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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Proteomics Core Resource Report Resource Website |
Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Proteomics Core (RRID:SCR_015597) | access service resource, core facility, service resource | Core facility that uses mass spectrometry coupled to one (1D) and two (2D) dimensional separations by column chromatography or gel electrophoresis to identify, quantify or characterize proteins and their post-translational modifications, that are expressed in well characterized protein fractions from the small intestine, colon, kidney, liver and pancreas. Techniques such as difference gel electrophoresis (DIGE), isobaric tag for relative and absolute quantitation (iTRAQ), tandem mass tags (TMT) and stable isotope labeling of amino acids in cell culture (SILAC) as well as non-labeling methods (MudPIT, multi-dimensional protein identification technology) are available for quantifying relative differences in protein expression and post-translational modifications, such as acetylation, glycosylation, phosphorylation, nitrosation, ubiquitination and novel cleavage sites. | proteomics, mass spectrometry, digestive disease, protein, HDDBTRCC |
is listed by: NIDDK Information Network (dkNET) has parent organization: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center is organization facet of: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center |
digestive disease | NIDDK P30 DK089502 | Available to affiliated researchers, Available to John Hopkins University | SCR_015597 | 2026-08-04 09:43:41 | 0 | ||||||||
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University of Alabama at Birmingham Nutrition and Obesity Research Center Physical Activity Core Resource Report Resource Website |
University of Alabama at Birmingham Nutrition and Obesity Research Center Physical Activity Core (RRID:SCR_015474) | resource, access service resource, core facility, service resource | Core that provides physical activity services and consultation for UAB investigators. Services include aerobic fitness tests, supervised resistance training, submaximal ease/economy locomotion tests, and strength and functional tests, with respective measurements taken. | physical activity service, physical activity testing |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Alabama at Birmingham; Alabama; USA has parent organization: University of Alabama at Birmingham Nutrition and Obesity Research Center is organization facet of: University of Alabama at Birmingham Nutrition and Obesity Research Center |
Obesity | NIDDK P30DK056336 | Available to the UAB community | SCR_015474 | 2026-08-04 09:43:39 | 0 | ||||||||
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O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston Rodent Urinary Function Testing Core Resource Report Resource Website |
O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston Rodent Urinary Function Testing Core (RRID:SCR_015477) | resource, access service resource, core facility, service resource | Core that designs, validates, and disseminates protocols for rodent urinary function testing. It also provides urinary function testing services, expertise, laboratory space, vivarium, and equipment for complete mouse urinary function testing. | rodent model, urinary function testing, vivarium, mouse urinary function |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Wisconsin-Madison; Wisconsin; USA has parent organization: University of Massachusetts Boston; Massachusetts; USA has parent organization: O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston is organization facet of: O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston |
NIDDK U54DK104310 | Available to the research community, Fee for service, Free for the O?Brien Center community | SCR_015477 | 2026-08-04 09:43:39 | 0 | |||||||||
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Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Image Core Resource Report Resource Website |
Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Image Core (RRID:SCR_015593) | access service resource, core facility, service resource | Core facility that provides state-of-art light microscopy technology to the members of the Hopkins Basic Research Digestive Disease Development Center and to the whole Hopkins scientific community. | microscope, microscopy, digestive disease |
is listed by: NIDDK Information Network (dkNET) has parent organization: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center is organization facet of: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center |
