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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Blue Collar Bioinformatics Resource Report Resource Website 1+ mentions |
Blue Collar Bioinformatics (RRID:SCR_012913) | Blue Collar Bioinformatics | data or information resource, blog, narrative resource | This blog will appeal to those dealing with the practical day to day work of biological data analysis and presentation. | is listed by: OMICtools | OMICS_01712 | SCR_012913 | 2026-08-13 09:28:48 | 1 | ||||||||||
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NEBcutter Resource Report Resource Website 100+ mentions |
NEBcutter (RRID:SCR_010664) | production service resource, data analysis service, service resource, analysis service resource | This tool will take a DNA sequence and find the large, non-overlapping open reading frames using the E.coli genetic code and the sites for all Type II and commercially available Type III restriction enzymes that cut the sequence just once. By default, only enzymes available from NEB are used, but other sets may be chosen. Just enter your sequence and submit. Further options will appear with the output. The maximum size of the input file is 1 MByte, and the maximum sequence length is 300 KBases. NEBcutter produces a variety of outputs including restriction enzyme maps, theoretical digests and links into the restriction enzyme database, REBASE (http://rebase.neb.com/rebase/rebase.html). Importantly, its table of recognition sites is updated daily from REBASE and it marks all sites that are potentially affected by DNA methylation (Dam, Dcm, etc.). Many options exist to choose the enzymes used for digestion, including all known specificities, subsets of those that are commercially available or sets of enzymes that produce compatible termini. | bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools has parent organization: New England Biolabs |
PMID:12824395 | biotools:nebcutter, nlx_71778 | https://bio.tools/nebcutter | SCR_010664 | 2026-08-13 09:28:32 | 151 | ||||||||
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Iran National Tumor Bank Resource Report Resource Website 1+ mentions |
Iran National Tumor Bank (RRID:SCR_010666) | material resource, tissue bank, biomaterial supply resource | Not yet vetted by NIF curator | nlx_73151 | SCR_010666 | 2026-08-13 09:28:20 | 1 | ||||||||||||
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TfSiteScan Resource Report Resource Website 10+ mentions |
TfSiteScan (RRID:SCR_010667) | production service resource, data analysis service, service resource, analysis service resource | The Tfsitescan tool is for promoter sequence analysis and works best with sequences of ~500 nt. Simply enter the nucleic acid sequence in one of the common sequence formats (IG, Genbank, EMBL, GCG, DNAStrider, or Fasta). | has parent organization: IFTI-Mirage | nlx_73876 | SCR_010667 | 2026-08-13 09:28:32 | 43 | |||||||||||
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Asterand Resource Report Resource Website 1+ mentions |
Asterand (RRID:SCR_010703) | Asterand | material resource, tissue bank, biomaterial supply resource | Provides human tissue for drug discovery scientists. * Human Biospecimens: Frozen & Fixed Human Tissues; Human RNA/DNA; Human Primary Cells / Cell lines; Custom Procurement; Oncology tissue, biofluid and RNA sets at special prices * Human Tissue-Based Services: Gene Expression, Molecular Pathology, Biochemical Pharmacology, Metabolism and Toxicity * Predictive Human Disease Models |
is listed by: One Mind Biospecimen Bank Listing is related to: University of Michigan Human Breast Cancer Cell Lines |
nlx_88875 | SCR_010703 | Asterand: Partners in Human Tissue Research, Asterand plc | 2026-08-13 09:28:35 | 6 | |||||||||
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ComiR Resource Report Resource Website 10+ mentions |
ComiR (RRID:SCR_013023) | ComiR | production service resource, data analysis service, service resource, analysis service resource | Data analysis service that predicts whether a given mRNA is targeted by a set of miRNAs. ComiR uses miRNA expression to improve and combine multiple miRNA targets for each of the four prediction algorithms: miRanda, PITA, TargetScan and mirSVR. The composite scores of the four algorithms are then combined using a support vector machine trained on Drosophila Ago1 IP data. | mirna, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: University of Pittsburgh; Pennsylvania; USA |
NLM ; Fondazione RiMED |
PMID:23703208 PMID:23284279 |
Acknowledgement requested | OMICS_00395, biotools:comir | https://bio.tools/comir | SCR_013023 | Combinatorial miRNA targeting, ComiR: Combinatorial miRNA target prediction tool, ComiR - Combinatorial miRNA target prediction tool | 2026-08-13 09:28:49 | 26 | ||||
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Tissue Solutions Resource Report Resource Website 1+ mentions |
