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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Drugmonizome Resource Report Resource Website 1+ mentions |
Drugmonizome (RRID:SCR_024821) | database, data or information resource | Database with search engine for querying annotated sets of drugs and small molecules for performing drug set enrichment analysis. | annotated sets of drugs and small molecules, searching of annotated sets of drugs and small molecules, drugs, small molecules, | NCI U24CA224260; NHLBI U54HL127624; NIH Office of the Director OT2OD030160 |
PMID:33787872 | Free, Freely available | SCR_024821 | 2026-08-14 09:29:06 | 1 | |||||||||
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National Primate Research Center Consortium Resource Report Resource Website 1+ mentions |
National Primate Research Center Consortium (RRID:SCR_024839) | NPRC Consortium | data or information resource, portal, consortium, organization portal | NPRC Consortium is collaboration across seven Centers to increase access and promote sharing of NonHuman Primate related resources among biomedical researchers. NPRCs advance missions of NIH Institutes, Centers, and Offices by providing animals, facilities, expertise, and resources required by investigators in disease specific areas. Each Center provides expertise on the use of various NHP species as models of human disease to address specific research projects in major research fields such as infectious diseases, aging, cardiovascular disease, diabetes and metabolic disorders, neuroscience, pediatrics, regenerative medicine, reproductive health, and women’s health. ORIP supports Specific Pathogen Free rhesus macaque colonies at the California,Oregon, Southwest, Yerkes, and Tulane NPRCs and the Caribbean Primate Research Center in Puerto Rico. Additionally, SPF pigtail macaque colonies are maintained at the Washington NPRC and at the Johns Hopkins University School of Medicine. | NPRC, NPRC Consortium, ORIP, NonHuman Primate, |
lists: Wisconsin National Primate Research Center lists: Oregon National Primate Research Center lists: California National Primate Research Center lists: Southwest National Primate Research Center lists: Tulane National Biomedical Research Center lists: Caribbean Primate Research Center lists: Yerkes National Primate Research Center |
NIH Office of Research Infrastructure Programs | https://nprc.org/wp-content/uploads/2019/04/2018_Fall_ORIP_NHP_FS_FV_508.pdf | SCR_024839 | , NPRC Consortium, The National Primate Research Center (NPRC) Consortium, The National Primate Research Center Consortium | 2026-08-14 09:28:52 | 1 | |||||||
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SpikeHunter Resource Report Resource Website 1+ mentions |
SpikeHunter (RRID:SCR_024831) | data processing software, software application, data analysis software, software resource, sequence analysis software | Software deep learning tool for identifying phage tailspike proteins. Used to identify phage tailspike proteins. | identifying phage tailspike proteins, phage tailspike protein, deplolymerase, right-handed beta-helix, | NLM ; NSF |
PMID:37503040 | Free, Available for download, Freely available | SCR_024831 | 2026-08-14 09:28:52 | 1 | |||||||||
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NAVIP Resource Report Resource Website 1+ mentions |
NAVIP (RRID:SCR_024838) | NAVIP | software application, simulation software, software resource | Software tool for functional impact prediction for sequence variants. Neighborhood-Aware Variant Impact Predictor (NAVIP) considers all variants within a given protein coding sequence when predicting the functional consequences. | functional impact prediction for sequence variants, functional impact prediction, sequence variants, | DOI:10.1101/596718 | Free, Available for download, Freely available | SCR_024838 | , Neighborhood-Aware Variant Impact Predictor (NAVIP), Neighborhood-Aware Variant Impact Predictor | 2026-08-14 09:29:06 | 1 | ||||||||
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PEPhub Resource Report Resource Website 1+ mentions |
