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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Genetic Alliance Biobank Resource Report Resource Website 1+ mentions |
Genetic Alliance Biobank (RRID:SCR_010625) | Genetic Alliance Registry and BioBank | material resource, tissue bank, biomaterial supply resource | Genetic Alliance Registry and BioBank is a centralized, clinical data registry and sample repository (including DNA, serum, cells and tissues) that enables translational research. It is a nonprofit organization established by seven patient advocacy organizations. These organizations share resources for their BioBanks, such as the contract to the independent lab that processes the samples, but each organization will maintain ownership, control and costs associated with their sample collection. Founded in 2003, this cooperative venture provides shared infrastructure and customized solutions for disease advocacy organizations to lead sophisticated research initiatives. Genetic Alliance Registry and BioBank is an advocacy owned repository for biological samples and clinical data. It provides: * Centralized, standardized collection and archiving * Highest biorepository and participant protection standards * Open access for all organization approved researchers * Advocacy organization control | genetics |
is listed by: One Mind Biospecimen Bank Listing is related to: CFC International is related to: PXE International Registry and BioBank is parent organization of: National Psoriasis BioBank |
nlx_56978 | SCR_010625 | Genetic Alliance Registry & BioBank | 2026-08-13 09:28:19 | 2 | ||||||||
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CRAVAT Resource Report Resource Website 10+ mentions |
CRAVAT (RRID:SCR_012776) | CRAVAT | production service resource, data analysis service, service resource, analysis service resource | A web-based application designed with an easy-to-use interface to facilitate the high-throughput assessment and prioritization of genes and missense alterations important for cancer tumorigenesis. |
is listed by: OMICtools has parent organization: Johns Hopkins University; Maryland; USA |
Cancer | NCI CA 152432; NSF DBI 0845275; NCI 1U01CA180956-01 |
OMICS_00147 | SCR_012776 | cancer-related analysis of variants toolkit | 2026-08-13 09:28:42 | 30 | |||||||
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Radiometer Resource Report Resource Website 10+ mentions |
Radiometer (RRID:SCR_014772) | production service resource, service resource, material service resource | Commercial organizations which develops, manufactures, and sells solutions and equipment for blood sampling, blood gas analysis, transcutaneous monitoring, and IT management systems under certain brand names. | commercial, blood sampling, blood gas analysis, transcutaneous monitoring, it management | Commercially available | SCR_014772 | 2026-08-13 09:29:05 | 28 | |||||||||||
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SIFT 4G Resource Report Resource Website 1+ mentions |
SIFT 4G (RRID:SCR_021850) | production service resource, data analysis service, service resource, analysis service resource | Software tool to predict whether amino acid substitution affects protein function. Faster version of SIFT that enables to scale up and provide SIFT predictions for more organisms. | sequence homology, amino acids physical properties, amino acid substitution, protein function | is related to: SIFT | Free, Available for download, Freely available | https://github.com/rvaser/sift4g | SCR_021850 | Sorting Intolerant From Tolerant For Genomes, SIFT4G | 2026-08-13 09:30:46 | 4 | ||||||||
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Zeitz Resource Report Resource Website 100+ mentions |
Zeitz (RRID:SCR_014774) | production service resource, service resource, material service resource | Manufacturer and supplier of the DMZ Universal electrode pullers which produce pipettes and electrodes with a tip diameter down to 0.2 micrometers. | electrode, electrode puller, material service resource, manufacturer, supplier, pipette | Commercially available | SCR_014774 | Zeitz Instruments, Zeitz-Instruments | 2026-08-13 09:29:14 | 114 | ||||||||||
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IMACEL Resource Report Resource Website 1+ mentions |
IMACEL (RRID:SCR_015868) | production service resource, data analysis service, service resource, analysis service resource | Artificial intelligence image analysis platform that facilitates life science research. It offers data analysis, processing functions, and security features to accelerate research productivity. | ai, artificial intelligence, research, biological research, life science, image analysis, data analysis, data processing, data security | Free trial available, Commercially available, Account required | SCR_015868 | 2026-08-13 09:29:29 | 2 | |||||||||||
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protein hydrophilicity analysis tool Resource Report Resource Website 1+ mentions |