Tissue Solutions (RRID:SCR_010672) | material resource, tissue bank, biomaterial supply resource | Tissue Solutions offers you a single point to access the entire range of human biological materials for all your research and development needs. This includes diseased and normal tissues in fresh, frozen and FFPE formats. Using our large network of ethical sources we find the tissues you require, to your specifications and will deliver them to your door. Our goal is to provide high quality and well characterized samples to biotech companies, the pharmaceutical community and contract research organizations worldwide. We also organize customized and prospective tissue acquisition projects and give specialized advice relating to all aspects of the acquisition process, including intellectual input on project design. We appreciate that you would rather spend your time finding new biomarkers and developing, testing and validating novel drugs to cure human disease than spend your time sourcing material to help you do your work, so let our dedicated Tissue Acquisitionists lessen your workload and become a virtual part of your team. | is listed by: One Mind Biospecimen Bank Listing | nlx_75586 | SCR_010672 | Tissue Solutions Ltd. | 2026-08-13 09:28:20 | 5 | ||||||||||
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T-REX Resource Report Resource Website 100+ mentions |
T-REX (RRID:SCR_010715) | T-REX | production service resource, data analysis service, service resource, analysis service resource | T-REX is a free, platform-independent online tool that allows for an integrated, rapid, and more robust analysis of T-RFLP data. Despite increasing popularity and improvements in terminal restriction fragment length polymorphism (T-RFLP) and other microbial community fingerprinting techniques, there are still numerous obstacles that hamper the analysis of these datasets. Many steps are required to process raw data into a format ready for analysis and interpretation. These steps can be time-intensive, error-prone, and can introduce unwanted variability into the analysis. Accordingly, we developed T-REX, free, online software for the processing and analysis of T-RFLP data. Analysis of T-RFLP data generated from a multiple-factorial study was performed with T-REX. With this software, we were able to i) label raw data with attributes related to the experimental design of the samples, ii) determine a baseline threshold for identification of true peaks over noise, iii) align terminal restriction fragments (T-RFs) in all samples (i.e., bin T-RFs), iv) construct a two-way data matrix from labeled data and process the matrix in a variety of ways, v) produce several measures of data matrix complexity, including the distribution of variance between main and interaction effects and sample heterogeneity, and vi) analyze a data matrix with the additive main effects and multiplicative interaction (AMMI) model. | has parent organization: Cornell University; New York; USA | Microsoft Corporation ; NSF DGE 0221658 |
PMID:19500385 | nlx_89468 | SCR_010715 | T-REX (T-RFLP analysis EXpedited), T-REX: Software for the processing and analysis of T-RFLP data, T-RFLP analysis EXpedited | 2026-08-13 09:28:35 | 122 | |||||||
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CoMet Resource Report Resource Website 500+ mentions |
CoMet (RRID:SCR_011925) | CoMet | production service resource, data analysis service, service resource, analysis service resource | A web-server for fast comparative functional profiling of metagenomes. | is listed by: OMICtools | OMICS_01477 | SCR_011925 | CoMet - a web-server for fast comparative functional profiling of metagenomes | 2026-08-13 09:28:38 | 991 | |||||||||
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Penn Small Animal Imaging Facility: MRI/MRS Sub-Core Resource Report Resource Website 1+ mentions |
Penn Small Animal Imaging Facility: MRI/MRS Sub-Core (RRID:SCR_010032) | core facility, service resource, access service resource | The MR Sub-Core of the SAIF provides the instrumentation and expertise necessary to perform a broad spectrum of magnetic resonance imaging and spectroscopy studies on a wide range of biological samples including small animals (cats, rabbits, rats, mice), tissue specimens, cultured cells and tissue extracts. This facility includes a conveniently located, well equipped surgery room used for preparing the animals for MR exams and a wide assortment of supporting equipment, i.e. anesthesia machines, MR compatible vital signs monitors (SA Instruments), infusion pumps (Harvard), heating pads, etc. A variety of perishable supplies used in animal preparation are provided by the facility. |
is listed by: Eagle I has parent organization: University of Pennsylvania; Philadelphia; USA |
nlx_156502 | SCR_010032 | 2026-08-13 09:28:20 | 1 | |||||||||||
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University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Vector Core Facility Resource Report Resource Website 10+ mentions |
University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Vector Core Facility (RRID:SCR_010038) | core facility, service resource, access service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 30,2023. Core whose main aim is to provide vector technology for preclinical studies and other basic research applications. Its services include rovision of AAV, adenoviral and lentiviral based vectors, consultation and advice in the design of custom vectors and in vector serotype/pseudotype selection, and design, cloning and production of plasmid DNA for the production of custom vectors. | vector core, vector design, vector consultation, gene therapy program |
