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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GDA Resource Report Resource Website 10+ mentions |
GDA (RRID:SCR_009187) | GDA | software application, software resource | Software application designed to accompany the second edition of Bruce Weir''s book Genetic Data Analysis (1996. Sinauer Associates) (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows, (3.1/95/nt), macos, (10.2.8/10.3) | is listed by: Genetic Analysis Software | nlx_154326 | SCR_009187 | Genetic Data Analysis | 2026-08-04 09:42:20 | 18 | ||||||||
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HAPBLOCK Resource Report Resource Website 1+ mentions |
HAPBLOCK (RRID:SCR_009220) | HAPBLOCK | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-windows, linux, unix, solaris | is listed by: Genetic Analysis Software | nlx_154375 | SCR_009220 | a dynamical programming algorithm for haplotype block partitioning | 2026-08-04 09:42:19 | 6 | ||||||||
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GAS Resource Report Resource Website 10+ mentions |
GAS (RRID:SCR_009184) | GAS | software application, software resource | Software application for statistical analysis of genetic linkage data, sib-pair analysis, association studies (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-dos, unix, (sunos/solaris/aix/osf1/ultrix/sgi-irix), vms | is listed by: Genetic Analysis Software | nlx_154322 | SCR_009184 | Genetic Analysis System | 2026-08-04 09:42:18 | 43 | ||||||||
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GAIA Resource Report Resource Website 100+ mentions |
GAIA (RRID:SCR_009182) | GAIA | software application, software resource | Web-based application for testing for locus-locus interaction using genetic association. It is based upon the case-control study design and is designed so that non-specialists may routinely apply tests for interaction. GAIA allows simple testing of both additive and additive plus dominance interaction models and includes permutation testing to appropriately correct for multiple testing. The application is useful for both candidate gene based studies and genome-wide association studies. For large scale studies GAIA includes a screening approach which prioritizes loci for further interaction analysis. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, perl, r, web-based | is listed by: Genetic Analysis Software | DOI:10.1186/1471-2350-7-34 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154320 | http://www.bbu.cf.ac.uk/html/research/biostats.htm | SCR_009182 | Genetic Association Interaction Analysis | 2026-08-04 09:42:19 | 182 | |||||
|
FIRSTORD Resource Report Resource Website 1+ mentions |
FIRSTORD (RRID:SCR_009180) | FIRSTORD | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application for demonstration of method for preliminary ordering of loci based on two-point lod scores. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154317 | SCR_009180 | 2026-08-04 09:42:20 | 2 | ||||||||
|
FISHER Resource Report Resource Website 10000+ mentions |
FISHER (RRID:SCR_009181) | FISHER | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on February 1st, 2022. Software application for genetic analysis of classical biometric traits like blood pressure or height that are caused by a combination of polygenic inheritance and complex environmental forces. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran77 | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154318 | SCR_009181 | 2026-08-04 09:42:18 | 40379 | ||||||||
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LOGINSERM ESTIHAPLO Resource Report Resource Website |
LOGINSERM ESTIHAPLO (RRID:SCR_009258) | LOGINSERM_ESTIHAPLO | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154437 | SCR_009258 | 2026-08-04 09:42:20 | 0 | |||||||||
|
LNKTOCRI Resource Report Resource Website |
LNKTOCRI (RRID:SCR_009256) | LNKTOCRI | software application, software resource | Software application for conversion of LINKAGE format data files to CRI-MAP format (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, unix, ms-dos | is listed by: Genetic Analysis Software | nlx_154433 | SCR_009256 | 2026-08-04 09:42:20 | 0 | |||||||||
|
LINKBASE Resource Report Resource Website |
LINKBASE (RRID:SCR_009254) | LINKBASE | software application, software resource | An easy and practical database-program made for researchers who want to connect the genotype data produced by automatic sequencers ( ABI Prism 377 (Perkin Elmer) and ALF (Pharmacia) ) to linkage and sib-pair programs. (entry from Genetic Analysis Software) | gene, genetic, genomic, delphi 1.0, ms-windows, (3.1/95/nt) | is listed by: Genetic Analysis Software | nlx_154431 | SCR_009254 | 2026-08-04 09:42:20 | 0 | |||||||||
|
LIPED Resource Report Resource Website 1+ mentions |
LIPED (RRID:SCR_009255) | LIPED | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, ms-windows | is listed by: Genetic Analysis Software | nlx_154432 | SCR_009255 | Likelihoods in Pedigrees | 2026-08-04 09:42:20 | 5 | ||||||||
|
J/QTL Resource Report Resource Website 10+ mentions |
J/QTL (RRID:SCR_009250) | J/QTL | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 9, 2023. A Java GUI for the popular QTL data analysis software R/QTL that provides a flexible and powerful working environment for users to perform a variety of tasks. (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154418 | SCR_009250 | 2026-08-04 09:42:20 | 26 | ||||||||
|
JPSGCS Resource Report Resource Website 1+ mentions |