digestive disease | NIDDK P30 DK089502 | Available to affiliated researchers, Available to John Hopkins University | SCR_015593 | 2026-08-04 09:43:42 | 0 | ||||||||
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Harvard Digestive Diseases Center Bio-Repository and Data Registry for Human Material Resource Report Resource Website |
Harvard Digestive Diseases Center Bio-Repository and Data Registry for Human Material (RRID:SCR_015590) | access service resource, core facility, service resource | Core facility that supports basic, translational, and clinical research in the digestive diseases by providing access to human materials and resources in statistics and study design. It also aims to to forge connections and support collaboration between HDDC Clinical Associates and Members, support a well-organized infrastructure for acquisition and storage of clinical samples, and provide professional support in biostatistics and study design to HDDC members and Clinical Associates. | digestive disease, clinical care, metadata, biostatistics, collaboration, clinical sample |
is listed by: NIDDK Information Network (dkNET) has parent organization: Harvard Digestive Disease Center is organization facet of: Harvard Digestive Disease Center |
digestive disease | NIDDK P30 DK034854 | Available to the research community, Available to affiliated researchers, Available to HDDC Clinical Associates and Members | SCR_015590 | 2026-08-04 09:43:42 | 0 | ||||||||
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Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Integrated Physiology Core Resource Report Resource Website |
Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Integrated Physiology Core (RRID:SCR_015591) | access service resource, core facility, service resource | Core facility that provides Center investigators and their laboratories the tools and advice needed to establish and study mouse (including transgenic and knockout) and human (i.e. GI organoids) physiology of GI disease. | gi tract, gi disease, gi oranoids, mouse study, digestive disease |
is listed by: NIDDK Information Network (dkNET) has parent organization: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center is organization facet of: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center |
digestive disease | NIDDK P30 DK089502 | Available to affiliated researchers, Available to John Hopkins University, Available to members of the Hopkins Basic Research Digestive Disease Development Center | SCR_015591 | 2026-08-04 09:43:41 | 0 | ||||||||
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University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core Resource Report Resource Website |
University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core (RRID:SCR_015609) | access service resource, core facility, service resource | Core facility whose services include the following programs: Imaging Core Program, Proteomics Core Program, Protein Folding Core Program, and Consultation. | protein localization, imaging, proteomics, protein folding, protein identification |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Michigan Center for Gastrointestinal Research is organization facet of: University of Michigan Center for Gastrointestinal Research |
digestive disease | NIDDK P30 DK034933 | Available to affiliated researchers | SCR_015609 | 2026-08-04 09:43:42 | 0 | ||||||||
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University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core Resource Report Resource Website |
University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core (RRID:SCR_015611) | UMCGR, MMC, | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 8,2025. Core whose services include consultation, Nucleic Acid Isolation, Microbiome (16S) Data Analysis, MiSeq-base 16S rRNA Gene Sequencing, Genomic/Metagenomic shotgun sequencing, Bacterial transcriptomics and metatranscriptomics, Multiplatform Metabolomic Profiling, Metabolomic sample preparation, and Germ-free & Gnotobiotic Mouse Facilities. | microbiome, metabolomics, bioinformatics, |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Michigan Center for Gastrointestinal Research is organization facet of: University of Michigan Center for Gastrointestinal Research |
digestive disease | NIDDK P30 DK034933 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015611 | Center for Gastrointestinal Research, University of Michigan, Metabolomics Core, Microbiome | 2026-08-04 09:43:42 | 0 | ||||||
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University of Colorado Anschutz Medical Campus Nutrition and Obesity Research Center Energy Balance Assessment Core Facility Resource Report Resource Website |