is listed by: Eagle I is listed by: NIDDK Information Network (dkNET) has parent organization: University of Pennsylvania; Philadelphia; USA has parent organization: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis is organization facet of: Penn Diabetes Research Center is organization facet of: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis |
Cystic Fibrosis | NIDDK P30 DK047757 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156509 | http://www.med.upenn.edu/gtp/vectorcore/ | SCR_010038 | University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Vector Core | 2026-08-13 09:28:20 | 15 | |||||
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Penn Flow Cytometry and Cell Sorting Resource Laboratory Resource Report Resource Website 1+ mentions |
Penn Flow Cytometry and Cell Sorting Resource Laboratory (RRID:SCR_010011) | core facility, service resource, access service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1,2023. Core facility that provides the following services: Flow cytometry analysis service, Cell sorting and analysis service, Flow cytometer analyzer access, Introductory flow cytometry training, Advanced and customized flow cytometry training, Flow cytometry consultation service, FACSAria training, Flow cytometry data analysis, BSL2+ biohazardous human cell sorting, BSL2+ murine biohazardous cell sorting, BSL2+ murine cell sorting access, Non-infectious cell sorting access. The Flow Cytometry and Cell Sorting Resource Laboratory is currently recognized as one of the largest and most comprehensive flow cytometry laboratories in the US. In 2010 it was designated a laboratory of exceptional merit by the National Cancer Institute. Using state-of-the-art technology, the resource provides a broad array of, instrumentation, support, education and consultation to the research community at the University of Pennsylvania. A wide variety of cell sorting applications are supported, from high-speed multicolor (up to 14 colors) cell sorting to low-speed, large nozzle, improved viability sorting. Additionally, a wide variety of cell analysis services (up to 20 parameters) are offered, from traditional analog, easier to use tabletop analyzers to many-laser, many-color, high-speed, fully-digital modern instrumentation. Currently the facility offers 6 cell sorters and 19 analytical instruments. A very active training and consultation program is in place to support these activities. The Scientific Director, Dr. Jonni Moore, and the Technical Director, each have over 25 years experience in the field of cytomics. Researchers at the University of Pennsylvania are increasingly engaged in research projects that require 8-plus-parameter cell sorting of infectious cells and primary human tissues. Investigators using the Flow Cytometry and Cell Sorting Shared Resource have access to virtually any type of cytometric services required for a vast array of applications. | flow cytometry assay, cell separation, fluorescence activated cell sorting (facs), data analysis |
is listed by: Eagle I has parent organization: University of Pennsylvania; Philadelphia; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156478 | SCR_010011 | 2026-08-13 09:28:19 | 3 | |||||||||
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UCC Data Management and Statistical Research Support Unit Resource Report Resource Website 1+ mentions |
UCC Data Management and Statistical Research Support Unit (RRID:SCR_010074) | UCC DMSRSU | core facility, service resource, access service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 26,2026. Core facility that provides the following services: Research support, Research Training. The DMSRSU provides study design, data management, quality assurance, and statistical analysis support for UCC researchers. The DMSRSU has a strong infrastructure which includes the following subunits: Data Abstraction and Management; Data Entry; Quality Control; Data Analysis and Consultant; and Administrative and Computer Systems. Each of these subunits consists of experienced professionals readily available to assist researchers and to provide data management and statistical research support to investigators. In addition, the DMSRSU counts on a highly experienced and reliable consulting team. | data management, data analysis |
is listed by: Eagle I has parent organization: Central University of the Caribbean; Puerto Rico; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156546 | SCR_010074 | 2026-08-13 09:28:17 | 7 | ||||||||
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Wistar Proteomics and Metabolomics Core Facility Resource Report Resource Website 1+ mentions |
