Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://www.palisade.com/risk/
Software is add-in tool for Microsoft Excel that computes and tracks many different possible scenarios in model using Monte Carlo simulation.Helps make better decisions through risk modeling and analysis.
Proper citation: atRISK (RRID:SCR_022837) Copy
http://www.brainhealthdatabank.ca
Repository of many types and sources of data including, but not limited to, assessments, imaging, wearable, and biological samples, collected from research projects at the Centre for Addiction and Mental Health. Data that individuals choose to share to advance mental health.
Proper citation: BrainHealth Databank (RRID:SCR_022996) Copy
Repository of metadata and data that describes and provides access to diverse data sets generated by Arctic and Antarctic researchers.Metadata records follow ISO 19115 and Federal Geographic Data Committee standard formats to provide exchange with other data centres.Records cover wide range of disciplines from natural sciences and policy, to health and social sciences. The PDC Geospatial Search tool is available to the public and researchers alike and allows searching data using mapping interface and other parameters.
Proper citation: Canadian Polar Data Network (RRID:SCR_023143) Copy
Provides open access to Climate and Earth System Data from scientists at the centre and their collaborators. Helps to make your data open, FAIR and visually appealing. Each dataset and source code in the Bolin Centre Database is assigned a unique DOI. This makes it easy to cite and find your data. If dataset has more than one version, each version will have its own DOI.
Proper citation: Bolin Centre Database (RRID:SCR_023142) Copy
Scalable cloud-based platform for computational discovery designed for the brain health community.The BRAINCommons empowers the global research community by providing access to multi-model data, state-of-the-art tools and a secure interoperable system for data sharing.
Proper citation: BRAIN Commons (RRID:SCR_023140) Copy
https://researchdata.bbk.ac.uk
Repository allows all researchers at Birkbeck to upload data, and get DOI.Data in the Birkbeck Data Repository is stored on Arkivum server.This is a very secure storage space, which will allow our data to remain unchanged and accessible for many years after it is deposited.
Proper citation: Birkbeck Research Data (RRID:SCR_023139) Copy
Portuguese distributed infrastructure for biological data and Portuguese node of ELIXIR.
Proper citation: BioData Management Portal (RRID:SCR_023138) Copy
Astronomical data archive focused on optical, ultraviolet, and near infrared. Used for maximizing scientific accessibility and productivity of astronomical data. MAST hosts data from over dozen missions like Webb, Hubble, TESS, Kepler, and in the future Roman.
Proper citation: Barbara A. Mikulski Archive for Space Telescopes (RRID:SCR_023137) Copy
https://github.com/saeyslab/nichenetr
Software tool as R implementation of NicheNet method to predict active ligand-target links between interacting cells. NicheNet uses human or mouse gene expression data of interacting cells as input and combines this with prior model that integrates existing knowledge on ligand-to-target signaling paths. This allows to predict ligand-receptor interactions that might drive gene expression changes in cells of interest.
Proper citation: NicheNet (RRID:SCR_023158) Copy
https://github.com/openMetadataInitiative/openMINDS_SANDS
One of the metadata models of openMINDS metadata framework. Composed of modular metadata schemas for spatial anchoring of neuroscience data structures, including brain atlas definitions.
Proper citation: openMINDS SANDS metadata model (RRID:SCR_023498) Copy
https://awi.cuhk.edu.cn/KinasePhos/download.html
Software tool for redesign and expansion of prediction on kinase specific phosphorylation sites. Machine learning based kinase specific phosphorylation site prediction tool.
Proper citation: KinasePhos 3.0 (RRID:SCR_023595) Copy
https://rth.dk/resources/risearch/
Software tool for prediction of RNA–RNA, RNA–DNA, and DNA–DNA interactions. Both RIsearch1 and RIsearch2 enable quick localisation of potential near complementary interactions between given query and target sequences. RIsearch1 performs computation with whole sequences. RIsearch2 focuses on perfect complementary seed regions and extends them on both ends. User defined seed and extension constraints makes RIsearch2 applicable to all kinds of interaction predictions (e.g., siRNA and Cas9–gRNA off-target predictions).
Proper citation: RIsearch (RRID:SCR_023503) Copy
https://github.com/CompSynBioLab-KoreaUniv/FunGAP
Software tool to predict protein coding genes in fungal genome assembly. Performs gene prediction on given genome assembly and RNA-seq reads. Runs multiple gene predictors, evaluates all predicted genes, and assembles gene models that are highly supported by homology to known sequences.
Proper citation: FunGAP (RRID:SCR_023213) Copy
https://github.com/rrwick/Filtlong
Software tool for filtering long reads by quality.Can take set of long reads and produce smaller, better subset. Uses both read length and read identity when choosing which reads pass the filter.
Proper citation: Filtlong (RRID:SCR_024020) Copy
https://github.com/dmnfarrell/epitopepredict
Open source software tool as programmatic framework and command line tool designed to aid process of MHC binding prediction. Provides access to multiple binding prediction algorithms under single interface and scales for whole genomes using multiple target MHC alleles.Software should be run on Linux operating system. Ubuntu is recommended but most major distributions will be fine. Windows is not supported.
Proper citation: epitopepredict (RRID:SCR_019221) Copy
http://metagenomics.iiserb.ac.in/mp3/
Software tool for prediction of pathogenic proteins in genomic and metagenomic data. Used for identification of partial pathogenic proteins predicted from short (100-150 bp) metagenomic reads and also performs on complete protein sequences., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: MP3 tool (RRID:SCR_019282) Copy
https://github.com/BackofenLab/RNAProt
Software tool for modelling RNA binding protein binding preferences. Used to predict RPB binding sites. Computational RBP binding site prediction framework based on recurrent neural networks. Includes functionalities from dataset generation over model training to evaluation of binding preferences and binding site prediction.
Proper citation: RNAProt (RRID:SCR_021218) Copy
https://github.com/mlinderm/npsv
Software Python tool for standalone genotyping of deletion and insertion structural variants in short read whole genome sequencing data. Implements machine learning based approach for SV genotyping that employs NGS simulation to model the combined effects of the genomic region, sequencer and alignment pipeline.
Proper citation: NPSV (RRID:SCR_020984) Copy
https://github.com/hdmf-dev/hdmf-common-schema
Software tool to define collection of common, reusable data structures that build foundation for modeling of advanced data formats and is integrated with HDMF.Provided data structures include DynamicTable, VectorData, VectorIndex, ElementIdentifiers, DynamicTableRegion, AlignedDynamicTable and CSRMatrix.
Proper citation: HDMF Common Schema (RRID:SCR_021342) Copy
Society devoted to the advancement of the field of dialysis access through research, education and advocacy for patients with end stage kidney disease. They provide vascular access education for physicians, nurses, and other health care professionals and advocate for evidenced-based best clinical practices.
Proper citation: Vascular Access Society of the Americas (RRID:SCR_004058) Copy
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
You can save any searches you perform for quick access to later from here.
We recognized your search term and included synonyms and inferred terms along side your term to help get the data you are looking for.
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the sources that were queried against in your search that you can investigate further.
Here are the categories present within RRID that you can filter your data on
Here are the subcategories present within this category that you can filter your data on
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