University of Colorado Anschutz Medical Campus Nutrition and Obesity Research Center Energy Balance Assessment Core Facility (RRID:SCR_015914) | EBAC | access service resource, core facility, service resource | Core facility for University of Colorado Anschutz Medical Campus Nutrition and Obesity Research Center. Provides support for measurement of components of energy balance and for assessing consequences of alterations in energy balance. Provides expertise and support for obesity and nutrition related basic, clinical, translational, and transdisciplinary research for NORC investigators and its affiliates. Provides services to assess body composition, bone density, physical fitness, and energy expenditure values in research participants. | Energy balance, obesity, research, energy, balance, assessment | is organization facet of: University of Colorado Anschutz Medical Campus Nutrition and Obesity Research Center | NIDDK P30 DK 48520 | SCR_015924 | https://anschutzwellness.com/ | SCR_015914 | Energy Balance Core | 2026-08-04 09:43:46 | 0 | ||||||
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Stanford Diabetes Research Center Diabetes Genomics Analysis Core Resource Report Resource Website 1+ mentions |
Stanford Diabetes Research Center Diabetes Genomics Analysis Core (RRID:SCR_016213) | GDAC, SDRC-GDAC, SDRC | access service resource, core facility, service resource | Core facility that offers library preparation and sequencing services on a variety of platforms - Illumina HiSeq 4000, MiSeq, HiSeq 2500 and PacBio Sequel - as well as bioinformatics analysis. It can sequence a variety of commercial sample preparation kits as well as custom workflows. DGAC provides access to high throughput sequencing and analysis to researchers at the Stanford Diabetes Research Center. | library, sequence, workflow, bioinformatic, gene, analysis, sequencing |
is related to: Stanford Diabetes Research Center Diabetes Immune Monitoring Core is related to: Stanford Diabetes Research Center Stanford Islet Research Core is related to: Stanford Diabetes Research Center Diabetes Clinical and Translational Core has parent organization: Stanford University; Stanford; California is organization facet of: Stanford Diabetes Research Center |
NIDDK P30 DK116074 | Available to external user | SCR_016213 | SDRC, Genomics Analysis Core, Diabetes Genomics Analysis Core | 2026-08-04 09:43:50 | 1 | |||||||
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University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Research Facilitation Program Resource Report Resource Website |
University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Research Facilitation Program (RRID:SCR_015480) | NORC, UNC NORC, UNC Nutrition and Obesity Research Center, Nutrition and Obesity Research Center | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 23,2019. Center that provides bioinformatics and metabolomics support to UNC members for nutrition and obesity-related clinical and translational research. | bioinformatics, metabolomics, obesity research, nutrition research, translational obesity research |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA has parent organization: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center is organization facet of: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center |
Obesity | NIDDK DK056350 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015480 | , UNC, NORC, Nutrition and Obesity Research Center | 2026-08-04 09:43:40 | 0 | ||||||
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eXpression2Kinases Resource Report Resource Website 1+ mentions |
eXpression2Kinases (RRID:SCR_016307) | X2K | software application, software resource | Software tool to produce inferred networks of transcription factors, proteins, and kinases predicted to regulate the expression of the inputted gene list by combining transcription factor enrichment analysis, protein-protein interaction network expansion, with kinase enrichment analysis. It provides the results as tables and interactive vector graphic figures. | inferred, network, transcription, factor, protein, kinase, regulate, expression, gene, analysis, combine, bio.tools |
is listed by: Debian is listed by: bio.tools |
NIGMS P50 GM071558; NIDDK R01 DK088541; NLM RC2 LM010994; NIDDK P01 DK056492; NIDDK RC4DK090860; NCRR KL2 RR029885 |
PMID:22080467 | Open source, Free, Freely available, Available for download | biotools:x2k | https://bio.tools/x2k, http://www.maayanlab.net/X2K/ | SCR_016307 | eXpression2Kinases, X2K | 2026-08-04 09:43:52 | 4 | ||||
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Louisiana State University Pennington Biomedical Research Center Genomics Core Facility Resource Report Resource Website |
