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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Ready Set Potato Resource Report Resource Website |
Ready Set Potato (RRID:SCR_025289) | software resource, software application | Software tool that helps users write experimental protocols. | experimental protocols, write experimental protocols, | Restricted | SCR_025289 | 2026-08-12 10:53:27 | 0 | |||||||||||
|
yEd Resource Report Resource Website 1+ mentions |
yEd (RRID:SCR_025325) | software resource, software application | Software desktop application as general purpose diagramming program with multi-document interface. Cross-platform Java application to generate high-quality diagrams. Runs on Windows, Linux, Mac OS, and other platforms that support Java Virtual Machine. | yWorks, Java, general purpose diagramming program, diagrams, | Restricted | SCR_025325 | yWorks yEd Graph Editor | 2026-08-12 10:53:28 | 7 | ||||||||||
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Thermo Scientific NanoDrop 1000 Software Resource Report Resource Website |
Thermo Scientific NanoDrop 1000 Software (RRID:SCR_025282) | software resource, software application | Operating software for Thermo Scientific NanoDrop 1000 Spectrophotometer. Free NanoDrop operating software to update your instrument. | Operating software, Thermo Scientific NanoDrop 1000 Spectrophotometer, update your instrument, | works with: Thermo Fisher: Nanodrop 1000 Spectrophotometer | Free, Available for download, Freely available | SCR_025282 | 2026-08-12 10:53:23 | 0 | ||||||||||
|
Clust Resource Report Resource Website 10+ mentions |
Clust (RRID:SCR_025283) | software toolkit, software resource, source code | Software package for automatic extraction of optimal co-expressed gene clusters from gene expression data. Automatic and optimised consensus clustering of one or more heterogeneous datasets. | automatic extraction, optimal co-expressed gene clusters, gene expression data, | Bill and Melinda Gates Foundation ; Royal Society ; European Union Horizon 2020 |
PMID:30359297 | Free, Available for download, Freely available | SCR_025283 | 2026-08-12 10:53:22 | 24 | |||||||||
|
TooManyCellsInteractive Resource Report Resource Website 1+ mentions |
TooManyCellsInteractive (RRID:SCR_025315) | TMCI | web application, software resource, source code | Web browser-based JavaScript application for visualizing hierarchical cellular populations as interactive radial tree. Allows users to explore, filter, and manipulate hierarchical data structures through intuitive interface while also enabling batch export of high-quality custom graphics. | Single-Cell Analysis, Data Visualization, hierarchical data structures, visualizing hierarchical cellular populations, interactive radial tree, custom graphics, |
is related to: too-many-cells-python is related to: TooManyCells |
Free, Available for download, Freely available | https://schwartzlab-methods.github.io/too-many-cells-interactive/ | SCR_025315 | 2026-08-12 10:53:24 | 1 | ||||||||
|
WhatsHap Resource Report Resource Website 50+ mentions |
WhatsHap (RRID:SCR_025319) | software resource, source code | Software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. Used for long reads, but works also well with short reads. | Read-based phasing, genomic variants, haplotype assembly, | Swedish Knut and Alice Wallenberg Foundation | DOI:10.1101/085050 | Free, Available for download, Freely available | SCR_025319 | 2026-08-12 10:53:24 | 97 | |||||||||
|
ParaVision 360 Resource Report Resource Website 1+ mentions |
ParaVision 360 (RRID:SCR_025295) | software resource, software application | Software for preclinical imaging integrated with Bruker MRI spectrometers. Used with Bruker MRI, PET/MR, and PET/CT instruments. Enables easy and high throughput imaging. All images, protocols, and subjects are in one location with inherent co-registration, image fusion, data processing, and analysis. | preclinical imaging integrated with Bruker MRI spectrometers, preclinical imaging, Bruker MRI spectrometers, data processing, data analysis, | Restricted | SCR_025295 | 2026-08-12 10:53:23 | 2 | |||||||||||
|
too-many-cells-python Resource Report Resource Website 1+ mentions |
too-many-cells-python (RRID:SCR_025327) | software toolkit, software resource, source code | Software Python implementation of clustering tool named TooManyCells. Software package for spectral clustering. | spectral clustering, Python, radial tree, |
is related to: TooManyCellsInteractive is related to: TooManyCells |
Free, Available for downlaod, Freely available | https://github.com/JRR3/toomanycells, https://pypi.org/project/toomanycells/ | SCR_025327 | 2026-08-12 10:53:22 | 1 | |||||||||
|
MOVARSim Resource Report Resource Website 1+ mentions |
MOVARSim (RRID:SCR_025388) | software resource, source code | Software simulator that leverages data-driven information to set both variants and reads characteristics, producing realistic tumoral samples. Computational modelling of cancer-specific variants and sequencing reads characteristics for realistic tumoral sample simulation. | simulator, leverages data-driven information, variants and reads characteristics, producing realistic tumoral samples, modelling of cancer-specific variants and sequencing reads, | has parent organization: University of Padua; Padua; Italy | Free, Available for download, Freely available | SCR_025388 | Modelling Of cancer-specific Variants And sequencing Reads Simulation | 2026-08-12 10:53:29 | 1 | |||||||||
|
glmulti Resource Report Resource Website |
