Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
CD Biosynsis Resource Report Resource Website |
CD Biosynsis (RRID:SCR_026386) | commercial organization, service resource | Biotechnology company specialises in providing protein expression services. Services include all steps from gene expression and purification to protein expression and purification, including selection and optimization of multiple expression platforms including bacterial, yeast, insect cell, and mammalian cell platforms. | protein expression services, gene expression and purification, protein expression and purification, | SCR_026386 | 2026-08-12 10:53:32 | 0 | ||||||||||||
|
Ace Therapeutics Resource Report Resource Website |
Ace Therapeutics (RRID:SCR_026387) | commercial organization, service resource | Ace Therapeutics offers biomarker services for anti-psychotic drug development. Provides psychiatric biomarker testing services. Can perform experiments from variety of biological samples: tissues, cell lines, and RNA. | biomarker services for anti-psychotic drug development, psychiatric biomarker testing services, | SCR_026387 | 2026-08-12 10:53:46 | 0 | ||||||||||||
|
BrainLab Resource Report Resource Website 1+ mentions |
BrainLab (RRID:SCR_026474) | commercial organization, software resource | Privately held German medical technology company headquartered in Munich, Bavaria. Brainlab develops software and hardware for radiotherapy and radiosurgery, and the surgical fields of neurosurgery, ENT and craniomaxillofacial, spine surgery, and traumatic interventions. Brainlab software and hardware devices create and enhance data to improve critical surgeries, radiosurgery treatments and operating room efficiency. | medical technology company, software and hardware, radiotherapy and radiosurgery, surgical fields of neurosurgery, ENT and craniomaxillofacial, spine surgery, traumatic interventions, | SCR_026474 | 2026-08-12 10:53:33 | 5 | ||||||||||||
|
GreedyFHist Resource Report Resource Website 1+ mentions |
GreedyFHist (RRID:SCR_026477) | software resource, source code | Algorithm for registration of stained fresh frozen serial images. Used for registration of stained histology images. | Registration of stained histology images, stained fresh frozen serial images, images, histology images, images registration, | Free, Available for download, Freely available | SCR_026477 | 2026-08-12 10:53:33 | 1 | |||||||||||
|
ggtext Resource Report Resource Website 1+ mentions |
ggtext (RRID:SCR_026470) | software resource, source code | Software R package that enhances text rendering in ggplot2 by allowing the use of Markdown, HTML, and rich text formatting for annotations, labels, and titles in plots. | Improved text rendering support, ggplot2, annotations, labels, titles, plots | works with: ggplot2 | Free, Available for download, Freely available | https://CRAN.R-project.org/package=ggtext, https://wilkelab.org/ggtext/ | SCR_026470 | 2026-08-12 10:53:32 | 3 | |||||||||
|
chopper Resource Report Resource Website 10+ mentions |
chopper (RRID:SCR_026486) | software resource, source code | Software tool that combines the utility of NanoFilt and NanoLyse, for filtering sequencing reads based on quality, length, and contaminating sequences, delivers 7-fold speed up compared to the Python implementation, making use of the Rust-Bio library and Rust bindings to minimap2. | filtering sequencing reads, quality, length, contaminating sequences, | Flanders Institute for Biotechnology ; Belgium ; University of Antwerp |
PMID:37171891 | Free, Available for download, Freely available | SCR_026486 | 2026-08-12 10:53:48 | 14 | |||||||||
|
UCI Machine Learning Repository Resource Report Resource Website 10+ mentions |
UCI Machine Learning Repository (RRID:SCR_026571) | service resource, data repository, storage service resource | Collection of databases, domain theories, and data generators that are used by machine learning community for empirical analysis of machine learning algorithms. Datasets approved to be in the repository will be assigned Digital Object Identifier (DOI) if they do not already possess one. Datasets will be licensed under a Creative Commons Attribution 4.0 International license (CC BY 4.0) which allows for the sharing and adaptation of the datasets for any purpose, provided that the appropriate credit is given | Digital Object Identifier, dataset, databases, domain theories, data generators, empirical analysis of machine learning algorithms, | has parent organization: University of California at Irvine; California; USA | Free, Freely available | r3d100010960 | https://www.re3data.org/repository/r3d100010960, https://doi.org/10.17616/R3T91Q | SCR_026571 | UC Irvine Machine Learning Repository | 2026-08-12 10:53:34 | 25 | |||||||
|
