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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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AutoPVS Resource Report Resource Website |
AutoPVS (RRID:SCR_026108) | software resource, software application | Software automatic classification tool for PVS1 interpretation of null variants. | automatic classification, PVS1 interpretation, null variants, | PMID:32442321 | Free, Available for download, Freely available | https://github.com/JiguangPeng/autopvs1 | SCR_026108 | , Automatic PVS1 interpretation, AutoPVS1 | 2026-08-12 10:53:28 | 0 | ||||||||
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aactr Resource Report Resource Website 1+ mentions |
aactr (RRID:SCR_026245) | software resource, source code | Software R client for the Aggregate Content of ClinicalTrials.gov (AACT) database API. | R client, Aggregate Content of ClinicalTrials.gov, database API, | Free, Available for download, Freely available | SCR_026245 | 2026-08-12 10:53:30 | 1 | |||||||||||
|
VirtualDub Resource Report Resource Website 10+ mentions |
VirtualDub (RRID:SCR_026123) | software resource, software application | Open-source software for video capture and video processing for Microsoft Windows. Designed to process linear video streams, including filtering and recompression. It uses AVI container format to store captured video. Video capture/processing utility for 32-bit and 64-bit Windows platforms. Used for processing AVI files, although it can read (not write) MPEG-1 and also handle sets of BMP images. | video capture, video processing, process linear video streams, filtering, recompression, processing AVI files, | Free, Available for download, Freely available | https://sourceforge.net/projects/virtualdub/files/ | SCR_026123 | 2026-08-12 10:53:29 | 19 | ||||||||||
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Alfa Cytology Resource Report Resource Website |
Alfa Cytology (RRID:SCR_026128) | commercial organization, service resource | Biotechnology company specialized in innovative solutions for cancer research. Provides Cancer Modeling Services to accelerate cancer therapeutics discovery and development. Contract research organization that specializes in early discovery and preclinical studies and provides cancer diagnostic biomarker development services. | Cancer Modeling Services, cancer, cancer therapeutics discovery, cancer diagnostic biomarker development services, | SCR_026128 | 2026-08-12 10:53:29 | 0 | ||||||||||||
|
openMINDS chemicals metadata model Resource Report Resource Website |
openMINDS chemicals metadata model (RRID:SCR_026248) | openMINDS_chemicals, openMINDS chemicals | software resource, source code | Software repository hosts one of the metadata models of the openMINDS metadata framework. It defines modular metadata schemas for describing chemical substances and mixtures. | metadata schema, graph metadata model, descriptions, chemical substances, mixtures, |
is related to: EBRAINS is related to: openMINDS metadata framework |
European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA1 720270; European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA2 785907; European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA3 945539; Helmholtz International BigBrain Analytics and Learning Laboratory (HIBALL) ; European Union’s Research and Innovation Program Horizon Europe - EBRAINS 2.0 101147319 |
Free, Available for download, Freely available | https://openminds-documentation.readthedocs.io/en/latest/schema_specifications/chemicals.html | SCR_026248 | 2026-08-12 10:53:30 | 0 | |||||||
|
HVSeeker Resource Report Resource Website 1+ mentions |
HVSeeker (RRID:SCR_026120) | software resource, software application | Software tool for distinguishing between bacterial and phage sequences. Consists of two separate models: one analyzing DNA sequences and the other focusing on proteins. | genome, bacteria, phage, sequence, distinguishing between bacterial and phage sequences, | German Research Foundation INST 37/935-1 FUGG; King Fahd University of Petroleum and Minerals |
Free, Available for download, Freely available, | SCR_026120 | 2026-08-12 10:53:41 | 1 | ||||||||||
|
Global Environment Facility Resource Report Resource Website |