Wistar Proteomics and Metabolomics Core Facility (RRID:SCR_010211) | core facility, service resource, access service resource | Core facility that provides the following services: In-gel protease digestion service, LC-MS/MS protein identification service, Gel/LC-MS/MS Comprehensive analysis of a subproteome or proteome, MudPIT (LC/LC-MS/MS) analyis?comprehensive analysis of a subproteome or proteome, Reverse phase microbore HPLC peptide mapping service, MALDI mass spectrometry, ESI of intact proteins, Post-translational modification identifications, Custom proteomics database creation, Custom proteomics data analysis, Proteomics methods development. The Wistar Proteomics Facility provides mass spectrometry (MS) and sequence analysis of proteins and peptides at maximum sensitivity using state-of-the-art instruments and methods. The most commonly used services are identifications of either purified proteins or complex protein mixtures, such as sub-proteomes or complete proteomes, using electrospray ionization tandem mass spectrometry (ESI MS/MS). Typically, either individual bands are excised from 1-D SDS gels, or the entire gel lane is analyzed by slicing it into uniform fractions followed by trypsin digestion and nanocapillary HPLC interfaced directly with hybrid ion trap mass spectrometry (Gel/LC-MS/MS). Data is analyzed and filtered to produce low false-positive rates. Several options are available for quantitatively comparing protein changes in related samples, and additional options will be implemented in the future. Complementary services include reverse-phase microbore HPLC peptide mapping with UV detection and mass measurements of intact peptides and proteins using MALDI MS or ESI MS. Posttranslational modification (PTM) analyses including identifications of specific modified residues also are provided, although investigators should recognize that in most cases these studies are quite complex and require substantial effort. These studies, as well as analyses of complex protein mixtures, usually require preparation of custom sequence databases and/or custom data analyses, which can be provided by the facility as needed. | trypsination, liquid chromatography?tandem mass spectrometry, protein identification, mass spectrometry data analysis, protein expression profiling, ion chromatography, high performance liquid chromatography, post translational modification identification by mass spectrometry, matrix-assisted laser desorption ionization time-of-flight mass spectrometry, electrospray ionization mass spectrometry, data analysis |
is listed by: Eagle I is listed by: ABRF CoreMarketplace has parent organization: Wistar Institute |
nlx_156689, ABRF_2804 | https://coremarketplace.org/?FacilityID=2804&citation=1 | http://eagle-i.itmat.upenn.edu/i/0000013f-67e1-2fdc-a468-831a80000000 | SCR_010211 | Wistar Proteomics Facility | 2026-08-13 09:28:27 | 3 | |||||||
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UPR RCMI Program Shared Instrumentation Laboratories Resource Report Resource Website 1+ mentions |
UPR RCMI Program Shared Instrumentation Laboratories (RRID:SCR_010132) | core facility, service resource, access service resource | These laboratories house large, relatively expensive research instruments, which are shared among the faculty, students and staff on campus. |
is listed by: Eagle I has parent organization: University of Puerto Rico; Puerto Rico; USA |
nlx_156610 | SCR_010132 | 2026-08-13 09:28:19 | 4 | |||||||||||
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Indiana University School of Medicine Histology Core Facility Resource Report Resource Website 1+ mentions |
Indiana University School of Medicine Histology Core Facility (RRID:SCR_011020) | IUSM Histology Core Facility, IUSM Histology Core | core facility, service resource, access service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 30,2024. The Histology Core of the Department of Anatomy and Cell Biology at the Indiana University School of Medicine provides histological services for basic science (non-clinical) research. Both mineralized (plastic embedded) and soft tissue (paraffin embedded) specimens can be prepared. |
is listed by: ScienceExchange is related to: Indiana University Labs and Facilities has parent organization: Indiana University School of Medicine; Indiana; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_9460 | SCR_011020 | Indiana University School of Medicine Department of Anatomy and Cell Biology Histology Core Facility, Indiana University School of Medicine Department of Anatomy and Cell Biology Histology Core | 2026-08-13 09:28:23 | 1 | ||||||||
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Dartmouth Genomics and Microarray Laboratory Resource Report Resource Website 1+ mentions |
Dartmouth Genomics and Microarray Laboratory (RRID:SCR_012190) | DGML | core facility, service resource, access service resource | The Genomics and Microarray Laboratory (DGML) is supported by the Norris Cotton Cancer Center. DGML is a core facility for investigators at Dartmouth College and Dartmouth Hitchcock Medical Center to provide genomics products and services at or below cost. |
is listed by: ScienceExchange has parent organization: Dartmouth College; New Hampshire; USA |
SciEx_10313 | SCR_012190 | Dartmouth College Geisel School of Medicine Genomics and Microarray Laboratory | 2026-08-13 09:28:28 | 1 | |||||||||
