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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://github.com/singerlabgt/BrainWAVE
Code to program and run flicker stimulation on BrainWAVE stimulator device. This brain oscillation stimulating software can be adapted across subjects and integrated into variety of experimental designs like electrophysiology, neuroimaging, EEG, MRI. Flexible method for noninvasive stimulation of brain rhythms across species. Used to measure effects of rhythmic brain activity on behavior.
Proper citation: BrainWAVE (RRID:SCR_024396) Copy
https://biologics.utexas.edu/research/advanced-protein-therapeutics-core
Core catalyzes translation of scientific discoveries into novel protein cancer therapies. Offers therapeutic antibody and enzyme discovery, engineering, and optimization services.
Proper citation: University of Texas at Austin Advanced Protein Therapeutics Core Facility (RRID:SCR_023740) Copy
http://faculty.washington.edu/maga/SCRI_MicroCT/
Shared instrument facility that has a Bruker Skyscan 1272 ex-vivo microCT that is capable of X-ray imaging at sub-microb resolution. The instrument can optionally be equipped with a 16-sample sample changer to automate the scanning queue. Core provides visualization and image analysis support for researchers, using open-source 3D Slicer biomedical imaging suite.
Proper citation: Seattle Children's Research Institute Micro Computed Tomography Imaging and Visualization Lab Core Facility (RRID:SCR_024678) Copy
https://biotech.unl.edu/flow-cytometry#tab1
Provides flow cytometry services. Instruments include Beckman Coulter CytoFLEX SRT sorter and CytoFLEX LX, as well as NanoAnalyzer from NanoFCM. Facility staff are able to assist with everything from experimental design, instrument training, sample collection, and data analysis.
Proper citation: University of Nebraska Lincoln Flow Cytometry Core Facility (RRID:SCR_024711) Copy
https://github.com/KanduriC/simAIRR
Software tool for simulation of antigen experienced adaptive immune receptor repertoire datasets for benchmarking of machine learning methods.
Proper citation: simAIRR (RRID:SCR_023956) Copy
Core provides instrumentation for light and fluorescence based microscopy, including epifluorescence, confocal, and super-resolution imaging.Provides access to and training on basic and advanced light microscopy techniques. Expertise and advice is available for the design of experiments involving these techniques.
Proper citation: University of Wisconsin-Madison Biochemistry Optical Core Facility (RRID:SCR_023952) Copy
https://www.sdstate.edu/genomics-sequencing-facility
Facility offers custom sequencing services from DNA/RNA extractions to sequencing using Illumina and Oxford Nanopore platforms. Projects examples include bulk RNAseq, 3\'RNASeq, Single Cell transcriptomics (10X Genomics), Genome sequencing, and amplicon sequencing (ie 16SRNA, genotyping). Services include experimental design and bioinformatics data analysis.
Proper citation: South Dakota State University Genomics Sequencing Core Facility (RRID:SCR_023959) Copy
https://med.stanford.edu/cancer/research/shared-resources/biostatistics_research_informatics.html
Core provides statistical support to SCI members by engages them on their data related needs. Specifically, BSR members assist researchers at each stage of study’s lifecycle, including project design, mid study evaluation and interpretation and reporting of results. In addition, BSR members mentor SCI investigators in research methods. BSR assists with development and review of proposed studies and planning of research related data management systems.
Proper citation: Stanford University School of Medicine Cancer Institute Biostatistics Shared Resource Core Facility (RRID:SCR_023696) Copy
Imaging and cytometry facility of the Montpellier area.
Proper citation: Montpellier Imaging Resources Core Facility (RRID:SCR_023727) Copy
http://researchservices.pitt.edu/facilities/machine-shop
Core specializes in mechanical design, fabrication, and repair of research equipment and instrumentation.
Proper citation: University of Pittsburgh Dietrich School Machine Shop Core Facility (RRID:SCR_023720) Copy
http://mayoresearch.mayo.edu/center-for-individualized-medicine/medical-genome-facility.cfm
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 23,2026. Medical Genome Facility includes Cytogenetics Core, Genome Analysis Core and Proteomics Core. Available services include Sanger DNA sequencing, genotyping, gene expression and cytogenetic analysis, biospecimens accessioning and processing, tissue and cell molecular analysis, RNA interference, and oligonucleotide synthesis. Provides Illumina HiSeq2000 platforms and Pacific Biosciences RS single molecule real-time sequencer.Offers applied research services for development of innovative, personalized tests and treatments, especially with regard to biomarkers.
