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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://www.aplysia.earth.miami.edu/
Center where Aplysia californica are cultured and raised for research purposes. Aplysia from the facility serve in research on genomics, human brain function, toxicology for developmental studies, natural products, chemistry for isolation of novel anti-tumor and antibacterial compounds, in the study of transport by digestive tissues and have potential for use in studies of substance addiction and nerve senescence and regeneration.
Proper citation: National Resource for Aplysia (RRID:SCR_008361) Copy
http://www.pstnet.com/software.cfm?ID=96
Designed for use in an MRI simulator, MoTrak software uses Ascension Technology?s Flock of Birds. The sensor attaches to the subject?s head and determines the position of the head in space relative to the transmitter. The sensor records angular rotations as well as positional displacements from an initially calibrated position. This information is displayed and logged by the program in real-time, allowing observation of head motion in an MRI simulator. In the simulator, the participant can simultaneously be habituated to the MRI environment, while being trained to remain still via feedback from the MoTrak system.
Proper citation: MoTrak Head Motion Tracking System (RRID:SCR_009607) Copy
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 15,2025. Human protein knowledge platform. Knowledge platform for human proteins selects and filters high throughput data pertinent to human proteins from UniProtKB. Extends UniProtKB/Swiss-Prot annotations for human proteins to include several new data types.
Proper citation: neXtProt (RRID:SCR_008911) Copy
Families of Spinal Muscular Atrophy is dedicated to creating a treatment and cure by: - Funding and advancing a comprehensive research program; - Supporting SMA families through networking, information and services; - Improving care for all SMA patients; - Educating health professionals and the public about SMA; - Enlisting government support for SMA; - Embracing all touched by SMA in a caring community. Our vision is a world where Spinal Muscular Atrophy is treatable and curable.
Proper citation: Families of SMA (RRID:SCR_010618) Copy
http://www.nitrc.org/projects/bnv/
Aa brain network visualization tool, which can help researchers to visualize structural and functional connectivity patterns from different levels in a quick, easy, and flexible way.
Proper citation: BrainNet Viewer (RRID:SCR_009446) Copy
http://services.ceon.pl/cermine/index.html
Java library and a web service for extracting metadata and content from scientific articles in born-digital form. The system analyses the entire content of a PDF file containing a publication and attempts to extract information such as: the title of the article, journal information (title, etc.), bibliographic information (volume, issue, page numbers, etc.), authors and affiliations, keywords, abstract, bibliographic references and structured sections hierarchy.
Proper citation: CERMINE (RRID:SCR_008993) Copy
http://purl.bioontology.org/ontology/EHDA
A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The timed version of the human developmental anatomy ontology gives all the tissues present at each Carnegie Stage (CS) of human development (1-20) linked by a part-of rule. Each term is mentioned only once so that the embryo at each stage can be seen as the simple sum of its parts. Users should note that tissues that are symmetric (e.g. eyes, ears, limbs) are only mentioned once.
Proper citation: Human Developmental Anatomy Ontology timed version (RRID:SCR_010338) Copy
Makes DNA sequencing services, Real Time PCR access and custom DNA products available to scientists. It provides automated fluorescent sequencing and oligonucleotides to the Hopkins Community. Using the JHU Finch Server facility staff capture orders, to distribute and store data indefinitely. Data produced using the Applied Biosystems 3730xl DNA Analyzer is then made available for download, for online or offline viewing, and for editing through the conveniences of the web-based JHU Finch Server. The facility also offers oligonucleotides through Sigma-Genosys.
Proper citation: Genetic Resources Core Facility (RRID:SCR_010581) Copy
http://purl.bioontology.org/ontology/HUPSON
Ontology as a basis for shared semantics and interoperability of simulations, of models, of algorithms and of other resources in this domain. The ontology is based on the Basic Formal Ontology, and adheres to the MIREOT principles.