Louisiana State University Pennington Biomedical Research Center Genomics Core Facility (RRID:SCR_018675) | GCF | access service resource, core facility, service resource | Provides services which include Sanger and next-generation DNA sequencing,DNA fragment analysis,qualitative and quantitative analysis of DNA, protein, and RNA samples, quantitative PCR, microarray RNA labeling, hybridization, and scanning robotics,bioinformatics.Individual and small group training and consultation services are offered for sequence analysis, real-time PCR, next-generation sequencing and microarray analysis. | USEDit, Sanger sequencing, next generation DNA sequencing, DNA fragment analysis, quality, quantity, analysis, DNA, protein, RAN, qPCR, microarray RNA labeling, hybridization, scanning robotics, training, ABRF | is listed by: ABRF CoreMarketplace | NIGMS 1P30GM118430; NIDDK 2P30DK072476 |
Open | ABRF_434 | https://coremarketplace.org/?FacilityID=434 | SCR_018675 | Pennington Genomics Core, Pennington Biomedical Research Center Genomics Core | 2026-08-04 09:44:22 | 0 | |||||
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University of Massachusetts Medical School Metabolic Disease Research Center Core Facility Resource Report Resource Website 1+ mentions |
University of Massachusetts Medical School Metabolic Disease Research Center Core Facility (RRID:SCR_018672) | MMPC, UMass MMPC, MDRC | access service resource, core facility, service resource | UMass Metabolic Disease Research Center (MDRC), formerly the National Mouse Metabolic Phenotyping Center, is a core facility that performs standardized experiments using state-of-the-art equipment for the purpose of investigating transgenic mouse models of diabetes, obesity, and metabolic liver disease. Provides metabolic and functional characterization of mouse models of human diseases that are developed by academic and industry researchers in joint efforts to understand metabolic diseases and to identify new therapies. | UMass Chan Medical School, mouse model, human disease, diabetes, obesity, diabetic complication, phenotyping, metabolism, analysis, islet, cardiovascular, microbiome, humanized mouse cell transplantation, assessment, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Massachusetts Medical School; Massachusetts; USA |
NIDDK U2C DK093000 | Open | SCR_015366, ABRF_390 | https://coremarketplace.org/?FacilityID=390 | SCR_018672 | Massachusetts University Medical School Mouse Phenotyping Center Core Facility, UMass Medical School Metabolic Disease Research Center, National Mouse Metabolic Phenotyping Center, University of Massachusetts Medical School Mouse Phenotyping Center Core Facility, Massachusetts University Medical School National Mouse Metabolic Phenotyping Center | 2026-08-04 09:44:22 | 1 | |||||
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University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core Resource Report Resource Website |
University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core (RRID:SCR_015608) | biomaterial supply resource, material resource, tissue bank | Core facility that consists of the following 4 distinct programs: In Vivo Small Animal Studies Program, Organoid/Enteroid Modeling Program, Biospecimens Banking Service, and Clinical Design and Statistics. | in vivo, animal and human studies, gastrointestinal research |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Michigan Center for Gastrointestinal Research is organization facet of: University of Michigan Center for Gastrointestinal Research |
digestive disease | NIDDK P30 DK034933 | Available to affiliated researchers | SCR_015608 | 2026-08-04 09:43:42 | 0 | ||||||||
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GATACA GUDMAP Gene Explorer Resource Report Resource Website |
GATACA GUDMAP Gene Explorer (RRID:SCR_014518) | database, data or information resource | A database which can be used to search for genes critical for a variety of Genito-Urinary system functions and diseases. | genito-urinary system, genes, genetic diseases |
uses: GUDMAP Ontology is listed by: NIDDK Information Network (dkNET) has parent organization: GenitoUrinary Development Molecular Anatomy Project |
NIDDK | Freely available | SCR_014518 | 2026-08-04 09:43:27 | 0 | |||||||||
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University of Chicago Digestive Diseases Research Core Center Tissue and Cell Imaging Core Resource Report Resource Website |