PEPhub (RRID:SCR_024892) | database, web service, data access protocol, data or information resource, software resource | Web biological metadata server to view, store, and share your sample metadata in form of Portable Encapsulated Projects. PEPhub takes advantage of PEP biological metadata standard to store, edit, and access your PEPs in one place. Components include database where PEPs are stored; API to programmatically read and write PEPs in database; web based user interface to view and manage these PEPs via front end. | Portable Encapsulated Projects, biological metadata server, sharing, retrieving, validating, sample metadata, | NIGMS R35 GM128636; NHGRI R01 HG012558 |
PMID:37645717 | Free, Available for download, Freely available | https://github.com/pepkit/pephub | SCR_024892 | Portable Encapsulated Projects hub | 2026-08-14 09:29:24 | 2 | |||||||
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CZ CELLxGENE Discover Resource Report Resource Website 100+ mentions |
CZ CELLxGENE Discover (RRID:SCR_024894) | data or information resource, catalog, portal, database | Portal used to find and download any of data sets published on CELLxGENE. Allows to download and visually explore data to understand functionality of human tissues at cellular level. Optimized for finding, exploring, and reusing single cell data. Collections Page lists collections hosted on CELLxGENE Discover and metadata that define tissue, assay, disease, organism, and cell count for each collection. Once you find published dataset of interest on CELLxGENE Discover, you can click on the explore button below the dataset description to explore the cells of that dataset using the CELLxGENE Explorer. | BICAN, visually explore data, functionality of human tissues at cellular level, tissue, assay, disease, organism, cell count, collection | is related to: BRAIN Initiative Cell Atlas Network | Free, Freely available | SCR_024894 | Chan Zuckerberg CELL by GENE Discover | 2026-08-14 09:28:52 | 139 | |||||||||
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Louisiana State University in Shreveport Research Core Facility Resource Report Resource Website 10+ mentions |
Louisiana State University in Shreveport Research Core Facility (RRID:SCR_024775) | RCF | service resource, access service resource, core facility | Core provides access to research services, educational and training opportunities, and technologies including cellular metabolism, flow cytometry, fluorescence, confocal, super resolution confocal microscopy, next generation sequencing, and real-time PCR. Provides assistance with all aspects of these technologies, including experimental design, protocol optimization, instrument operation, and data analysis. | ABRF, cellular metabolism, flow cytometry, fluorescence, confocal microscopy, super resolution confocal microscopy, next generation sequencing, RT PCR, |
is listed by: ABRF CoreMarketplace has parent organization: Louisiana State University; Louisiana; USA |
Open | ABRF_2566 | https://coremarketplace.org/?FacilityID=2566&citation=1 | SCR_024775 | Research Core Facility | 2026-08-14 09:29:22 | 23 | ||||||
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United States Cancer Statistics Public Information Data Resource Report Resource Website 1+ mentions |
United States Cancer Statistics Public Information Data (RRID:SCR_024896) | data or information resource, topical portal, disease-related portal, portal | United States Cancer Statistics public information data provided by Centers for Disease Control and Prevention. | Centers for Disease Control, cancer statistics, USA, public information, | cancer | Free, Freely available | SCR_024896 | 2026-08-14 09:29:24 | 1 | ||||||||||
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cisTarget Resource Report Resource Website 100+ mentions |
cisTarget (RRID:SCR_024808) | database, data or information resource | Web application to download database for motif enrichment, motif annotations,cluster-buster implementation, precomputed regions for creating gene-based databases and to download lists of transcription factors for human, mouse and fly, chip-seq tracks annotations. | motif enrichment, motif annotations, cluster-buster implementation, precomputed regions for creating gene-based databases, transcription factors for human, mouse and fly, chip-seq tracks annotations, | Free, Available for download, Freely available | SCR_024808 | 2026-08-14 09:29:06 | 128 | |||||||||||
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MSIsensor-pro Resource Report Resource Website 1+ mentions |