JPSGCS (RRID:SCR_009249) | JPSGCS | software application, software resource | Software application to address problems in statistical genetics; however, they include several programs and packages that may be more generally useful, for instance, programs to draw and manipulate graphs, simulation programs, and programs to estimate graphical models. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, linux, macos, ms-windows | is listed by: Genetic Analysis Software | nlx_154417 | SCR_009249 | Java Programs for Statistical Genetics and Computational Statistics GENEPI.JAR | 2026-08-04 09:42:20 | 1 | ||||||||
|
NOPAR Resource Report Resource Website 1+ mentions |
NOPAR (RRID:SCR_009246) | NOPAR | software application, software resource | Software application for non-parametric linkage and association tests primarily for a quantitative trait (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, unix, (sunos) | is listed by: Genetic Analysis Software | nlx_154414 | SCR_009246 | 2026-08-04 09:42:20 | 1 | |||||||||
|
HTR Resource Report Resource Website 1+ mentions |
HTR (RRID:SCR_009241) | HTR | software application, software resource | Software application for haplotype association mapping using unrelated individuals; fixed and sliding window analysis; overall tests and tests for individual haplotype effects (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, bash shell, ms-windows, unix, solaris, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154402, biotools:htr | https://bio.tools/htr | SCR_009241 | Haplotype Trend Regression | 2026-08-04 09:42:20 | 1 | |||||||
|
MADMAPPER Resource Report Resource Website 10+ mentions |
MADMAPPER (RRID:SCR_009267) | MADMAPPER | software application, software resource | Suite of Python scripts for quality control of genetic markers, group analysis and inference of linear order of markers on linkage groups. MadMapper_RECBIT analyses raw marker scores for recombinant inbred lines. MadMapper_RECBIT generates pairwise distance scores for all markers, clusters based on pairwise distances, identifies genetic bins, assigns new markers to known linkage groups, validates allele calls, and assigns quality classes to each marker based on several criteria and cutoff values. MadMapper_XDELTA utilizes new algorithm, Minimum Entropy Approach and Best-Fit Extension, to infer linear order of markers. MadMapper_XDELTA analyzes two-dimensional matrices of all pairwise scores and finds best map that has minimal total sum of differences between adjacent cells (map with lowest entropy). MadMapper is freely available at http://www.atgc.org/XLinkage/MadMapper/ (entry from Genetic Analysis Software) | gene, genetic, genomic, python | is listed by: Genetic Analysis Software | nlx_154447 | SCR_009267 | 2026-08-04 09:42:21 | 13 | |||||||||
|
LTSOFT Resource Report Resource Website 1+ mentions |
LTSOFT (RRID:SCR_009266) | LTSOFT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. A software suite designed to more powerfully leverage clinical-covariates such as age, bmi, smoking status, and gender when conducting case-control association studies. Including these covariates in standard regression models is not only suboptimal, but can in many instances reduce power. LTSOFT employs a liability threshold model approach that takes advantage of known epidemiological results to better model the covariates'' relationship to the phenotype of interest (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154445 | SCR_009266 | 2026-08-04 09:42:20 | 3 | ||||||||
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LRP Resource Report Resource Website 1+ mentions |
LRP (RRID:SCR_009263) | LRP | software application, software resource | Software application that is part of the LINKAGE auxiliary program (entry from Genetic Analysis Software) | gene, genetic, genomic, c and pascal, unix, vms, ms-dos, os2 | is listed by: Genetic Analysis Software | nlx_154442 | SCR_009263 | Linkage Report Program | 2026-08-04 09:42:21 | 1 | ||||||||
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L-POP Resource Report Resource Website 1+ mentions |
L-POP (RRID:SCR_009262) | L-POP | software application, software resource | Software application that detects population stratification in samples of unrelated individuals for whom a number of unlinked genotypes have been measured. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154441 | SCR_009262 | 2026-08-04 09:42:20 | 2 | ||||||||
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LOKI Resource Report Resource Website 10+ mentions |
LOKI (RRID:SCR_009260) | LOKI | software application, software resource | Software program for analyses a quantitative trait observed on large pedigrees using Markov chain Monte Carlo multipoint linkage and segregation analysis. The trait may be determined by multiple loci. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, (solaris 2.5, osf1 3.2, and others), linux, (2.0.30) | is listed by: Genetic Analysis Software | nlx_154439 | SCR_009260 | PANGAEA | 2026-08-04 09:42:20 | 29 | ||||||||
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rpkmforgenes.py Resource Report Resource Website 1+ mentions |
rpkmforgenes.py (RRID:SCR_014938) | data processing software, source code, software application, data analysis software, sequence analysis software, software resource | Python script which calculates gene expression for RNA-Sequencing data. It analyzes files in formats such as BED, BAM, and SAM to output data about RNA. | rna, sequencing, rna-seq, python, script, data analysis, genetic, gene analysis | has parent organization: Karolinska Institute; Stockholm; Sweden | Free, Available for download | http://sandberg.cmb.ki.se/media/data/rnaseq/rpkmforgenes.py | SCR_014938 | 2026-08-05 10:46:13 | 2 |
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