NucleAIzer Resource Report Resource Website 1+ mentions |
NucleAIzer (RRID:SCR_026500) | software resource, source code | Software tool as parameter-free deep learning framework for nucleus segmentation using image style transfer. Cell segmentation tool. | nucleus segmentation, image style transfer, | NIGMS R35 GM122547; European Regional Development Funds ; Academy of Finland ; Swedish Research Council |
DOI:10.1016/j.cels.2020.04.003 | Free, Available for download, Freely available | SCR_026500 | 2026-08-12 10:53:49 | 4 | |||||||||
|
siFi Resource Report Resource Website |
siFi (RRID:SCR_026556) | software resource, source code | Software tool for RNAi-target design and off-target prediction. Used for long double-stranded RNAi-target design and off-target prediction. | RNAi-target design and off-target prediction, long double-stranded RNAi-target design, | Leibniz Institute of Plant Genetic and Crop Plant Research | PMID:31475020 | Free, Available for download, Freely available | SCR_026556 | siRNA-Finder | 2026-08-12 10:53:49 | 0 | ||||||||
|
GTestimate Resource Report Resource Website 1+ mentions |
GTestimate (RRID:SCR_026562) | data processing software, software resource, software application | Software R package for scRNA-seq normalization. Uses Simple Good-Turing estimator for the per cell relative gene expression estimation. | scRNA-seq, normalization, Good-Turing estimation, scRNA-seq normalization, gene expression estimation, | European Commission ; Austrian Science Fund |
DOI:10.1101/2024.07.02.601501 | Free, Available for download, Freely available | SCR_026562 | 2026-08-12 10:53:49 | 2 | |||||||||
|
NC4gate Resource Report Resource Website |
NC4gate (RRID:SCR_026445) | software resource, source code | Code for testing and operating NC4gate modules of modular gate system for autonomous control of rodent behavior. Fully customizable gate system that can be used in behavioral experiments involving rodent mazes (T-maze, Y-maze, radial arm, etc.). | OpenBehavior, modular gate system, autonomous control of rodent behavior, behavioral experiments, rodent mazes, | is listed by: OpenBehavior | DOI:10.1101/2024.11.22.624912 | Free, Available for download, Freely available | https://osf.io/uy7ez/, https://edspace.american.edu/openbehavior/project/nc4gate/ | SCR_026445 | 2026-08-12 10:53:32 | 0 | ||||||||
|
Liftoff Resource Report Resource Website 10+ mentions |
Liftoff (RRID:SCR_026535) | software resource, source code | Software genome annotation lift-over tool capable of mapping genes between two assemblies of the same or closely related species. Aligns genes from reference genome to target genome and finds the mapping that maximizes sequence identity while preserving the structure of each exon, transcript and gene. Used for accurate mapping of gene annotations. | Aligns genes, reference genome to target genome alignment, mapping of gene annotations, genome annotation lift-over, mapping genes between two assemblies of species, mapping genes, same or closely related species, | NHGRI R01 HG006677; NIGMS R35 GM130151 |
PMID:33320174 | Free, Available for download, Freely available | SCR_026535 | 2026-08-12 10:53:33 | 10 | |||||||||
|
SpheroidSegDeDeb Resource Report Resource Website 1+ mentions |
SpheroidSegDeDeb (RRID:SCR_026409) | software resource, software application | Software minimal tool for segmentation of irradiated tumor spheroids using optimized U-Net. | segmentation of irradiated tumor spheroids, segmentation, irradiated tumor spheroids, tumor spheroids, | Free, Available for download, Freely available, | SCR_026409 | 2026-08-12 10:53:47 | 1 | |||||||||||
|
mplab x ide Resource Report Resource Website |
mplab x ide (RRID:SCR_027844) | software resource, software application | Software program from Microchip, serving as a comprehensive, expandable platform for developing Microchip microcontroller applications, with many integrated tools like MPLAB Code Configurator (MCC) and MPLAB XC Compilers (free versions). Incorporates tools to discover, configure, develop, debug and qualify embedded designs for most of microcontrollers and digital signal controllers. MPLAB X IDE works seamlessly with the MPLAB development ecosystem of software and tools. | developing Microchip microcontroller applications, Microchip, microcontroller applications, | Free, Available for download | SCR_027844 | , MPLAB X Integrated Development Environment (IDE), MPLAB X IDE | 2026-08-12 10:54:03 | 0 | ||||||||||
|
LLM-PathwayCurator Resource Report Resource Website |