MSIsensor-pro (RRID:SCR_024765) | data processing software, software application, data analysis software, software resource, sequence analysis software | Software tool for microsatellite instability detection using high throughput sequencing data. It accepts the whole genome sequencing, whole exome sequencing and target region sequencing data as input. Introduces multinomial distribution model to quantify polymerase slippages for each tumor sample and discriminative sites selection method to enable MSI detection without matched normal samples. | Microsatellite instability, microsatellite instability detection, high throughput sequencing data, whole genome sequencing data, whole exome sequencing data, target region sequencing data, MSI detection, | PMID:32171661 | Free, Available for download, Freely available | SCR_024765 | 2026-08-14 09:28:51 | 4 | ||||||||||
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Adobe Fresco Resource Report Resource Website 1+ mentions |
Adobe Fresco (RRID:SCR_024887) | software application, software resource | Software digital painting and drawing application. Used to create figures. Built for the latest stylus and touch devices, now including iPhones. Collection of vector and raster brushes, live brushes, to deliver natural painting and drawing experience.Vector and raster graphics editor developed by Adobe primarily for digital painting. Originally designed for the Apple iPad with Pencil support. | Adobe, collection of vector and raster brushes, live brushes, digital painting and drawing, | Restricted | SCR_024887 | 2026-08-14 09:29:07 | 1 | |||||||||||
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FMRIB's Automated Segmentation Tool Resource Report Resource Website 1+ mentions |
FMRIB's Automated Segmentation Tool (RRID:SCR_024920) | FAST | software application, software resource | Software tool to segment 3D image of brain into different tissue types like Grey Matter, White Matter, CSF, etc., whilst also correcting for spatial intensity variations also known as bias field or RF inhomogeneities. Used to perform tissue type segmentation and bias field correction. | Functional Magnetic Resonance Imaging of the Brain, segment 3D image of brain, segment 3D image, brain image, different tissue types, spatial intensity variations corrections, bias field, RF inhomogeneities, | is a plug in for: FSL | Free, Freely available | SCR_024920 | FAST:FMRIB's Automated Segmentation Tool, Functional Magnetic Resonance Imaging of the Brain's Automated Segmentation Tool | 2026-08-14 09:29:07 | 8 | ||||||||
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ichorCNA Resource Report Resource Website 10+ mentions |
ichorCNA (RRID:SCR_024768) | software application, simulation software, software resource | Software tool that quantifies tumor content in cfDNA from 0.1× coverage whole-genome sequencing data without prior knowledge of tumor mutations. Used to simultaneously segment genome, predict large scale copy number alterations, and estimate tumor fraction of ultra low pass whole genome sequencing sample. | quantify tumor content, simultaneously segment genome, predict large scale copy number alterations, estimate tumor fraction, ultra low pass whole genome sequencing sample, | has parent organization: Broad Institute | Gerstner Family Foundation ; Canadian Institutes for Health Research Postdoctoral Fellowship ; NCI P30 CA14051 |
PMID:29109393 | Free, Available for download, Freely available | SCR_024768 | 2026-08-14 09:29:06 | 32 | ||||||||
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FMRIB's Linear Image Registration Tool Resource Report Resource Website 10+ mentions |
FMRIB's Linear Image Registration Tool (RRID:SCR_024922) | FLIRT | image analysis software, data processing software, registration software, software application, software resource | Sotware automated robust and accurate tool for linear (affine) intra- and inter-modal brain image registration. | linear, affine, intra, inter, modal, brain, image, registration, brain image registration, | is a plug in for: FSL | Free, Freely available | SCR_024922 | 2026-08-14 09:29:25 | 17 | |||||||||
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XSwap Resource Report Resource Website 1+ mentions |
XSwap (RRID:SCR_024802) | software toolkit, data processing software, software application, data analysis software, software resource, software library | Software Python library (C++ backend) for degree preserving network randomization. | Python library, degree preserving network randomization, | DOI:10.1101/2023.01.05.522939 | Free, Available for download, Freely available | SCR_024802 | 2026-08-14 09:29:23 | 1 | ||||||||||
