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Provides oligonucleotides. Synthesizes custom DNA/RNA oligonucleotides for scientific and therapeutic communities.
Proper citation: Oligo Factory (RRID:SCR_012567) Copy
http://www.scienceexchange.com/facilities/trevigen
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 19,2024. Trevigen Cell Assays (TCA), a division of Trevigen, Inc., was established in 2008 to conduct contract research work for the pharmaceutical, biotechnology, government and academic segments of the medical research market. TCA specializes in designing and conducting assays for lead compounds and genotoxic screening based on DNA damage and repair as well as cancer cell behavior.
Proper citation: Trevigen Cell Assays (RRID:SCR_012449) Copy
https://www.tglabs.com/home.html
TG Labs Company, located in Colorado, has two divisions Technical division and Industrial division. Technical Division operates scientific, medical and chemical discovery laboratory in Englewood, Colorado. This division also develops special devices, equipment and processes for the medical, chemical and environmental industries. We offer proven solutions from concept through full scale production, including regulatory standards.
Proper citation: TG Labs (RRID:SCR_012581) Copy
http://www.scienceexchange.com/facilities/ohio-university
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 14,2024. Portal, Core facility
Proper citation: Ohio University Labs and Facilities (RRID:SCR_012461) Copy
https://us.progen.com/About-Us/
ProGen - Protein & Gene Engineering specializes in custom molecular biology services including DNA cloning, sub-cloning, codon optimized artificial gene synthesis, site-directed mutagenesis and large scale custom projects such as DNA isolation and purification. The custom products of the company are used for gene engineering to study gene expression regulatory mechanisms, protein engineering, and analysis of gene and protein function. Customers of the company include research laboratories in academia, clinical researchers in medical institutes and biotechnology companies. In addition to our custom cloning services, as an authorized Israeli representative of SBS Genetech Co., we market molecular biology products of SBS at competitive prices. SBS is one of the largest sources of synthetic oligonucleotides. The range of the products cover biochemicals, enzymes and PCR products. As a young company we are highly motivated to deliver high quality services and products at lowest prices with a rapid schedule of delivery. We guarantee full customer satisfaction on all products and services.
Proper citation: ProGen - Protein and Gene Engineering (RRID:SCR_012405) Copy
We provide custom synthesis of peptides and peptide conjugates.
Proper citation: Ohio Peptide (RRID:SCR_012407) Copy
A global evaluation of the conservation status of plant and animal species. The IUCN Red List plays a prominent role in guiding conservation activities of governments, NGOs and scientific institutions. The introduction in 1994 of a scientifically rigorous approach to determine risks of extinction that is applicable to all species, has become a world standard. In order to produce The IUCN Red List of Threatened Species, the IUCN Global Species Programme working with the IUCN Survival Commission (SSC) and with members of IUCN draws on and mobilizes a network of scientists and partner organizations working in almost every country in the world, who collectively hold what is likely the most complete scientific knowledge base on the biology and conservation status of species. The IUCN Red List is underpinned by information management tools (the Species Information Service) which facilitate the collection, management and processing of species data from workshop to publication on The IUCN Red List.
Proper citation: IUCN (RRID:SCR_012758) Copy
http://www.sourceforge.net/projects/matcont
MATCONT is a graphical MATLAB package for the interactive numerical study of parameterized dynamical systems. It is developed in parallel with the command line continuation toolbox CL_MATCONT and with the command line continuation toolbox CL_MATCONTM for the interactive numerical study of parameterized maps and iterates of maps. MATCONT and CL_MATCONT allow the numerical continuation of equilibria, limit cycles and homoclinic orbits, detection of codimension 1 and 2 bifurcations, continuation of the codimension 1 bifurcations and computation of their normal forms. For equilibria normal form coefficients of codimension 2 bifurcations are also computed, as well as switching to the codimension 1 curves in codimension 2 points. CL_MATCONTM provides similar facilities for maps and iterates of maps, including normal form coefficients of codimension 2 bifurcations and continuation of homoclinic and heteroclinic connections and tangencies of such connections.
Proper citation: MATCONT and CL MATCONT: Continuation Software in Matlab (RRID:SCR_012822) Copy
http://folk.uio.no/thoree/FEST/
An R package for simulations and likelihood calculations of pair-wise family relationships using DNA marker data. (entry from Genetic Analysis Software)
Proper citation: R/FEST (RRID:SCR_013347) Copy
A database and storage service resource which allows users to create, view, share, and download information from companion websites. RunMyCode allows users to create companion websites for their scientific publications. Users can share and download computer code and data from companion websites made with RunMyCode. Any software and data format is compatible with RunMyCode.
