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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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SEQUENCE LD/SEQUENCE LDHOT Resource Report Resource Website |
SEQUENCE LD/SEQUENCE LDHOT (RRID:SCR_009379) | software application, software resource | Software program that analyzes sequence data. It obtains an approximation to the likelihood of a summary of the data (as such it can be thought of as a marginal likelihood approach). It does not use all the information in the data, but computationally it can be substantially more efficient than the full-likelihood methods (and hence able to analyze larger data sets). (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154614 | http://www.maths.lancs.ac.uk/~fearnhea/Software.html | SCR_009379 | 2026-08-04 09:42:22 | 0 | |||||||||
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SDMINP Resource Report Resource Website |
SDMINP (RRID:SCR_009377) | SDMINP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 24,2023. Software program for fast calculation of empirical and adjusted p-values for correlated and uncorrelated hypotheses in multiple testing experiments. It is based on the Free Step-Down Resampling Method for controlling the Family Wise Error Rate, originally proposed by Westfall and Young (1993), and implements a variation of the efficient algorithm of Ge et al. (2003), in which the originally necessary re-sampling effort was reduced considerably and the method made computationally more feasible. The program is independent of the underlying test statistic and works with provided observed and permutation test statistics. (entry from Genetic Analysis Software) | gene, genetic, genomic, python 2.3.5, unix, linux, ms-windows | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154612 | http://www.dkfz.de/SDMinP/ | SCR_009377 | Step-Down MIN P-value | 2026-08-04 09:42:21 | 0 | ||||||
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R/SNP.PLOTTER Resource Report Resource Website 1+ mentions |
R/SNP.PLOTTER (RRID:SCR_009376) | software application, software resource | An R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data. Main features of the package include options to display a linkage disequilibrium (LD) plot and the ability to plot multiple sets of results simultaneously. Plots can be created using global and/or individual haplotype p-values along with single SNP p-values. Images are created as either Portable Document Format (PDF) or Encapsulated (EPS) files. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154599, SCR_009405, nlx_154649 | https://github.com/cannin/snp_plotter | http://cbdb.nimh.nih.gov/~kristin/snp.plotter.html | SCR_009376 | SNP.PLOTTER | 2026-08-04 09:42:22 | 2 | |||||||
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R/METASIM Resource Report Resource Website 1+ mentions |
R/METASIM (RRID:SCR_009370) | software application, software resource | An R package that uses an individual-based approach to simulate distributions of genotypes that result from arbitrary within and among population demographies (including extinction/recolonization). These distributions can be used to test new or existing population-genetics summary statistics or develop null distributions under various demographies. (entry from Genetic Analysis Software) | gene, genetic, genomic, r, c++, unix, ms-windows, macos | is listed by: Genetic Analysis Software | nlx_154592 | http://linum.cofc.edu/software.html | SCR_009370 | METApopulation SIMulation | 2026-08-04 09:42:22 | 1 | ||||||||
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ROSATTA SYLLEGO SYSTEM Resource Report Resource Website |
ROSATTA SYLLEGO SYSTEM (RRID:SCR_009363) | Syllego system | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 2, 2014. A genetic data management and analysis system designed to advance your whole genome association, linkage, and eQTL studies, providing you with an easy-to-use project workspace so that you can organize, analyze, and share your genotype and phenotype data along with your analysis results. With the Syllego system, generating high quality analysis data and meaningful results becomes simple. The Syllego system automates all tedious data management and data formatting tasks so that you can streamline your genetic analysis workflows using your analysis methods of choice. Managing all your genetic data and reference information is straightforward. The Syllego system converts public and private genotype data sets and reference annotations, such as dbSNP and HapMap, as well as individual (sample) information into a single, consistent repository for fast, convenient access. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154578 | SCR_009363 | 2026-08-04 09:42:22 | 0 | ||||||||
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ROMPREV Resource Report Resource Website |
ROMPREV (RRID:SCR_009361) | ROMPREV | software application, software resource | Software tool for testing for association between polymorphisms and quantitative traits, as well as estimating trait heritability and locus-specific heritability using family data. (entry from Genetic Analysis Software) | gene, genetic, genomic, r, any with r installation, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154577, biotools:romprev | https://bio.tools/romprev | SCR_009361 | Regression of Offspring on Mid-Parent (REVised) | 2026-08-04 09:42:21 | 0 | |||||||
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PASS PEDIGREE Resource Report Resource Website |
PASS PEDIGREE (RRID:SCR_009315) | PASS PEDIGREE | software application, software resource | Software application to draw the most complex family trees in a matter of minutes instead of hours of work. The basis of this is an algorithm for automatically builing a family tree. Of course, manual adjustments in the family tree can be made for your specific requirements. PASS Pedigree meets all international conventions concerning the drawing of pedigrees. A converter can convert historical Cyrillic pedigrees automatically to PASS Pedigree. Unlike before, all your family trees are stored in one single database. PASS Pedigree can intelligently connect to many genetic centers (e.g. three genetic centers in the Netherlands) with the existing patient information, via the lab system HELIX based on HL7 techniques. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154509 | SCR_009315 | 2026-08-04 09:42:21 | 0 | |||||||||
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OSIRIS Resource Report Resource Website 100+ mentions |
OSIRIS (RRID:SCR_009313) | OSIRIS | software application, software resource | Software tool for the retrieval of articles from MEDLINE related to the sequence variants reported for a human gene. The variations considered are single nucleotide polymorphisms (SNPs), insertion/deletion polymorphisms (indel), microsatellite, and named variations (e.g. Alu sequences). (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154505 | SCR_009313 | 2026-08-04 09:42:21 | 218 | ||||||||