protein hydrophilicity analysis tool (RRID:SCR_023015) | production service resource, service resource, analysis service resource | Web protein hydrophilicity analysis tool. | protein hydrophilicity analysis | Free, Freely available | SCR_023015 | 2026-08-13 09:30:41 | 3 | |||||||||||
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Collaborative Research Network Cloud Resource Report Resource Website 1+ mentions |
Collaborative Research Network Cloud (RRID:SCR_023923) | CRN Cloud | data or information resource, organization portal, portal | MJFF in partnership with Aligning Science Across Parkinson’s are in the process of establishing data platform, CRN Cloud, leveraging Verily Workbench to share data generated by researcher labs funded through ASAP Collaborative Research Network. The data types include mainly raw and processed single cell RNA-seq, single nucleus RNA-seq, and bulk RNA-seq from both PD and healthy control samples. | raw and processed single cell RNA-seq, single nucleus RNA-seq, bulk RNA-seq, PD and healthy control samples, | ASAP Collaborative Research Network | Free, Freely available | SCR_023923 | 2026-08-13 09:30:51 | 2 | |||||||||
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Predomics Resource Report Resource Website 1+ mentions |
Predomics (RRID:SCR_017415) | software resource, source code, software application | Software package for metagenomics data. Discovers accurate predictive signatures and provides unprecedented interpretability. Package contains three methods for suppervised learning based on ternary coefficients. Used to discover classification models for quantitative metagenomics data. | Metagenomic, data, discover, predictive, signature, unprecedented, interpretability, supervised, learning, ternary, coefficient | EU-FP7 HEALTH-F4-2012-305312; Assistance Publique-Hôpitaux de Paris Contrat d’interface chercheurs 2015-2018; French National Agency |
DOI:10.1101/409144 | Free, Available for download, Freely available | SCR_017415 | 2026-08-13 09:29:43 | 1 | |||||||||
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ENA Sequence Search Resource Report Resource Website 1+ mentions |
ENA Sequence Search (RRID:SCR_013170) | ENA Sequence Search | production service resource, data analysis service, service resource, analysis service resource | A nucleotide sequence similiary search tool which is far faster than BLAST for large datasets, with only a marginal loss in search sensitivity. | nucleotide sequencing |
is listed by: OMICtools has parent organization: European Nucleotide Archive (ENA) |
OMICS_00993 | SCR_013170 | 2026-08-13 09:28:46 | 7 | |||||||||
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SomaDetection Resource Report Resource Website 1+ mentions |
SomaDetection (RRID:SCR_015717) | software resource, source code, algorithm resource | Source code for a machine learning method to detect somas on confocal microscopic images of the Drosophila brain. The method can be applied to the original raw images where the noises are not removed and the number of somas is unknown. | soma detection, drosophilia, confocal microscopic image, machine learning, algorithm, c++ | DOI:10.1007/s12021-017-9342-0 | Free, Available for download | SCR_015717 | Soma Detection | 2026-08-13 09:29:29 | 1 | |||||||||
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NBRP Medaka CRISPR target site Resource Report Resource Website 1+ mentions |
NBRP Medaka CRISPR target site (RRID:SCR_018159) | production service resource, service resource, analysis service resource | Web tool to show micro homology sequences striding over double strand break point created by CRISPR/Cas9 system. Used to search for CRISPR target site with micro-homology sequences. Used to predict deletion pattern. | Micro homology sequence, double strand break point, CRISPR/Cas9 system, predict deletion pattern, sequence, mutation, target gene | Free, Freely available | SCR_018159 | 2026-08-13 09:30:17 | 3 | |||||||||||
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T2DiACoD Resource Report Resource Website 1+ mentions |
T2DiACoD (RRID:SCR_019092) | data or information resource, database, atlas | Gene atlas of Type 2 Diabetes Mellitus associated complex disorders. Provides curated and integrated information about genes involved in development and progression of Type 2 Diabetes Mellitus, genes and pathways with evidence for role in diabetes under risk factors including obesity, diet, inflammation, stress and complex disorders that are associated with Type 2 Diabetes Mellitus including atherosclerosis, diabetic retinopathy, diabetic nephropathy, diabetic neuropathy, cardiovascular disease. | T2DM gene data, diabeties pathway, gene atlas, T2DM associated complex disorder data | Type 2 Diabetes Mellitus, T2DM | PMID:28761062 | Free, Freely available | SCR_019092 | Type 2 Diabetes Mellitus Associated Complex Disorders | 2026-08-13 09:30:35 | 4 | ||||||||
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Drosphila Brain Lineage Atlas Resource Report Resource Website 1+ mentions |