Global Environment Facility (RRID:SCR_026241) | funding resource, nonprofit organization | Provides information about family of funds for the environment. With GEF support,countries address the root causes of challenges as they strive for international environmental goals. Fund data from the Global Environment Facility. | funds for environment, international environmental goals, | SCR_026241 | 2026-08-12 10:53:43 | 0 | ||||||||||||
|
NanoMnT Resource Report Resource Website 1+ mentions |
NanoMnT (RRID:SCR_026210) | software toolkit, software resource, source code | Software Python package for correcting sequencing errors within Short Tandem Repeat regions from Oxford Nanopore (ONT) sequencing data and genotyping monoallelic STR regions. | short tandem repeat, correcting sequencing errors, Oxford Nanopore, sequencing data, genotyping monoallelic STR regions, | Free, Available for download, Freely available | SCR_026210 | 2026-08-12 10:53:29 | 2 | |||||||||||
|
phenoptr Resource Report Resource Website 1+ mentions |
phenoptr (RRID:SCR_026104) | software resource, source code | Software R package for working with inForm data. Contains functions that make it easier to read and analyze data tables and images created by Akoya Biosciences' inForm software. | read data, analyze data, tables and images, Akoya Biosciences, inForm | Free, Available for download, Freely available, | https://github.com/akoyabio/phenoptr | SCR_026104 | 2026-08-12 10:53:40 | 8 | ||||||||||
|
WinSCP Resource Report Resource Website 1+ mentions |
WinSCP (RRID:SCR_026226) | software resource, software application | Free file manager, SSH File Transfer Protocol, File Transfer Protocol, WebDAV, Amazon S3, and secure copy protocol client for Microsoft Windows. | file manager, SSH File Transfer Protocol, File Transfer Protocol, WebDAV, Amazon S3, secure copy protocol client, Microsoft Windows, | Free, Available for download, Freely available | SCR_026226 | 2026-08-12 10:53:43 | 5 | |||||||||||
|
GALA Resource Report Resource Website 1+ mentions |
GALA (RRID:SCR_026184) | GALA | software resource, source code | Softawer framework for de novo chromosome-by-chromosome assembly with long reads. Long-reads gap-free chromosome-scale assembler. | long-reads gap-free chromosome-scale assembler | PMID:36639368 | Free, Available for download, Freely available | SCR_026184 | GAp-free Long-read Assembler | 2026-08-12 10:53:42 | 1 | ||||||||
|
ENVI Resource Report Resource Website 1+ mentions |
ENVI (RRID:SCR_026160) | software resource, source code | Deep learnining based variational inference method to integrate scRNA-seq with spatial transcriptomics data. ENVI learns to reconstruct spatial onto for dissociated scRNA-seq data and impute unimagd genes onto spatial data. | integrate scRNA-seq with spatial transcriptomics data, integrate, scRNA-seq data, unimagd genes, | Free, Available for download, Freely available | SCR_026160 | 2026-08-12 10:53:29 | 1 | |||||||||||
|
ChemPartner Resource Report Resource Website 1+ mentions |
ChemPartner (RRID:SCR_026139) | commercial organization, service resource | Life sciences contract research organization. Provides integrated life science services for drug discovery with expertise in chemistry, biology and pharmacology, DMPK, and exploratory toxicology as well as biologics discovery. | life science services, drug discovery, expertise, chemistry, biology, pharmacology, DMPK, exploratory toxicology, biologics discovery, | SCR_026139 | 2026-08-12 10:53:39 | 5 | ||||||||||||
|
mice Resource Report Resource Website 10+ mentions |
mice (RRID:SCR_026363) | MICE | data transfer software, data processing software, software resource, software application | Software package implements method to deal with missing data. The package creates multiple imputations (replacement values) for multivariate missing data.Various diagnostic plots are available to inspect the quality of the imputations. | missing data, multiple imputations, replacement values, multivariate missing data, | https://github.com/amices/mice | SCR_026363 | , mice: Multivariate Imputation by Chained Equations, Multivariate Imputation by Chained Equations | 2026-08-12 10:53:46 | 25 | |||||||||
|
gfastats Resource Report Resource Website 50+ mentions |