LLM-PathwayCurator (RRID:SCR_027964) | software resource, software application | Software quality-assurance layer for pathway enrichment interpretation that converts enrichment term lists into context-conditioned, evidence-linked, schema-bounded claims and assigns PASS/ABSTAIN/FAIL via predefined, rule-based audit gates (stability, context validity stress tests, evidence-link integrity, and contradiction checks), producing decision-grade reports with audit logs. The LLM is confined to proposal-only steps; final decisions are mechanical and reproducible. | quality-assurance layer, pathway enrichment interpretation, enrichment term lists, context-conditioned, evidence-linked, schema-bounded, claims, assigns PASS/ABSTAIN/FAIL audit gates, decision-grade reports with audit logs, | Free, Freely available | https://github.com/kenflab/LLM-PathwayCurator | SCR_027964 | 2026-08-12 10:54:18 | 0 | ||||||||||
|
lda Resource Report Resource Website |
lda (RRID:SCR_027850) | software resource, software application | Software application for topic modeling with latent Dirichlet allocation. | Topic modeling, latent Dirichlet allocation, Gibbs sampling, | Free, Available for download, Freely available | SCR_027850 | 2026-08-12 10:53:51 | 0 | |||||||||||
|
Tracker Resource Report Resource Website 1+ mentions |
Tracker (RRID:SCR_027845) | software resource, software application | Software video analysis and modeling tool developed within the Open Source Physics (OSP) Java framework. Allows frame-by-frame tracking of anatomical landmarks and articulated structures from video recordings, enabling the extraction of time-dependent kinematic variables such as displacement, velocity, and acceleration. Tracker is well suited for biomechanical analyses of articulated systems, as it supports joint-based rotations, reference-frame definition, and the export of quantitative motion data for further post-processing. | frame-by-frame tracking, anatomical landmarks and articulated structures, video recordings, extraction of time-dependent kinematic variables, | Free, Available for download, Freely available | SCR_027845 | Tracker Video Analysis and Modeling | 2026-08-12 10:53:51 | 6 | ||||||||||
|
Developmental Human Brain Atlas Ontology (DHBA) Resource Report Resource Website 1+ mentions |
Developmental Human Brain Atlas Ontology (DHBA) (RRID:SCR_027940) | ontology, data or information resource, controlled vocabulary, source code, software resource | Machine-readable framework designed to standardize, organize, and annotate the anatomical structures, developmental stages, and spatial relationships of the human brain during development. It is primarily derived from the Allen Developing Human Brain Atlas (BrainSpan) to provide a structured, hierarchical taxonomy for researchers. Application ontology built by combining ontologised versions of the Allen Institute Developing Human Brain Atlas (DHBA) StructureGraph mapped to Uberon. | Allen Developing Human Brain Atlas, hierarchical taxonomy, standardize, organize, annotate, anatomical structures, developmental stages, spatial relationships, human brain, brain during development, Uberon, | is related to: Allen Human Brain Atlas: BrainSpan (Atlas of the Developing Brain) | Free, Available for download, Freely available | SCR_027940 | 2026-08-12 10:53:52 | 1 | ||||||||||
|
BICAN Basal Ganglia Epigenome Explorer Resource Report Resource Website 1+ mentions |
BICAN Basal Ganglia Epigenome Explorer (RRID:SCR_027887) | data or information resource, portal | Portal that allows users to explore taxonomy-guided genome selections, visualize epigenetic assays, and analyze chromatin data across basal ganglia cell populations identified by the BRAIN Initiative Cell Atlas Network (BICAN) with an interactive research platform. The portal allows for investigation of several key epigenetic assays including associated with active enhancers and promoters, repressed genes, and constitutive heterochromatin. Used to analyze complex genomic and epigenomic data from the brain, helping identify specific cell types, understand gene regulation, and map disease-related molecular events, ultimately aiding in understanding neurological disorders like Alzheimer's, autism, and depression by revealing what goes wrong at the cellular level, leading to better gene therapies. | BICAN, explore taxonomy-guided genome selections, visualize epigenetic assays, analyze chromatin data, basal ganglia cell populations, basal ganglia epigenome, | is organization facet of: BRAIN Initiative Cell Atlas Network | Free, Freely available | SCR_027887 | 2026-08-12 10:54:04 | 1 | ||||||||||
|
STICR Resource Report Resource Website 1+ mentions |
STICR (RRID:SCR_027856) | software resource, source code | Code to conduct combinatorial barcoding. scRNA-seq-compatible tracer for identifying clonal relationships. | scRNA-seq-compatible tracer, identifying clonal relationships, conduct combinatorial barcoding, | Free, Available for download, Freely available | SCR_027856 | 2026-08-12 10:53:51 | 1 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