Proper citation: Human Physiology Simulation Ontology (RRID:SCR_010340) Copy
http://purl.bioontology.org/ontology/LOINC
Ontology of logical observation identifier names and codes (LOINC); Version 2.26; January 2, 2009
Proper citation: Logical Observation Identifier Names and Codes (RRID:SCR_010341) Copy
https://genomecenter.ucdavis.edu/core-facilities/
Genome Center uses technologies to understand how heritable genetic information of diverse organisms functions in health and disease. Provides research facilities, service cores, and staff for genomics research and training. Core facilities for Bioinformatics,DNA Technologies and Expression Analysis, Metabolomics, Proteomics,TILLING Core,Yeast One Hybrid Services Core.
Proper citation: UC Davis Genome Center Labs and Facilities (RRID:SCR_012480) Copy
http://www.scienceexchange.com/facilities/aptagen
Supplier of aptamers, RNA or DNA that binds with high affinity and specificity to targets such as small organics, peptides, proteins, cells, and tissues. Unlike antibodies, some aptamers exhibit stereoselectivity. In addition, aptamers have been generated that exhibit greater than 10,000-fold binding affinity for theophylline over caffeine, which differ from one another in structure by only a single methyl group.
Proper citation: Aptagen (RRID:SCR_012607) Copy
BioLayout Express3D is a powerful new tool for the visualization and analysis of networks derived from biological systems. Network-based approaches are becoming increasing popular for the analysis of ''omics and other high dimensional data. Networks can be produced from a wide variety of biological relationships, such as interactions between individuals, disease transmission, sequence similarity, metabolic pathways, protein interactions, pathways, regulatory cascades, gene expression, etc. BioLayout Express3D has been specifically designed for visualization, clustering and analysis of large network graphs in two- and three-dimensional space derived primarily, but not exclusively, from biological data. Sponsors: This resource is supported by BBSRC (BB / F003722 / 1) and the Wellcome Trust (GR077040RP). Keywords: Biology, Tool, Software, visualization, Analysis, Network, Biological, System, Dimentional, Data, Disease, Transmission, Sequence, Metabolic, Pathway, Protein, Interaction, Gene, Expression, Clustering, Analysis,
Proper citation: BioLayout Express 3D (RRID:SCR_007179) Copy
http://purl.bioontology.org/ontology/DCM
DICOM Controlled Terminology (PS3.16 2013 Annex D)
Proper citation: DICOM Controlled Terminology (RRID:SCR_010302) Copy
http://www.scienceexchange.com/facilities/university-of-north-carolina-at-chapel-hill
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 16,2024. Portal, Core facility.
Proper citation: University of North Carolina at Chapel Hill Labs and Facilities (RRID:SCR_012447) Copy
http://purl.bioontology.org/ontology/DIAGONT
A computational diagnostic ontology containing 91 elements, including classes and sub-classes, which are required to conduct SR-MA (Systematic Review - Meta Analysis) for diagnostic studies, that will assist in standardized reporting of diagnostic articles. They also report high percentage of agreement among five observers as a result of the inter-observer agreement that they conducted among them to tag 13 articles using the diagnostic ontology. Moreover, they extend their existing repository CERR-N (Center of Excellence in Research Reporting in Neurosurgery) to include diagnostic studies.
Proper citation: Diagnostic Ontology (RRID:SCR_010307) Copy
Chem Service, Inc. offers the convenience, cost savings and reliability of 1,000 Certified Standards Grade Organic Chemicals at your fingertips with our Organic Mini Stockroom Kit. Whether your lab is big or small, disposal fees are a concern. The Organic Mini-stockroom offers you the ability to have 1000 different chemicals at quantities ranging from 100mg to 10gm; thus, reducing disposal costs. Over 95% of their neat Standards Grade materials have a purity of 98.0% or greater, and have been analyzed by three or more (where feasible) independent methods of analysis. These do not require purity corrections when preparing a solution for use with EPA methods. Their more than 13,000 organic and inorganic standards, and solutions, support EPA Methods, ASTM Methods, State UST Methods, Air monitoring Methods, and International Methods. They offer explosive residue standards, PCB congeners, petroleum hydrocarbon standards for the petrochemical industry, pesticide standards, FAME, and vitamin standards for food analysis. Suited for identification of unknowns, product screening, optimal chemical selection and small scale chemical reactions, the O-1000A Organic Ministockroom Kit was designed for laboratories with broad chemical classification and indentification needs. Chem Service, Inc. is registered by ABS Quality Evaluations, Inc., to the internationally recognized requirements of ISO 9001 for design, development, production, distribution and servicing of organic neat and synthetic reference materials.