University of Chicago Digestive Diseases Research Core Center Tissue and Cell Imaging Core (RRID:SCR_015607) | biomaterial supply resource, material resource, tissue bank | Core whose services include anatomic pathology review of human and experimental animal tissues as well as consultation in the best approaches for such analyses, cost-effective and high quality processing and staining of formalin-fixed paraffin-embedded tissues, and making collections of human tissue and imaging technologies available to researchers. | tissue and cell imaging, gastrointestinal pathology, imaging technology, anatomic pathology |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Chicago Digestive Diseases Research Core Center is organization facet of: University of Chicago Digestive Diseases Research Core Center |
digestive disease | NIDDK P30 DK042086 | Available to the research community, Available to affiliated researchers, Available to DDRCC researchers | SCR_015607 | 2026-08-04 09:43:41 | 0 | ||||||||
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HIRN Human Pancreas Analysis Program Resource Report Resource Website 100+ mentions |
HIRN Human Pancreas Analysis Program (RRID:SCR_016202) | HIRN-HPAP, HPAP | database, data or information resource | Program is performing deep phenotyping of human endocrine pancreas and its interaction with immune system to better understand cellular and molecular events that precede and lead to beta cell loss in Type-1 Diabetes (T1D) and islet dysfunction in Type-2 Diabetes (T2D). | pancreas, endocrinology, immunology, molecular, biology, human, t1d, beta, cell |
has parent organization: HIRN Human Pancreas Analysis Consortium is organization facet of: Human Islet Research Network (HIRN) |
Type 1 diabetes, Diabetes | NIDDK ; NIDDK U01 DK104162; NIDDK UC4 DK112217; NIDDK UC4 DK112232 |
PMID:31127054 | https://hirnetwork.org/consortium/hpap | SCR_016202 | Human Pancreas Analysis Program (HIRN-HPAP), PANC-DB | 2026-08-04 09:43:51 | 120 | |||||
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MitoCarta Resource Report Resource Website 100+ mentions |
MitoCarta (RRID:SCR_018165) | database, data or information resource | Collection of genes encoding proteins with strong support of mitochondrial localization. Inventory of genes encoding mitochondrial-localized proteins and their expression across 14 mouse tissues. Database is based on human and mouse RefSeq proteins that are mapped to NCBI Gene loci. MitoCarta 2.0 inventory provides molecular framework for system-level analysis of mammalian mitochondria. | Gene, protein, mitochondrial protein, protein expression, data, human, mouse, RefSeq protein, analysis, mammalian mitochondra, FASEB list | NIGMS GM0077465; NIDDK DK43351; NIDDK DK57521; Australian NHMRC ; Burroughs Wellcome Fund Career Award in the Biomedical Sciences ; Howard Hughes Medical Institute ; Charles E. Culpeper Scholarship in Medical Science |
PMID:26450961 PMID:18614015 |
Free, Freely available | SCR_018165 | MitoCarta2.0 | 2026-08-04 09:44:20 | 183 | ||||||||
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Signaling Pathways Project Resource Report Resource Website 10+ mentions |
Signaling Pathways Project (RRID:SCR_018412) | SPP | database, data or information resource | Web multi omics knowledgebase based upon public, manually curated transcriptomic and cistromic datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Integrated omics knowledgebase for mammalian cellular signaling pathways. Web browser interface was designed to accommodate numerous routine data mining strategies. Datasets are biocurated versions of publically archived datasets and are formatted according to recommendations of the FORCE11 Joint Declaration on Data Citation Principles73, and are made available under Creative Commons CC 3.0 BY license. Original datasets are available. | Data integration, genetic database, gene regulatory network, cell signalling, cellular signalling network, transcriptomic data, manualy curated, cistromic data, cellular receptor, enzyme, transcrptomic factor, mammalian cellular signaling pathway, data mining strategy, dataset, , bio.tools |
is used by: Hypothesis Center is listed by: Debian is listed by: bio.tools works with: Gene Expression Omnibus (GEO) works with: NCBI Sequence Read Archive (SRA) |
NIDDK DK097771; NIDDK DK097748; NIDDK DK48807; NIDDK DK107535; NIDDK DK56338; NIDDK DK095686; NIDDK DK105126; NCI CA125123; NHLBI HL127624; Dan L. Duncan NCI Comprehensive Cancer Center at Baylor College of Medicine ; CPRIT RP150578 |
PMID:31672983 | Free, Freely available | r3d100013650, biotools:Signaling_Pathways_Project | https://bio.tools/Signaling_Pathways_Project, https://doi.org/10.17616/R31NJN0Y | https://www.signalingpathways.org | SCR_018412 | 2026-08-04 09:44:20 | 30 |
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