Drosphila Brain Lineage Atlas (RRID:SCR_017507) | data or information resource, service resource, atlas | Atlas providing structure and development of Drosophila brain lineages. Used to learn about projection pattern of lineages as first step towards reconstructing and understanding all neurons. | Structure, development, Drosophila, brain, lineage, neuron, brain | has parent organization: University of California at Los Angeles; California; USA | Free, Freely available | SCR_017507 | 2026-08-13 09:30:03 | 1 | ||||||||||
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CIS-BP Resource Report Resource Website 100+ mentions |
CIS-BP (RRID:SCR_017236) | data or information resource, data access protocol, database, web service, software resource | Software tool as catalog of inferred sequence binding preferences. Online library of transcription factors and their DNA binding motifs. | catalog, inferred, sequence, binding, preference, transcription, factor, DNA, motif, FASEB list | Canadian Institutes of Health Research ; Canadian Institute for Advanced Research Junior Fellows Genetic Networks Program ; NICHD P01 HD39691; NIGMS GM082971; EU Marie Curie International Outgoing Fellowship ; NSF MCB-1024999; Howard Hughes Medical Institute ; Gordon and Betty Moore Foundation ; Millennium Nucleus for Fungal Integrative and Synthetic Biology ; Fondo Nacional de Desarrollo Científico y Tecnológico |
PMID:25215497 | Free, Freely available | r3d100013971 | https://doi.org/10.17616/R31NJN9V | SCR_017236 | Catalog of Inferred Sequence Binding Preferences | 2026-08-13 09:29:39 | 115 | ||||||
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FASTGenomics Resource Report Resource Website 1+ mentions |
FASTGenomics (RRID:SCR_022898) | production service resource, data analysis service, service resource, analysis service resource | Open online platform for single cell RNA-seq. Provides data management and analytics. Used to analyze public and private datasets and you can choose between several best practices workflows and browse existing analyses. | single cell RNA-seq, data management, data analytics, analyze public and private datasets, best practices workflows | German Federal Ministry of Economic Affairs and Energy | Free, Freely available | https://github.com/FASTGenomics | SCR_022898 | 2026-08-13 09:30:58 | 9 | |||||||||
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Estimation Stats Resource Report Resource Website 10+ mentions |
Estimation Stats (RRID:SCR_018321) | production service resource, service resource, analysis service resource | Web application for data analysis and visualizing effect sizes. Data analysis with estimation graphics. | Data analysis, estimation graphics, visualizing effect sizes | PMID:31217592 | Free, Freely available | SCR_018321 | Estimation Statistics | 2026-08-13 09:30:12 | 34 | |||||||||
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SRMAtlas Resource Report Resource Website 1+ mentions |
SRMAtlas (RRID:SCR_016996) | SRM Atlas, SRMatlas | data or information resource, database, atlas | Resource of targeted proteomics assays to detect and quantify proteins in complex proteome digests by mass spectrometry. Used to quantify the complete human proteome. | collection, proteomic, assay, detect, quantify, protein, mass, spectrometry, peptide | American Recovery and Reinvestment Act ; NHGRI RC2 HG005805; NIGMS R01 GM087221; NCRR S10 RR027584; NIGMS P50 GM076547; Luxembourg Centre for Systems Biomedicine University Luxembourg ; European Research Council ; Swiss National Science Foundation |
PMID:27453469 | Publicly available, Registration required | SCR_016996 | 2026-08-13 09:29:51 | 3 | ||||||||
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Phi Toolbox Resource Report Resource Website 1+ mentions |
Phi Toolbox (RRID:SCR_015549) | software toolkit, software resource, source code | Toolkit of MATLAB functions for computing integrated information ('phi' or 'Φ') from neural data. The toolbox consists of downloadable codes that perform practical computation. | matlab, integrated information, phi, Φ, neural data, computation | PMID:26796119 PMID:27930289 |
Open Source, Available for download | SCR_015549 | Φ toolbox, phi toolkit, integrated information matlab toolbox | 2026-08-13 09:29:15 | 1 | |||||||||
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Kidney Interactive Transcriptomics Resource Report Resource Website 50+ mentions |
Kidney Interactive Transcriptomics (RRID:SCR_017209) | KIT | production service resource, service resource, data or information resource, analysis service resource | Software tool as analyzer for kidney single cell datasets. Allows users to query gene expression from mouse or human kidney and human kidney organoid single cell datasets. For details about datasets visit ReBuilding a Kidney website. | Analyzer, kidney, single, cell, dataset, gene, expression, mouse, human, organoid | Free, Freely available | https://www.rebuildingakidney.org/ | SCR_017209 | 2026-08-13 09:29:39 | 99 |
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