Proper citation: Mayo Clinic Medical Genome Core Facility (RRID:SCR_024632) Copy
https://www.uniklinik-freiburg.de/medizin1/forschung/lighthouse-core-facility.html
Core specializes in areas of flow cytometry and cell sorting; light microscopy including confocal, widefield fluorescence, high content screening, lightsheet, slide scanning, highly multiplexed microscopy; and digital PCR / QPCR. It is located at University of Freiburg Medical Center and hosts institutions including Dept. of Medicine I, Center for Chronic Immunodeficiency (CCI), CCCF / DKTK, and Medical Faculty of University of Freiburg.
Proper citation: University of Freiburg Medical Center Lighthouse Core Facility (RRID:SCR_023785) Copy
https://www.iqm.unicamp.br/en/research/limicro/
Core offers services in advancing scientific research in the field of chemistry. Provides Scanning Electron Microscopy (SEM), Atomic Force Microscopy (AFM), Confocal Laser Scanning Microscopy (CLSM), and Optical Microscopy. Offers sample preparation techniques, including ultramicrotome, ultracryomicrotome, and sputter coating,training and technical support.
Proper citation: State University of Campinas Institute of Chemistry Microscopy Core Facility (RRID:SCR_024633) Copy
https://pxdata.stat.fi/PxWeb/pxweb/en/StatFin/
Finland's statistical database contains collection of statistical tables on Finnish society and population of Finland including economy, housing, transport, tourism, consumption, prices, wages and salaries, energy, enterprises and other topics.
Proper citation: StatFin database (RRID:SCR_024843) Copy
National Prostate Cancer Register of Sweden database.
Proper citation: National Prostate Cancer Register of Sweden (RRID:SCR_024844) Copy
https://www.bidmc.org/research/core-facilities/ncrna-core
Delivery Unit offers training and services on the NanoAssemblr Spark, NanoAssemblr Ignite+, and Malvern Zetasizer for the purpose of synthesis and characterisation of Lipid Nanoparticles (LNPs). The Zetasizer is able to read zeta potential and size of particles, including exosomes, liposomes, and LNPs.
Proper citation: Beth Israel Deaconess Medical Center Precision RNA Medicine Delivery Unit Core Facility (RRID:SCR_024862) Copy
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/MCFLIRT
Software intra-modal motion correction tool designed for use on fMRI time series for linear (affine) inter- and inter-modal brain image registration.
Proper citation: MCFLIRT (RRID:SCR_024792) Copy
https://med.unr.edu/research/core-facilities-centers/high-spatial-temporal-resolution-imaging-core
Core provides high spatial and temporal resolution imaging methodologies and instrumentation for studying cellular structure, signaling pathways, and function in health and disease. Offers education, training and expertise in advising investigators in the use of the new technologies.
Proper citation: University of Nevada Reno School of Medicine High Spatial and Temporal Resolution Imaging Core Facility (RRID:SCR_024793) Copy
https://animalmodels.biotech.wisc.edu/
Core provides support for generation of novel animals including mice, rats and swine models using CRISPR or transgenic technology, cryopreservation, rederivation, and IVF recovery of rodent animal models.
Proper citation: University of Wisconsin Madison Biotechnology Center Animal Models Core Facility (RRID:SCR_024797) Copy
https://github.com/STOmics/Spatialign.git
Software tool as unsupervised contrastive learning model that employs expression of all measured genes and spatial location of cells, to integrate multiple tissue sections. Enables joint downstream analysis of multiple datasets in low-dimensional embeddings and also in reconstructed full expression space. Used for integrative analysis of time-series brain sections, including spatial clustering, differential expression analysis, and particularly trajectory inference that requires corrected gene expression matrix.
Proper citation: spatiAlign (RRID:SCR_024828) Copy
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