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http://sig.biostr.washington.edu/projects/fm/FME/index.html

The Foundational Model Explorer (FME) is an internet based software application developed for viewing the content and organization of the Foundational Model of Anatomy Ontology (FMA). The initial purpose of the FME was to provide a simple and intuitive interface to the FMA for domain experts, in the field of anatomy, participating in the evaluation of the FMA. The FME also provides an easily available method of exploring the FMA to individuals or groups considering the adoption of the Foundational Model of Anatomy knowledge base. The FME display consists of two panes: a hierarchical tree may be opened up in the pane on the left side; if a class is selected in the hierarchical tree, the pane on the right side displays the information that has been entered in the FMA for that class. The information associated with a given class is organized in so-called slots. Each slot has a name (e.g., Definition, Parts) and some content, which is that particular slots value (e.g., the English definition and the names of parts of the selected class, respectively). For an explanation of the interactive features of the FME, see the Knowledge Navigation Section. For a guided tutorial check out the Conducted Tour. In the left pane, the default tree is a subclass hierarchy, based on the -is a- or -kind of- relationship; it is the instantiation of the Anatomy taxonomy (At) component in the high level scheme of the Foundational Model of Anatomy. Apart from the slots Preferred Name and Synonyms, other slots relate to the Anatomical Structural Abstraction (ASA) component in the FMAs high level scheme. Hierarchies based on various part-whole relationships can also be opened up in the left pane. Once a class has been highlighted in the subclass hierarchy, you can choose a relationship from a drop down list labeled Select navigation tree type. Some other transitive relationships (e.g., -branch of- and -tributary of-) are also available. The Search facility matches a search term to the preferred name, as well as to the Latin name, or synonym of an FMA class (if such exist). The tree is expanded to reveal the matching class and the information about this class is displayed. The wildcard * is allowed in the search term and will match to any sequence of characters. For example the search term h*d matches the class names Head and Hepatic cord (amongst others). The search function is not case sensitive. If more than one class name matches with the search term, a list of matching terms is presented for the user to choose between.

Proper citation: Foundational Model Explorer (RRID:SCR_008189) Copy   

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http://sklad.cumc.columbia.edu/gsas/

The Columbia University Medical Center is home to over 2,000 basic and clinical faculty and 3,000 students. In addition to the graduate school, this intellectual powerhouse incorporates schools of medicine, dentistry, nursing and public health. The campus also includes the New York Presbyterian Hospital, ranked within the top 10 in the nation. Columbia''s diverse academic resources, as well as its proximity to other scientific institutions offers endless opportunities to attend data clubs, lectures and symposia as well as to pursue research collaborations or learn new techniques. We offer a range of nationally top-ranked Ph.D. Programs grouped in five divisions. Regardless of program affiliation, students have access to all training faculty when selecting their research direction, ensuring that each student receives optimal training and research experience.

Proper citation: Graduate School of Arts and Sciences at Columbia University Medical Center (RRID:SCR_011258) Copy   

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http://opal.biology.gatech.edu/GeneMark/

A family of gene prediction programs developed at Georgia Institute of Technology.

Proper citation: GeneMark (RRID:SCR_011930) Copy   

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http://www.scienceexchange.com/facilities/purdue-university

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 24,2024. Portal, Core facility

Proper citation: Purdue University Labs and Facilities (RRID:SCR_012231) Copy   

•   Source: SciCrunch Registry

http://fgcz-bfabric.uzh.ch/bfabric/

An open infrastructure for managing projects and data in life sciences that allows to store and access experimental data together with its scientific context. The platform connects the data from scientific instruments with data analysis tools, including workflow, annotation, and data visualization support. All public data can be searched and used to carry out inter-experiment analyses. For a fee, B-Fabric Order allows you to order the following analytical services at the FGCZ independent of a User Lab research project: Mass spectrometry, Protein sequencing, peptide sequencing, Amino acid analysis, Chromatography, Electrophoresis.

Proper citation: B-Fabric (RRID:SCR_011827) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/oyagen-inc

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on December 6,2022. OYAGEN is a biotechnology company formed on September 5, 2003, for the purpose of discovering, developing, and commercializing novel pharmaceutical therapies that seek to exploit RNA editing and DNA editing enzymes. OyaGen holds exclusive rights to important technologies originating from the University of Rochester Medical Center (URMC), the Thomas Jefferson University (TJU), and Oregon Health Science Center.