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Tulane University; Louisiana; USA Resource Report Resource Website 1+ mentions |
Tulane University; Louisiana; USA (RRID:SCR_011548) | university | Tulane University of Louisiana is a private research university in New Orleans, Louisiana, United States. Founded as the Medical College of Louisiana in 1834 by a cohort of medical doctors, it became a comprehensive public university in the University of Louisiana in 1847 |
is parent organization of: T4-like genome database is parent organization of: Tulane National Biomedical Research Center is parent organization of: Tulane University School of Medicine; Louisiana; USA is parent organization of: Research Network in Early Experience and Brain Development is parent organization of: Deep Collaborative Learning is parent organization of: Tulane University TNBRC Anatomic Pathology Core Facility is parent organization of: Tulane University TNBRC Immunology Assay Core Facility is parent organization of: Tulane University TNBRC Infectious Disease Aerobiology Core Facility is parent organization of: Tulane University TNBRC Clinical Pathology Core Facility is parent organization of: Tulane University TNBRC Unit of Collaborative Research Core Facility is parent organization of: Tulane University TNBRC Flow Cytometry Core Facility is parent organization of: Tulane University TNBRC High Containment Research Performance Core Facility is parent organization of: Tulane University TNBRC Confocal Microscopy and Molecular Pathology Core Facility is parent organization of: Tulane University TNPRC Pathogen Detection and Quantification Core Facility is parent organization of: Tulane University TNBRC Genetics and Genome Banking Core Facility is parent organization of: Tulane University TNBRC Vector Borne Infectious Disease and Diagnostic Parasitology Core Facility is parent organization of: Tulane University TNPRC Virus Characterization, Isolation, Production and Sequencing Core Facility is parent organization of: Tulane University TNBRC Animal Resources is parent organization of: Tulane University TNBRC Molecular Virology and Sequencing Core Facility is parent organization of: Tulane University School of Medicine Flow Cytometry and Cell Sorting Core Facility is parent organization of: Tulane University School of Medicine CTRII NextGen Sequencing Core Facility is parent organization of: Tulane University Sex-Based Precision Medicine Research Core Facility |
, GRID grid.265219.b, ISNI 0000 0001 2217 8588, Crossref Funder ID 100007875, Wikidata Q1193547 | https://ror.org/04vmvtb21 | SCR_011548 | 2026-08-13 09:28:39 | 6 | ||||||||||
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University of Utah Flow Cytometry Core Facility Resource Report Resource Website 1+ mentions |
University of Utah Flow Cytometry Core Facility (RRID:SCR_012210) | UUtah Flow Cytometry Core Facility | core facility, service resource, access service resource | Serving 120+ investigators with a 5 laser high speed sorter and 3 benchtop analyzers with 13+ color capabilities, the Utah Flow Cytometry Core Facility has developed a paradigm to balance productivity with quality to minimize the cost per research project, keep overall costs contained, and provide the necessary scientific support. Central to this paradigm is a close working relationship with investigators to define their projects in the early stages of development to make optimal and efficient use of flow cytometry. In addition to high quality and well maintained instrumentation, success of this approach requires focused efforts in three major areas: 1) education of ALL users (faculty and staff) in the science and technology of flow cytometry, 2) active involvement in the scientific development of the project, 3) continuing education for core staff. |
is listed by: ScienceExchange is related to: University of Utah Labs and Facilities has parent organization: University of Utah; Utah; USA |
SciEx_10681 | SCR_012210 | Utah Flow Cytometry Core Facility | 2026-08-13 09:28:44 | 1 | |||||||||
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MQ BioFocus Research Centre Resource Report Resource Website 1+ mentions |
MQ BioFocus Research Centre (RRID:SCR_011072) | MQ BioFocus Research Centre | core facility, service resource, access service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2024. We develop and apply new analytical, microscopic, molecular, multiplexed, cellular, tomographic and related technologies for biomedical diagnosis, suitable for live cells or tissues or whole body. These will enable significantly increased sensitivity, resolution, speed, accuracy, penetration, and photostability , combined with reduced toxicity and risks to health. |
is listed by: ScienceExchange is related to: Macquarie University Labs and Facilities has parent organization: Macquarie University; Sydney; Australia |
THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_9976 | SCR_011072 | Macquarie University BioFocus Research Centre, Macquarie BioFocus Research Centre | 2026-08-13 09:28:37 | 4 |
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