Proper citation: Chem Service, Inc. (RRID:SCR_008380) Copy
http://harvester.fzk.de/harvester/
Harvester is a Web-based tool that bulk-collects bioinformatic data on human proteins from various databases and prediction servers. It is a meta search engine for gene and protein information. It searches 16 major databases and prediction servers and combines the results on pregenerated HTML pages. In this way Harvester can provide comprehensive gene-protein information from different servers in a convenient and fast manner. As full text meta search engine, similar to Google trade mark, Harvester allows screening of the whole genome proteome for current protein functions and predictions in a few seconds. With Harvester it is now possible to compare and check the quality of different database entries and prediction algorithms on a single page. Sponsors: This work has been supported by the BMBF with grants 01GR0101 and 01KW0013.
Proper citation: Bioinformatic Harvester IV (beta) at Karlsruhe Institute of Technology (RRID:SCR_008017) Copy
https://www.medizin.uni-tuebingen.de/en/Students/Institutes/Medical+Psychology.html
The Institute of Medical Psychology and Behavioral Neurobiology in Germany is an institutional portal established at the Faculty of Medicine of the University of Tbingen in 1993. With the assignment of the chair for Medical Psychology and Medical Sociology to Professor Birbaumer the educational task became the instruction of medical students in Medical Psychology and Medical Sociology. Christoph-Dornier-Center of Clinical Psychology at the University of Tobingen Medical Faculty In March 2001, a new institute of the Christoph Dornier Foundation was opened under the direction of Prof. Niels Birbaumer. The aim of this institute is to advance research in behavioral neurobiology and behavioral medicine. The results of the research should be directly translated into treatments. The emphasis in Tbingen is on the treatment of chronic pain and intractable epilepsy, using a combination of biofeedback training and behavioral therapy. Even though a positive effect of biofeedback has been proven in many controlled studies, the method is still far from being accepted in everyday clinical practice. The outpatient department in Tbingen intends to enable access to this treatment to a wider population of patients. Magnetoencephalography(MEG)-Center The MEG-Center (established 1997) is a central research facility at the University of Tbingen. The Center is operated by the Institute of medical psychology and behavioural Neurobiology and hosts a whole-head 151-channel system built by VSMMedtech (www.vsmmedtech.com). In early 2006 in addition to the wholehead MEG an additional special purpose MEG system will be installed in Tbingen (funded by the DFG and Land Baden Wrttemberg). This MEG is dedicated to the investigation of fetal brain signals in utero (fMEG) . The fMEG will be installed at the University Woman Clinic and operated by the staff of the MEG center. This is the first dedicated fMEG system in Europe. Some content on the website is only in German.
Proper citation: Institute of Medical Psychology and Behavioral Neurobiology, University of Tbingen (RRID:SCR_008011) Copy
http://alzheimers.med.umich.edu/
An Alzheimer's disease center which aims to conduct and promote research on Alzheimer's disease and enhance public and professional understanding of dementia through education and outreach efforts. The MADC promotes clinical research on memory and aging which involves the direct use of research volunteers, biomarkers, and other clinical data collected through the University of Michigan Memory and Aging Project.
Proper citation: Michigan Alzheimer's Disease Center (RRID:SCR_008773) Copy
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