman Coulter, Life Sciences, Biomek log files, capture each sample manipulation, gathers data and synthesizes runtime information, | Restricted | SCR_023272 | 2026-08-12 10:53:00 | 0 | ||||||||||
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RepFinder Resource Report Resource Website |
RepFinder (RRID:SCR_023429) | software resource, software application | Software tool to find shared repeats between mitochondrial genomes. | mitochondrion, mtDNA, find shared repeats, mitochondrial genomes, | Free, Available for download, Freely available | SCR_023429 | 2026-08-12 10:52:54 | 0 | |||||||||||
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treemix_tree_with_bootstraps.py Resource Report Resource Website 1+ mentions |
treemix_tree_with_bootstraps.py (RRID:SCR_023426) | software resource, software application | Phython script for bootstraping Treemix snp trees to generate confidance intervals in the main tree. | Phython script, bootstraping Treemix snp trees, generate confidance intervals, main tree, | Free, Available for download, Freely available | SCR_023426 | 2026-08-12 10:53:02 | 1 | |||||||||||
|
GeneWalk Resource Report Resource Website 1+ mentions |
GeneWalk (RRID:SCR_023787) | software resource, software application | Software for individual genes functions determination that are relevant in particular biological context and experimental condition. Quantifies similarity between vector representations of gene and annotated GO terms through representation learning with random walks on condition specific gene regulatory network. Similarity significance is determined through comparison with node similarities from randomized networks. | genes functions determination, vector representations of gene, annotated GO terms, similarity significance, node similarities, randomized networks, | NHGRI R01 HG007173 | PMID:33526072 | Free, Available for download, Freely available | https://churchman.med.harvard.edu/genewalk | SCR_023787 | 2026-08-12 10:52:58 | 4 | ||||||||
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mirtop Resource Report Resource Website 1+ mentions |
mirtop (RRID:SCR_024116) | software resource, software application | Command lines tool to annotate miRNAs with standard mirna/isomir naming. | annotate miRNAs, standard mirna/isomir naming, | is listed by: Debian | DOI:10.7490/f1000research.1115724.1 | Free, Available for download, Freely available, | OMICS_31718 | https://sources.debian.org/src/mirtop/, https://mirtop.readthedocs.io/en/latest/ | SCR_024116 | 2026-08-12 10:53:03 | 1 | |||||||
|
mPSQed Resource Report Resource Website |
mPSQed (RRID:SCR_024118) | software resource, software application | Software tool for the design of multiplex pyrosequencing assays. | design of multiplex pyrosequencing assays, | is listed by: Debian | PMID:22675516 | Free, Available for download, Freely available, | OMICS_33146 | https://sources.debian.org/src/mpsqed/ | SCR_024118 | mpsqed | 2026-08-12 10:53:10 | 0 | ||||||
|
SMILE Resource Report Resource Website 1+ mentions |
SMILE (RRID:SCR_024119) | software resource, software application | Software tool that infers motifs in set of sequences to infer exceptionnal sites as binding sites in DNA sequences. 1.4 version allows to infer motifs written on any alphabet in any kind of sequences. Allows to deal with motifs associated by some distance constraints. Used to group under unique model different occurrences composed of several boxes separated by spacers of different lengths. | infers motifs in set of sequences, binding sites in DNA sequences, distance constraints, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_20188 | https://sources.debian.org/src/mlv-smile/ | SCR_024119 | mlv-smile | 2026-08-12 10:53:03 | 1 | |||||||
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samclip Resource Report Resource Website 1+ mentions |
samclip (RRID:SCR_024330) | software resource, software application | Software tool to filter SAM file for soft and hard clipped alignments | filter SAM file, soft and hard clipped alignments, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/samclip/ | SCR_024330 | 2026-08-12 10:53:02 | 2 | |||||||||
|
seqwish Resource Report Resource Website 1+ mentions |
seqwish (RRID:SCR_024332) | software resource, software application | Software tool for alignment to variation graph inducer. | alignment, variation graph inducer, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/seqwish/ | SCR_024332 | 2026-08-12 10:53:06 | 2 | |||||||||
|
Hunter NMR Spectroscopy Facility Resource Report Resource Website |
Hunter NMR Spectroscopy Facility (RRID:SCR_000883) | material resource, instrument supplier | A service facility with four main spectrometers. The facility consists of four NMR instruments: a JEOL GX-400, a Varian Inova 500, a Bruker Avance 500 equipped with a 13C-1H cryoprobe, and a Bruker Avance III 600 MHz spectrometer equipped with a cryoprobe. These spectrometers are utilized by scientists from Hunter College, as well as from the entire CUNY community. The large variety of available probes allows detection of virtually any MR-active nuclide. Data analysis is performed either at the spectrometer workstation with vendor software or off-line with third party software packages. | spectrometer, spectroscopy, analysis, cuny, nuclide, data analysis |
is listed by: Eagle I has parent organization: Hunter College; New York; USA |
nlx_156342 | http://hunter-cuny.eagle-i.net/i/00000136-79a2-306f-949b-425080000000 | SCR_000883 | 2026-08-12 10:48:18 | 0 | |||||||||
|
Chromas Resource Report Resource Website 10+ mentions |
Chromas (RRID:SCR_000598) | Chromas | commercial organization, software resource | Software ideal for the most basic of sequencing projects, where assembly of multiple sequences is not required., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | sequencing, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01016, biotools:chromas | https://bio.tools/chromas | SCR_000598 | 2026-08-12 10:48:15 | 16 | |||||||
|
FAMU Flow cytometry laboratory Resource Report Resource Website |
FAMU Flow cytometry laboratory (RRID:SCR_000877) | material resource, instrument supplier | A laboratory equipped with laser-based flow cytometric instruments, the main one being the Becton Dickinson two-laser FACScalibur analyzer. This facility provides a resource for analytical and preparative studies of cells using flow cytometry to the FAMU biomedical researchers. This facility offers FACS acquisition and analysis for detecting cell surface or intracellular proteins, measuring apoptosis, cell cycle, cellular physiology that have both biomedical and clinical applications. |