glmulti (RRID:SCR_025423) | software toolkit, software resource, source code | Software R package for model selection and multimodel inference. Used for automated model selection and model-averaging. Provides wrapper for glm and other functions, automatically generating all possible models with specified response and explanatory variables. | R, model selection, multimodel inference. | Free, Available for download, Freely available | SCR_025423 | 2026-08-12 10:53:26 | 0 | |||||||||||
|
lcMLkin Resource Report Resource Website 1+ mentions |
lcMLkin (RRID:SCR_025418) | software resource, source code | C++ program to infer biological relatedness from low coverage 2nd generation sequencing data. It uses information from genotype likelihoods rather than observed genotypes in maximum likelihood framework in order to estimate the overall coefficient of relatedness as well as individual kinship components between two samples. Maximum Likelihood Estimation of Biological Relatedness from Low Coverage Sequencing Data. | C++, Maximum Likelihood Estimation, Biological Relatedness, Low Coverage Sequencing Data, | NSF | DOI:10.1101/023374 | Free, Available for download, Freely available | SCR_025418 | Maximum Likelihood Estimation of Relatedness | 2026-08-12 10:53:26 | 5 | ||||||||
|
COMSOL model of Magnetic coil Resource Report Resource Website |
COMSOL model of Magnetic coil (RRID:SCR_025426) | software resource, source code | Software application as model of magnetic field distribution of magnetic coil visualized using COMSOL Multiphysics. | Simulation, magnetic coil visualization, magnetic field distribution, | Free, Available for Download, Freely available, | SCR_025426 | 2026-08-12 10:53:26 | 0 | |||||||||||
|
linear actuator Resource Report Resource Website |
linear actuator (RRID:SCR_021613) | software resource, source code | Code and model files for open source linear actuator. Part of Pearce Lab Syringe Pump system. | Pearce Lab Syringe Pump, OpenBehavior |
is listed by: OpenBehavior is related to: Pearce Lab Syringe Pump project |
DOI:10.1371/journal.pone.0107216 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/syringe-pump/ | SCR_021613 | linear-actuator | 2026-08-12 10:52:40 | 0 | |||||||
|
Rodent Operant Bucket Resource Report Resource Website |
Rodent Operant Bucket (RRID:SCR_021610) | software resource, source code | Software tool as ROBucket source code. | ROBucket, OpenBehavior |
is listed by: OpenBehavior is related to: Rodent Operant Bucket project |
DOI:10.3758/s13428-015-0603-2 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/robucket/ | SCR_021610 | 2026-08-12 10:52:22 | 0 | ||||||||
|
chendoscope Resource Report Resource Website |
chendoscope (RRID:SCR_021616) | software resource, source code | Software tool as part of CHEndoscope. Acquisition software that interfaces with CHEndoscope Ximea USB camera. This code is compatible with Linux and Windows systems. | Acquisition software, CHEndoscope Ximea USB camera, OpenBehavior |
is listed by: OpenBehavior is related to: CHEndoscope |
DOI:10.1002/cpns.51 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/chendoscope/ | SCR_021616 | 2026-08-12 10:52:36 | 0 | ||||||||
|
AutoHeadFix Resource Report Resource Website |
AutoHeadFix (RRID:SCR_021617) | software resource, source code | Software Python code for automated control of behavioural apparatus and imaging for mice in home cage environment.Part of Homecage Task Training and Mesoscale Imaging system. | Automated control, behavioural apparatus, imaging for mice, home cage environment, OpenBehavior |
is listed by: OpenBehavior is related to: Homecage Task Training and Mesoscale Imaging project |
DOI:10.7554/elife.55964 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/training-mesoscale-imaging/ | SCR_021617 | 2026-08-12 10:52:22 | 0 | ||||||||
|
craniobot Resource Report Resource Website |
craniobot (RRID:SCR_021609) | software toolkit, software resource, source code | Software tool as part of Craniobot system.Generates, sends, and receives commands to communicate with the Craniobot. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: Craniobot project |
DOI:10.1038/s41598-018-37073-w | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/craniobot/ | SCR_021609 | craniobot | 2026-08-12 10:52:36 | 0 | |||||||
|
Automated Home-Cage Functional Imaging Resource Report Resource Website |
Automated Home-Cage Functional Imaging (RRID:SCR_021607) | software resource, source code | Software tool as part of Automated Home Cage Functional Imaging system. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home-Cage Functional Imaging project |
DOI:10.1038/ncomms11611 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/automated-home-cage-functional-imaging/ | SCR_021607 | 2026-08-12 10:52:40 | 0 | ||||||||
|
Scintillate Resource Report Resource Website |
Scintillate (RRID:SCR_021531) | software resource, source code | Open source graphical viewer for time series calcium imaging evaluation and pre-processing. | image acquisition, time series calcium imaging evaluation, calcium imaging, |
is listed by: OpenBehavior is related to: Scintillate project |
DOI:10.1016/j.jneumeth.2016.08.010 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/scintillate/ | SCR_021531 | 2026-08-12 10:52:21 | 0 | ||||||||
|
alpha helix coordinate frame simulation Resource Report Resource Website 1+ mentions |
alpha helix coordinate frame simulation (RRID:SCR_019320) | software resource, source code | Source code for alpha-helix simulation framework written in Matlab. Specifically tested on Talin-1 Rod Domain. | talin-1 (human), MATLAB, alpha-helix, simulation framework | is related to: MATLAB | Free, Available for download, Freely available | SCR_019320 | alpha-helix-coordinate-frame-simulation, alpha-helix coordinate frame simulation framework | 2026-08-12 10:52:25 | 1 |
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