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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ont-assembly-snake Resource Report Resource Website 1+ mentions |
ont-assembly-snake (RRID:SCR_024898) | source code, software application, software resource | Software Snakemake workflow for bacterial genome assembly plus polishing for Oxford Nanopore sequencing using multiple tools. | Snakemake workflow, bacterial genome assembly, polishing for Oxford Nanopore sequencing, | Free, Available for download, Freely available, | SCR_024898 | 2026-08-14 09:28:52 | 1 | |||||||||||
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Louisiana State University in Shreveport Redox Molecular Signaling Core Facility Resource Report Resource Website 1+ mentions |
Louisiana State University in Shreveport Redox Molecular Signaling Core Facility (RRID:SCR_024778) | service resource, access service resource, core facility | Facility includes Analytic Redox Biology and Molecular Signaling Sub-Cores. Provided services include measurements of reactive oxygen species, reactive nitrogen species, reactive sulfide species, protein, peptides, metabolites, and lipids in cell culture and tissue samples. High-performance liquid chromatography systems, coupled with UV-vis and fluorescence detectors to quantify cellular and mitochondrial superoxide production, hydrogen sulfide pools (free sulfide, sulfide bound to transitional metals, and sulfane sulfur), and thiols (glutathione, GSH/GSSG, cysteine, cystine, homocysteine, persulfides, and glutathionylation).Instruments include Sievers NO Analyzer (NOA 280i, GE), Agilent 8890 GC and 8335 sulfur chemiluminescence detector ,Thermo Scientific Orbitrap Exploris 480 and SCIEX Triple Quad 7500 mass spectrometer. Molecular Signaling Sub-Core offers services for molecular cloning and site-directed mutagenesis, design and production of vectors for CRISPR/Cas9 modification of vascular cells, services for endothelial, smooth muscle, and cardiac myocyte cell isolation, for generation of vascular cell lines, and for lentivirus production for transient or stable modification of cardiovascular cells, access to equipment and expertise for studying cellular effects of hypoxia/reoxygenation injury (Coy Hypoxic Chamber, CLARIOstar Spectrofluorometer), for automated capillary Western blot analysis (ProteinSimple Jess Simple Western), and for high-resolution fluo-respirometry to study mitochondrial function (Oroboros O2k modular system). | ABRF, Analytic Redox Biology, Molecular Signaling, |
is listed by: ABRF CoreMarketplace has parent organization: Louisiana State University; Louisiana; USA |
ABRF_2569 | https://coremarketplace.org/?FacilityID=2569&citation=1 | SCR_024778 | , CoBRE Redox Molecular Signaling Core, Redox Molecular Signaling Core | 2026-08-14 09:29:22 | 6 | ||||||||
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Louisiana State University in Shreveport CAIPP Bioinformatics and Modeling Core Facility Resource Report Resource Website 10+ mentions |
Louisiana State University in Shreveport CAIPP Bioinformatics and Modeling Core Facility (RRID:SCR_024779) | service resource, access service resource, core facility | Core supports data analysis, network modeling, and data science research. Provides training and education opportunities. | ABRF, data analysis, network modeling, data science, |
is listed by: ABRF CoreMarketplace has parent organization: Louisiana State University; Louisiana; USA |
COBRE Grant Award NIH/NIGMS CoBRE award P20 GM134974. | Open | ABRF_2571 | https://coremarketplace.org/?FacilityID=2571&citation=1 | SCR_024779 | CAIPP Bioinformatics and Modeling Core | 2026-08-14 09:29:06 | 11 | ||||||
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AutoTube Resource Report Resource Website 1+ mentions |
AutoTube (RRID:SCR_024815) | image analysis software, data processing software, software application, software resource, source code | Software that quantifies vascular morphometry parameters like area covered by vessels, vessel width, skeleton length and branching or crossing points of vascular networks in tissues and in vitro assays. | vascular morphometry parameters quantification, vascular networks in tissues and in vitro assays, | Swiss National Science Foundation ; European Research Council |
PMID:30370470 | Free, Available for download, Freely available | https://github.com/autotubularity/autotube/wiki | SCR_024815 | 2026-08-14 09:28:52 | 4 | ||||||||
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SciBet Resource Report Resource Website 1+ mentions |
SciBet (RRID:SCR_024743) | software application, simulation software, software resource | Software tool as supervised cell type identifier that accurately predicts cell identity for newly sequenced single cells. | supervised cell type identifier, predict cell identity, newly sequenced single cells | National Natural Science Foundation of China | PMID:32286268 | Free, Available for download, Freely available | SCR_024743 | 2026-08-14 09:29:22 | 4 | |||||||||
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University of Calgary Live Cell Imaging Laboratory Core Facility Resource Report Resource Website 1+ mentions |
University of Calgary Live Cell Imaging Laboratory Core Facility (RRID:SCR_024748) | LCI | service resource, access service resource, core facility | Offers advanced imaging technology, as well as training and support personalized to their imaging goals and experience. Provides Technology access and training; Assisted imaging and coaching at every step of the imaging workflow, from sample preparation to data analysis; Pilot experiments and feasibility testing; Developing custom image analysis pipelines; Image analysis consultation and training; Developing and testing new instruments and devices; Full scientific and technological collaborations and partnerships; Offsite coaching, assistance and consulting ; Collaborative projects in academic, health and allied industrial sectors; | ABRF, advanced imaging technology, imaging services, |
is listed by: ABRF CoreMarketplace has parent organization: University of Calgary; Alberta; Canada |