is listed by: Eagle I has parent organization: Florida Agricultural and Mechanical University; Florida; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156248 | http://www.pharmacy.famu.edu/rcmi/bluepill.php?sect=includes/core-facilities/flow-cytometry-facility | SCR_000877 | Flow Cytometry facility at Florida A&M University | 2026-08-12 10:48:18 | 0 | ||||||||
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sigviewer Resource Report Resource Website |
sigviewer (RRID:SCR_024340) | software resource, software application | Software viewing application for biosignals such as EEG or MEG time series. In addition to viewing raw data, SigViewer can also create, edit, and display event information such as annotations or artifact selections. | viewing application for biosignals, EEG, MEG, time series, viewing raw data, create event information, edit event information, display event information, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/sigviewer/ | SCR_024340 | 2026-08-12 10:53:06 | 0 | |||||||||
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sitplus Resource Report Resource Website |
sitplus (RRID:SCR_024344) | software resource, software application | Software framework to provide ludic-therapeutic activities for people with disabilities.Offers new forms of interaction based on computer vision, voice and other peripherals to produce result in form of image and sound. Used for continuous and remote interaction, attainable to majority of people with cognitive, sensory and physical disabilities. | interaction based on computer vision, voice, produce result in form of image and sound, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/sitplus/ | SCR_024344 | SITPLUS | 2026-08-12 10:53:06 | 0 | ||||||||
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Artinis Medical Systems Oxysoft Resource Report Resource Website 1+ mentions |
Artinis Medical Systems Oxysoft (RRID:SCR_024666) | software resource, software application | Software application used to collect, store, view, and analyse all necessary data from the Brite Family devices, PortaMon, PortaLite, OctaMon and OxyMon developed by Artinis Medical Systems and highly customisable to individual requirements. | Artinis Medical Systemscollect, store, view, analyse, Brite Family, PortaMon, PortaLite, OxyMon, devices data, | Restricted | SCR_024666 | 2026-08-12 10:53:11 | 3 | |||||||||||
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Core Life Sciences Resource Report Resource Website |
Core Life Sciences (RRID:SCR_000138) | material resource, instrument supplier | A commercial organization that supplies researchers with life science instruments, reagents and consumables, and lab services. | commercial, lab procedures, affymetrix DNA microarray, microRNA, methylation analysis, peptide microarray, quantitative PCR, reagent supplier, instrument supplier | is listed by: ScienceExchange | Public, Commercial, Institutional pricing is available | SciEx_10652 | http://www.scienceexchange.com/facilities/core-life-sciences-inc | SCR_000138 | Core Life Sciences Inc. | 2026-08-12 10:48:10 | 0 | |||||||
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Tecan i-Control Resource Report Resource Website 1+ mentions |
Tecan i-Control (RRID:SCR_024562) | software resource, software application | Microplate reader software as user friendly interface for control of Tecan's Infinite series of microplate readers designed for professional use. | Tecan, Infinite plate reader family system software, | Restricted | https://bif.wisc.edu/wp-content/uploads/sites/389/2017/11/i-control_Manual.pdf | SCR_024562 | i-Control, Tecan i-Control software | 2026-08-12 10:53:15 | 5 | |||||||||
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CPODES numerical integrator Resource Report Resource Website 1+ mentions |
CPODES numerical integrator (RRID:SCR_000766) | CPODES | software resource, source code | CPODES is a numerical integrator for solving multibody dynamics problems using coordinate projection. It is based on the CVODES integrator which is part of the DOE Sundials suite. It is a multistep integrator providing variable order Adams (up to 12th order) and BDF (up to 5th order) methods for non-stiff problems and BDF (up to 5th order) for stiff problems. It uses CVODES to advance the ODE, and then performs coordinate projection back to the constraint manifold to exactly solve the DAE. The projection is also incorporated back into the error test where it permits larger steps. Binaries of this software are bundled with other SimTK Core modules. | dynamic, numerical integrator, multibody, source code |
uses: Simbody(tm): SimTK Multibody Dynamics Toolset is listed by: Simtk.org |
Free, Available for download, Freely available | nif-0000-23329 | SCR_000766 | 2026-08-12 10:48:16 | 6 | ||||||||
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JSU Environmental Toxicology Core Lab Resource Report Resource Website |
JSU Environmental Toxicology Core Lab (RRID:SCR_000884) | material resource, instrument supplier | A research laboratory and facility which supports research on environmental toxicology at Jackson State University. | environment, toxic, toxicology, equipment, instrument, technology |
is listed by: Eagle I has parent organization: Jackson State University; Mississippi; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156361 | SCR_000884 | Jackson State University Environmental Toxicology Lab | 2026-08-12 10:48:18 | 0 | ||||||||
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StereoCell v2.0 Resource Report Resource Website 1+ mentions |
StereoCell v2.0 (RRID:SCR_024438) | software resource, software application | Enhanced application on generating single cell gene expression profile for high resolution spatial transcriptomics. Registers spatial gene expression map and cell membrane/wall staining image with nuclei staining image as intermediary, thus cell membrane/wall outlines can be directly segmented from cell membrane/wall staining image without correcting nuclei boundaries. | Register spatial gene expression map, register image, generating single cell gene expression profile, high resolution spatial transcriptomics, | Free, Available for download, Freely available | SCR_024438 | StereoCell | 2026-08-12 10:53:08 | 1 |
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