Tools   Select Another Resource Report Type

https://bellcurve.jp/ex/

Software tool for statistical analysis by BellCurve that adds statistical analysis methods to Excel menu .

Proper citation: Excel Statistics (RRID:SCR_017294) Copy   

•   Source: SciCrunch Registry

http://bio3d.colorado.edu/SerialEM/

Software tool for automated EM data acquisition. Used for efficient tilt series acquisition and interface for image capture, display, and storage and for control of some aspects of microscope function.

Proper citation: SerialEM (RRID:SCR_017293) Copy   

•   Source: SciCrunch Registry

http://140.120.197.173/Ecology/prod02.htm

Software tool used to conduct life table analysis focused on development of cohort or population for animal species with two sexes. Parent organization is National Chung Hsing University, Taichung, Taiwan.

Proper citation: TWOSEX-MSChart (RRID:SCR_017298) Copy   

•   Source: SciCrunch Registry

https://github.com/BioInf-Wuerzburg/proovread

Software tool for PacBio hybrid error correction through iterative short read consensus.

Proper citation: Proovread (RRID:SCR_017331) Copy   

•   Source: SciCrunch Registry

https://syngoportal.org/

Evidence based, expert curated knowledge base for synapse. Universal reference for synapse research and online analysis platform for interpretation of omics data. Interactive knowledge base that accumulates available research about synapse biology using Gene Ontology annotations to novel ontology terms.

Proper citation: SynGO (RRID:SCR_017330) Copy   

•   Source: SciCrunch Registry

https://www.electrontomography.org/?page_id=446

Software tool for electron tomography and 3D image processing. Software package used in electron tomography for marker free alignment and 3D reconstruction of tilt series. Tomography software package distributed for linux operating system and developed by Hanspeter Winkler.

Proper citation: Protomo (RRID:SCR_017296) Copy   

•   Source: SciCrunch Registry

https://sites.google.com/site/3demimageprocessing/tomo3d

Software tool for fast tomographic reconstruction on multicore computers. Used for electron tomography studies with increasing resolution needs.

Proper citation: TOMO3D (RRID:SCR_017295) Copy   

•   Source: SciCrunch Registry

http://project-dare.eu/

EU data infrastructure with workflow connectivity layer. Common Workflow Language. Project pioneers methodologies and integrated set of supporting technologies that will transform European RIs productivity and rate of innovation when three challenges – extreme data, extreme computation and extreme complexity – are faced simultaneously.

Proper citation: Project DARE (RRID:SCR_017538) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/phangorn/index.html

Software R package for phylogenetic reconstruction and analysis. Used for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation. Allows to compare trees, models selection and offers visualizations for trees and split networks.

Proper citation: Phangorn (RRID:SCR_017302) Copy   

•   Source: SciCrunch Registry

https://www.beilstein-strenda-db.org/strenda/

Storage and search platform supported by Beilstein-Institut that incorporates STRENDA Guidelines. For authors who prepare manuscript containing functional enzymology data, STRENDA DB provides means to ensure that data sets are complete and valid before submitting them to journal.

Proper citation: STRENDA (RRID:SCR_017422) Copy   

•   Source: SciCrunch Registry

https://github.com/padster/pyDynamo/

Software tool for neuron timelapse reconstruction, registration and analysis for Dynamic Morphometrics.

Proper citation: Dynamo (RRID:SCR_017541) Copy   

•   Source: SciCrunch Registry

https://beast.community/tempest

Software tool for investigating temporal signal and clocklikeness of molecular phylogenies. Used for visualization and analysis of temporally sampled sequence data to assess whether there is sufficient temporal signal in data to proceed with phylogenetic molecular clock analysis, and to identify sequences whose genetic divergence and sampling date are incongruent. Not available for downloading as of August 8, 2019.

Proper citation: TempEst (RRID:SCR_017304) Copy   

•   Source: SciCrunch Registry

https://www.ebi.ac.uk/eva/

Open access database of all types of genetic variation data from all species. Users can download data from any study, or submit their own data to archive. You can also query all variants by study, gene, chromosomal location or dbSNP identifier using our Variant Browser.

Proper citation: European Variation Archive (EVA) (RRID:SCR_017425) Copy   

•   Source: SciCrunch Registry

https://scdevdb.deepomics.org/

Database for insights into single cell gene expression profiles during human developmental processes. Interactive database provides DE gene lists in each developmental pathway, t-SNE map, and GO and KEGG enrichment analysis based on these differential genes.

Proper citation: Single Cell Developmental Database (RRID:SCR_017546) Copy   

•   Source: SciCrunch Registry

https://software.broadinstitute.org/morpheus/

Software tool for versatile matrix visualization and analysis. Program to generate heatmaps from input data. JavaScript matrix visualization and analysis.

Proper citation: Morpheus by Broad Institute (RRID:SCR_017386) Copy   

•   Source: SciCrunch Registry

http://pcddb.cryst.bbk.ac.uk/home.php

Public repository for archiving circular dichroism spectroscopic data and associated bioinformatics and experimental metadata. For authors to deposit experimental data as well as detailed information on methods and calculations associated with published work. Includes links for each entry to bioinformatics databases. Data are freely available to accessors either as single files or as complete data bank downloads.

Proper citation: Protein Circular Dichroism Data Bank (PCDDB) (RRID:SCR_017428) Copy   

•   Source: SciCrunch Registry

https://www.ibis-network.org/index.html

Research study of brain development in infants and children with autism. Consortium of researchers across North America that work together to discover early changes in brain development of young children with autism. Participants will travel to their closest study location to receive developmental and behavioral assessments, MRI scan of the brain. Participants will be reimbursed for travel and related expenses. Families of children at high risk for developing symptoms of autism will receive assistance with referrals for local services. check if data repository is in the papers

Proper citation: IBIS Network (RRID:SCR_017399) Copy   

•   Source: SciCrunch Registry

https://ldlink.nci.nih.gov/?tab=ldmatrix

Software tool to create interactive heatmap matrix of pairwise linkage disequilibrium statistics.

Proper citation: LDMatrix (RRID:SCR_017391) Copy   

•   Source: SciCrunch Registry

https://www.qiagenbioinformatics.com/products/clc-genomics-server/

Commercially available software tool for high throughput sequencing analysis, designed for use on central compute cluster or server. Can handle data volumes beyond capacity of desktop systems and manages submission of many jobs via its own queuing system or through submission of jobs to third party grid scheduler.

Proper citation: CLC Genomics Server (RRID:SCR_017396) Copy   

•   Source: SciCrunch Registry

https://www.daqcord.org/

Software tool for practical self assessment and reporting method for clinical research studies, to capture key information about data acquisition and quality control measures. Linked to dataset so that potential research collaborators can determine if data meets their needs and expectations.

Proper citation: DAQCORD (RRID:SCR_017395) Copy   

•   Source: SciCrunch Registry