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P ACT Resource Report Resource Website 1+ mentions |
P ACT (RRID:SCR_009314) | P_ACT | software application, software resource | An R program that adjusts sets of up to 1000 p-values from association tests between correlated traits and SNPs for multiple testing, accounting for the correlation between tests. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154506 | SCR_009314 | P-values: Adjustment for Correlated Tests | 2026-08-04 09:42:20 | 4 | ||||||||
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MARGARITA Resource Report Resource Website 1+ mentions |
MARGARITA (RRID:SCR_009279) | MARGARITA | software application, software resource | Software application that infers genealogies from population genotype data and uses these to map disease loci. These genealogies take the form of the Ancestral Recombination Graph (ARG). The ARG defines a genealogical tree for each locus, and as one moves along the chromosome the topologies of consecutive trees shift according to the impact of historical recombination events. (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154460 | SCR_009279 | 2026-08-04 09:42:21 | 2 | |||||||||
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MAPINSPECT Resource Report Resource Website 100+ mentions |
MAPINSPECT (RRID:SCR_009277) | MAPINSPECT | software application, software resource | Software application that can be used to compare linkage maps obtained from different sources/populations/etc.. It will draw the linkage maps and look for common marker names, these are then connected in the drawing with dashed lines. All neighboring maps are compared in this way. Images can be printed and saved. Orders of the MAPs (ie which map is compared with which other map) can be changed and maps can be flipped (right mouse button). remark: MapComp bears close relationships with the GGT software package (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, delphi pascal, ms-window (32-bit) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154458 | SCR_009277 | GGT | 2026-08-04 09:42:20 | 324 | |||||||
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NOCOM Resource Report Resource Website 1+ mentions |
NOCOM (RRID:SCR_009310) | NOCOM | software application, software resource | Software application to estimate parameters for mixture of normal distributions (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, ms-dos, os2 | is listed by: Genetic Analysis Software | nlx_154500 | SCR_009310 | 2026-08-04 09:42:20 | 8 | |||||||||
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MAPDISTO Resource Report Resource Website 100+ mentions |
MAPDISTO (RRID:SCR_009275) | MAPDISTO | software application, software resource | Software program for mapping genetic markers in experimental segregating populations like backcross, doubled haploids, single-seed descent. Its specificity is to propose recombination fraction estimates in case of segregation distortion. It can (1) compute and draw genetic maps easily and quickly through a graphical interface; (2) facilitate the analysis of marker data showing segregation distortion due to differential viability of gametes or zygotes. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-excel | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154456 | SCR_009275 | 2026-08-04 09:42:20 | 115 | ||||||||
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MAP/MAP+/MAP+H/MAP2000 Resource Report Resource Website |
MAP/MAP+/MAP+H/MAP2000 (RRID:SCR_009272) | MAP/MAP+/MAP+H/MAP2000 | software application, software resource | Software application for multiple pairwise linkage analysis under interference (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, unix, sunos | is listed by: Genetic Analysis Software | nlx_154453 | SCR_009272 | (MAP+H is the radiation Hybrid module of MAP+) | 2026-08-04 09:42:20 | 0 | ||||||||
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MANTEL-STRUCT Resource Report Resource Website 1+ mentions |
MANTEL-STRUCT (RRID:SCR_009271) | MANTEL-STRUCT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application that tests for population structure through the use of Mantel tests (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154451 | SCR_009271 | 2026-08-04 09:42:20 | 4 | ||||||||
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MULTISIM Resource Report Resource Website 10+ mentions |
MULTISIM (RRID:SCR_009308) | MULTISIM | software application, software resource | Software application to analyze the numbers of individuals that founded new populations following a bottleneck or founding event (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-dos | is listed by: Genetic Analysis Software | nlx_154498 | SCR_009308 | 2026-08-04 09:42:21 | 12 | |||||||||
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MALDSOFT Resource Report Resource Website |
MALDSOFT (RRID:SCR_009269) | MALDSOFT | software application, software resource | Software program for admixture mapping of complex trait loci, using case-control data. The samples should come from a recently-admixed population; additional ''learning'' samples from the parental populations are helpful. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, linux, ms-windows, (dos/window...) | is listed by: Genetic Analysis Software | nlx_154449 | SCR_009269 | 2026-08-04 09:42:20 | 0 | |||||||||
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SAGE Resource Report Resource Website 1000+ mentions |
SAGE (RRID:SCR_009302) | SAGE | software application, software resource | Software application that provides researchers with the tools necessary for various types of statistical genetic analysis of human family data. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, version 4.0 will be in c++, unix, (dec unix/solaris), ms-windows, (95/nt), linux |
is listed by: Genetic Analysis Software is listed by: SoftCite |
nlx_154606 | SCR_009302 | Statistical Analysis for Genetic Epidemiology | 2026-08-04 09:42:21 | 1029 | ||||||||
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PEDMANAGER Resource Report Resource Website |
PEDMANAGER (RRID:SCR_009300) | PEDMANAGER | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix | is listed by: Genetic Analysis Software | nlx_154491 | SCR_009300 | 2026-08-04 09:42:20 | 0 | |||||||||
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SIBERROR Resource Report Resource Website |
SIBERROR (RRID:SCR_009380) | software application, software resource | Software application that identifies pedigree errors in sibship data. Examples include half siblings, unrelated individuals, identical twins, and parental exclusions. The test statistic is based on the summation of the number of alleles shared by a pair of relatives for a large number of markers and the number of alleles and allele frequencies for those markers. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix | is listed by: Genetic Analysis Software | nlx_154615 | SCR_009380 | SibError | 2026-08-04 09:42:21 | 0 |
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