Proper citation: OyaGen (RRID:SCR_012236) Copy   

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http://www-new.onu.edu/academics/pharmacy

Founded 1884, the Ohio Northern University''s College of Pharmacy has had the privilege to graduate over 7,000 pharmacists during its 125-year history. The R. H. Raabe College of Pharmacy is distinctive among other colleges of pharmacy as it integrates a comprehensive foundation in the pharmaceutical sciences and the practice of pharmacy along with a strong liberal arts curriculum. Our graduates are particularly active in local, state, and national health-related organizations. The College is committed to assuring that all students receive the finest education possible. Our faculty members are dedicated scholars with a desire to assist student learning. Our outstanding clinical facilities and preceptors illustrate the application of knowledge to actual therapeutic decisions. The Doctor of Pharmacy program is designed to provide the student with the preparation and background for a successful career in a vital health profession.

Proper citation: Ohio Northern University College of Pharmacy (RRID:SCR_011428) Copy   

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http://www.scienceexchange.com/facilities/medros-inc

An Core facility

Proper citation: Medros (RRID:SCR_012400) Copy   

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http://cbcb.umd.edu/software/metAMOS

A modular and open source metagenomic assembly and analysis pipeline.

Proper citation: MetAMOS (RRID:SCR_011914) Copy   

•   Source: SciCrunch Registry

http://antibodies.cancer.gov/apps/site/default

Serves as a gateway that provides visible access to a large number of reagents and accompanying characterization data to the research and industrial community.

Proper citation: Antibody Portal (RRID:SCR_011995) Copy   

•   Source: SciCrunch Registry

http://compbio.med.harvard.edu/antibodies/

The aim of this site is to collect and to share experimental results on antibodies that would otherwise remain in laboratories, thus aiding researchers in selection and validation of antibodies.

Proper citation: Antibody Validation Database (RRID:SCR_011996) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/boston-university

An Portal, Core facility

Proper citation: Boston University Labs and Facilities (RRID:SCR_012335) Copy   

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http://www.scienceexchange.com/facilities/university-of-virginia

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 15,2024. Portal, Core facility

Proper citation: University of Virginia Labs and Facilities (RRID:SCR_012339) Copy   

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http://www.scienceexchange.com/facilities/university-of-connecticut--2

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 16,2024. Portal, Core facility

Proper citation: University of Connecticut Labs and Facilities (RRID:SCR_012220) Copy   

•   Source: SciCrunch Registry

http://www.most.gov.cn/eng/programmes1/200610/t20061009_36223.htm

A Chinese-based national program for furthering basic scientific research. The program has three main aims, which include: supporting research on issues concerning national socioeconnomic development, creating a highly-skilled cohort of scientists, and improving program management to encourage innovation.

Proper citation: 973 Program (RRID:SCR_011494) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/dartmouth-college

An Portal, Core facility

Proper citation: Dartmouth College Labs and Facilities (RRID:SCR_012343) Copy   

•   Source: SciCrunch Registry

http://kissplice.prabi.fr/

Software tool that enables analysis of RNA-seq data with or without reference genome. Local transcriptome assembler for SNPs, indels and AS events.

Proper citation: KisSplice (RRID:SCR_011893) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/bioseek

BioSeek is a drug discovery services company that applies human primary cell assays and predictive disease models to the discovery and development of human therapeutics and safer chemicals. BioSeek improves the success rate of drug discovery and development by integrating human biology from the earliest stages of drug discovery onward through its unique BioMAP??????? platform. Our mission is to accelerate drug compound validation and enable our clients to take safer and more effective products into the market.

Proper citation: BioSeek (RRID:SCR_012224) Copy   

•   Source: SciCrunch Registry

http://uc-echo.sourceforge.net/

Error correction algorithm designed for short-reads from next-generation sequencing platforms such as Illumina''s Genome Analyzer II.

Proper citation: ECHO (RRID:SCR_011851) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/biosciences-and-proteomics-technologies-uts

THIS RESOURCE IS NO LONGER IN SERVCE, documented January 25, 2019. Core brings together leading technologies for sample preparation, protein separations, identification and characterization. Through collaboration with the Computational Research Support Unit, Biosciences and Proteomics Technologies is developing new systems for electronic laboratory information management and bioinformatics. The research facility offers services and training in proteomics discovery technologies to Australian and international researchers from academia and industry. Core has expertise in experimental design, custom method development, sample preparation, complex mixture fractionation and protein separations. Sydney Biosciences and Proteomics Technologies also manages the core infrastructure and operations for the Faculty of Science's extensive Biomedical and Bioscience research facilities.

Proper citation: University of Technology at Sydney Biosciences and Proteomics Technologies (RRID:SCR_012269) Copy   

•   Source: SciCrunch Registry