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FNIRT Resource Report Resource Website 10+ mentions |
FNIRT (RRID:SCR_024923) | software application, software resource | Software tool to perform linear registration, meaning that it will translate, rotate, zoom and shear one image to match it with another. | perform linear registration, translate, rotate, zoom, shear, image, match image with another image, | is a plug in for: FSL | Free, Freely available | SCR_024923 | 2026-08-14 09:29:07 | 10 | ||||||||||
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SGAE Resource Report Resource Website 1+ mentions |
SGAE (RRID:SCR_024803) | software application, software resource | Software graph neural network based tool for spatial domain deciphering. Used for deciphering spatial domains from spatially resolved transcriptomics. | graph neural network, spatial domain deciphering, spatially resolved transcriptomics, | Free, Available for download, Freely available | SCR_024803 | Siamese Graph Autoencoder | 2026-08-14 09:29:06 | 1 | ||||||||||
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SIENA Resource Report Resource Website 1+ mentions |
SIENA (RRID:SCR_024925) | data processing software, software application, data analysis software, software resource | Software package for both single-time-point and two-time-point analysis of brain change. Used to estimate percentage brain volume change between two input images, taken of the same subject, at different points in time. | estimate percentage brain volume change, different points in time, analysis of brain change, estimation of atrophy, volumetric loss of brain tissue estimation, |
is related to: SIENAX is a plug in for: FSL |
Free, Freely available, | SCR_024925 | 2026-08-14 09:29:25 | 3 | ||||||||||
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Beth Israel Deaconess Medical Center Precision RNA Medicine Detection Unit Core Facility, Resource Report Resource Website 1+ mentions |
Beth Israel Deaconess Medical Center Precision RNA Medicine Detection Unit Core Facility, (RRID:SCR_024819) | service resource, access service resource, core facility | Detection Unit of ncRNA Core can perform highly sensitive microRNA detection platform for diverse biospecimens.Technology is based on qPCR and uses single plate panel for simultaneous detection of 384 miRNAs using MIRXES technology. Services offered by unit include Detection of miRNA, Analysis of dysregulated miRNA,Consultation and support for non-coding RNA biology and research. | ABRF, non-coding RNA, microRNA detection platform, detection of 384 miRNAs, MIRXES technology, Detection of miRNA, Analysis of dysregulated miRNA, |
is listed by: ABRF CoreMarketplace has parent organization: Harvard Medical School; Massachusetts; USA |
ABRF_2598 | https://coremarketplace.org/?FacilityID=2598&citation=1 | SCR_024819 | , Beth Israel Deaconess Medical Center Detection Unit Precision RNA Medicine Core, Detection Unit Precision RNA Medicine Core, BIDMC Detection Unit Precision RNA Medicine Core | 2026-08-14 09:29:23 | 1 | ||||||||
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Louisiana State University in Shreveport Small Animal Imaging Core Facility Resource Report Resource Website 1+ mentions |
Louisiana State University in Shreveport Small Animal Imaging Core Facility (RRID:SCR_024777) | SAIF | service resource, access service resource, core facility | Core provides imaging support to investigators who use small animal models in their research. Offers bioluminescence and fluorescence imaging, X-ray imaging, computed tomography, and positron emission tomography. Core provides imaging support services for investigators, including assistance in experimental design, conducting animal studies including anesthetization and imaging acquisition, and processing and interpreting imaging data. | ABRF, imaging, small animal models, bioluminescence and fluorescence imaging, X-ray imaging, computed tomography, positron emission tomography, |
is listed by: ABRF CoreMarketplace has parent organization: Louisiana State University; Louisiana; USA |
ABRF_2567 | https://coremarketplace.org/?FacilityID=2567&citation=1 | SCR_024777 | , Louisiana State University in Shreveport Small Animal Imaging Facility, Small Animal Imaging Facility | 2026-08-14 09:28:51 | 2 |
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