gfastats (RRID:SCR_026368) | software resource, source code | Standalone tool to compute assembly summary statistics and manipulate assembly sequences in FASTA, FASTQ or GFA [.gz] format. Gfastats stores assembly sequences internally in a GFA-like format. This feature allows gfastats to seamlessly convert FAST* to and from GFA [.gz] files. Gfastats can also build an assembly graph that can in turn be used to manipulate the underlying sequences following instructions provided by the user, while simultaneously generating key metrics for the new sequences. | summary statistics, genome assembly file manipulation, fasta, fastq, gfa, file conversion, | Rockefeller University ; German National Research Data Initiative |
PMID:35799367 | Free, Available for download, Freely available | SCR_026368 | 2026-08-12 10:53:44 | 55 | |||||||||
|
AutoDockTools Resource Report Resource Website 1000+ mentions |
AutoDockTools (RRID:SCR_026401) | ADT | software resource, software application | Software graphical user interface to help to set up which bonds will treated as rotatable in the ligand and to analyze dockings. Used for automated docking with selective receptor flexibility. Designed to predict how small molecules, such as substrates or drug candidates, bind to receptor of known 3D structure. | automated docking, selective receptor flexibility, predict binding, bind to receptor of known 3D structure, ligand, analyze dockings | NIGMS RO1 GM069832 | PMID:19399780 | Free, Available for download, Freely available | https://autodock.scripps.edu/ | SCR_026401 | AutoDockTools: the Graphical User Interface for AutoDock | 2026-08-12 10:53:32 | 2063 | ||||||
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FCS-GX Resource Report Resource Website 1+ mentions |
FCS-GX (RRID:SCR_026367) | software resource, source code | Software Foreign Contamination Screening - GX source code. Part of NCBI’s Foreign Contamination Screen (FCS) tool suite, optimized to identify and remove contaminant sequences in new genomes. | Foreign contamination screening, identify and remove contaminant sequences, sequences in new genomes, | National Center for Biotechnology Information of the National Library of Medicine | PMID:38409096 | Free, Available for download, Freely available | https://zenodo.org/records/10651084 | SCR_026367 | Foreign Contamination Screening - GX | 2026-08-12 10:53:46 | 6 | |||||||
|
Dabur Research Foundation Resource Report Resource Website |
Dabur Research Foundation (RRID:SCR_026375) | commercial organization, service resource | Dabur Research Foundation (DRF), established in 1979, is Indian Contract Research Organization offering comprehensive preclinical services in Drug Discovery and Development. Focused on identifying potential lead molecules and developing drugs to conducting IND enabling studies. | Indian Contract Research Organization, preclinical services in Drug Discovery and Development, | SCR_026375 | 2026-08-12 10:53:44 | 0 | ||||||||||||
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Synbio Technologies Resource Report Resource Website 1+ mentions |
Synbio Technologies (RRID:SCR_026374) | commercial organization, service resource | DNA synthesis company provides comprehensive services including gene synthesis, protein expression, gene editing, etc., supporting one-stop solutions for global users. | DNA synthesis, gene synthesis, protein expression, gene editing, | SCR_026374 | 2026-08-12 10:53:46 | 4 | ||||||||||||
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Qualimap 2 Resource Report Resource Website 10+ mentions |
Qualimap 2 (RRID:SCR_026258) | software resource, software application | Software platform-independent application written in Java and R that provides both Graphical User Inteface and command-line interface to facilitate quality control of alignment sequencing data and its derivatives like feature counts. Used for advanced multi-sample quality control for high-throughput sequencing data. | ChIP-seq, RNA-seq, quality control of alignment, advanced multi-sample quality control, high-throughput sequencing data, | DOI:10.1093/bioinformatics/btv566 | Free, Available for download, Freely available | SCR_026258 | 2026-08-12 10:53:42 | 14 |
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