Proper citation: RunMyCode (RRID:SCR_014011) Copy
A peer review management system which encourages timely and high quality peer review by using a credit system. Reviewers complete reviews using a general webform on academickarma.org, and if that review is submited to an editor within ten days, the reviewer is awarded a certain amount of points (karma credits). The author and editor both receive the review. Editors can use Academic Karma to identify specialized reviewers for future reference. A reviewer's personal profile, which includes the amount of karma credits they've received, is connected to their ORCID account and publication record for an overview of the reviewer's work.
Proper citation: Academic Karma (RRID:SCR_014017) Copy
http://chgv.org/GenicIntolerance/
A gene-based score intended to help in the interpretation of human sequence data. The score is designed to rank genes in terms of whether they have more or less common functional genetic variation relative to the genome wide expectation given the amount of apparently neutral variation the gene has. A gene with a positive score has more common functional variation, and a gene with a negative score has less and is referred to as intolerant.
Proper citation: Residual Variation Intolerance Score (RVIS) (RRID:SCR_013850) Copy
A global network group resource which provides crowdsourcing services for “innovation solutions.” InnoCentive utilizes an innovation framework, called Challenge Drive Innovation, which is based on leveraging open innovation and crowdsourcing. Software tools are available for idea management, innovation management, and external crowdsourcing programs and competitions.
Proper citation: InnoCentive (RRID:SCR_013851) Copy
An international consortium whose goals are to enable faster comparative studies and develop tools that make analysis accessible to the wider scientific community. InterMOD is an open source data warehouse where users can query and input their own data, access analysis tools, and create their own InterMine. Five core mines make make up InterMOD: RGD, SGD ZFIN, MGI, and WormBase.
Proper citation: InterMOD (RRID:SCR_013808) Copy
A simulation software package which hosts a collection of algorithms used to run bioelectric field simulations inside of SCIRun. The software provided in the package may be used for geometric modeling, simulation, and visualization for solving bioelectric field problems.
Proper citation: BioPSE (RRID:SCR_014044) Copy
http://www.nitrc.org/projects/l-neuron
A program which creates anatomically realistic virtual neurons using the formalism of the Lyndenmayer systems to implement sets of neuroanatomical rules discovered by several research groups. The program algorithms read in experimental data - in the form of statistical distributions - to generate virtual structures. L-Neuron samples the values of the parameters within these statistical distributions in a stochastic (random) fashion during dendritic growth.
Proper citation: L-Neuron (RRID:SCR_014132) Copy
http://www.lsm.tugraz.at/csim/
Software tool for simulating heterogeneous networks composed of different model neurons and synapses. CSIM simulates networks containing up to a few thousand neurons and up to the order of 1.000.000 synapses. It is capable of supporting different levels of modeling and has an object oriented design. A user manual is available on the site.
Proper citation: CSIM (RRID:SCR_014256) Copy
http://www.cse.unr.edu/brain/ncs
A neural simulator which models integrate-and-fire neurons with conductance-based synapses. NCS supports simulations for larger models and also supports real-time neurorobotics applications. Two versions of NCS are available: NCS 5, which is based on CPU cluster; and NCS 6, a multi-box, multi-GPU version. NCS 5 models integrate-and-fire neurons with conductance-based synapses using two clusters: four SUN 4600 machines and 208 Opteron cores. NCS 6 is a neural simulator for heterogeneous clusters of both CPUs and GPUS.
Proper citation: NeoCortical Simulator (RRID:SCR_014257) Copy
http://www.nitrc.org/projects/vertex
A Matlab tool for simulating extracellular potential recordings in spiking neural network (SNN) models. VERTEX is designed to facilitate the simulation of extracellular potentials generated by activity in SNNs; in particular, spatially-organised networks containing thousands or hundreds of thousands of neurons. It has a limited scope but has a simpler user interface so that a simulation can be specified simply by setting some parameters and run using a few function calls.
Proper citation: Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX) (RRID:SCR_014178) Copy
http://sysbio.rnet.missouri.edu/multicom_toolbox/NNCon%201.0.html
Protein contact map prediction is useful for protein folding rate prediction, model selection and 3D structure prediction. Here we describe NNcon, a fast and reliable contact map prediction server and software. NNcon was ranked among the most accurate residue contact predictors in the Eighth Critical Assessment of Techniques for Protein Structure Prediction (CASP8), 2008.
Proper citation: NNcon (RRID:SCR_014292) Copy
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