Open | ABRF_2554 | https://coremarketplace.org/?FacilityID=2554&citation=1 | SCR_024748 | University of Calgary Snyder Institute- Live Cell Imaging Laboratory, , Snyder Institute- Live Cell Imaging Laboratory | 2026-08-14 09:28:51 | 2 | ||||||
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University of Manchester Mass Spectrometry and Separations Core Facility Resource Report Resource Website 1+ mentions |
University of Manchester Mass Spectrometry and Separations Core Facility (RRID:SCR_024761) | service resource, access service resource, core facility | Core is part of the University of Manchester Faculty of Science and Engineering. Facility offers support and services in chemistry, biology and materials. Mass spectrometers including Orbitraps, Ion Mobility, MALDI, DESI, hyphenated LC-MS and GC-MS apparatuses. Other instruments are HPLC systems, UHPLC systems and GC systems. | Mass spectrometers, chemistry services, biology and materials services, HPLC systems, liquid chromatography, |
is listed by: ABRF CoreMarketplace has parent organization: University of Manchester; Manchester; United Kingdom |
Open | ABRF_2564 | https://coremarketplace.org/?FacilityID=2564&citation=1 | SCR_024761 | , Mass Spectrometry and Separations, MS and Sep Facility | 2026-08-14 09:28:51 | 3 | |||||||
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Qt Creator Resource Report Resource Website 1+ mentions |
Qt Creator (RRID:SCR_024883) | software application, software resource | Cross-platform, complete Integrated Development Environment for application developers to create applications for multiple desktop, embedded, and mobile device platforms, such as Android and iOS. It is available for Linux, macOS and Windows operating systems. In addition, you can use the experimental WebAssembly plugin to build applications in web format and run them in web browsers. | Qt Group, integrated development environment, cross-platform Qt IDE, cross-platform Qt Integrated Development Environment, application developers, create applications, | Restricted | https://www.qt.io/?search=Qt+Creator | SCR_024883 | 2026-08-14 09:28:52 | 2 | ||||||||||
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3DHISTECH SlideViewer Resource Report Resource Website 10+ mentions |
3DHISTECH SlideViewer (RRID:SCR_024885) | software application, software resource | Software tool for working with whole slide images. Digital microscope application for supporting histopathological diagnostic workflow and microscope examination process. Advanced slide viewing software used in clinical pathology and research. | 3DHISTECH Ltd, Digital microscope application, working with whole slide images, supporting histopathological diagnostic workflow, supporting microscope examination process, | Free, Available for download, Freely available | SCR_024885 | SlideViewer | 2026-08-14 09:29:24 | 16 | ||||||||||
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Multivariate Exploratory Linear Optimized Decomposition into Independent Components Resource Report Resource Website 10+ mentions |
Multivariate Exploratory Linear Optimized Decomposition into Independent Components (RRID:SCR_024916) | MELODIC | software application, software resource | Software tool to use at both the subject and group level to decompose FMRI data into time courses and spatial maps using Independent Component Analysis. Used to decompose single or multiple 4D data sets into different spatial and temporal components. | Independent Component Analysis, decompose FMRI data, decompose single or multiple 4D data sets, spatial and temporal components, | is a plug in for: FSL | Free, Freely available | SCR_024916 | MELODIC:Multivariate Exploratory Linear Optimized Decomposition into Independent Components | 2026-08-14 09:29:07 | 32 | ||||||||
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NCI Center for Cancer Research Genomics Core Facility Resource Report Resource Website 1+ mentions |
NCI Center for Cancer Research Genomics Core Facility (RRID:SCR_024754) | service resource, access service resource, core facility | Core provides access to genomic technologies and Next-Generation Sequencing. Provides DNA and RNA quality control services, user accessible instrumentation, training, consultation services, bioinformatics support, and secure data delivery management. | NIH, genomics core, genomics, |
is listed by: ABRF CoreMarketplace has parent organization: National Cancer Institute |
Open | ABRF_2562 | https://coremarketplace.org/?FacilityID=2562&citation=1 | SCR_024754 | , NCI CCR Genomics Core, National Cancer Institute Center for Cancer Research Genomics Core, NCI Center for Cancer Research Genomics Core | 2026-08-14 09:29:05 | 1 | |||||||
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jMORP Resource Report Resource Website 100+ mentions |
jMORP (RRID:SCR_024755) | database, data or information resource | Japanese multi omics reference panel. Provides multidimensional approach to diversity of Japanese population. Public database for plasma metabolome and proteome analyses. Updated to metabolome, genome, transcriptome, metagenome, number of samples, analysis methods of each dataset, expanding links between each layer and links between hierarchies. | Japanese population, multi omics reference panel, plasma metabolome and proteome analyses, metabolome, genome, transcriptome, metagenome, datasets, samples, analysis, | Japan Agency for Medical Research and Development | DOI:10.1093/nar/gkad978 | Restricted | SCR_024755 | 2026-08-14 09:28:51 | 109 | |||||||||
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Beth Israel Deaconess Medical Center Functional Genomics and Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
Beth Israel Deaconess Medical Center Functional Genomics and Bioinformatics Core Facility (RRID:SCR_024877) | service resource, access service resource, core facility | Core provides consultative, laboratory, and bioinformatic services for next generation sequencing based applications.Core services include Pre- and post-experimental consultation to determine proper experimental approach, design, and interpretation; Standalone RNA preparation, RNA and DNA Bioanalyzer analyses, chromatin shearing/shear checks; Sample quality assessment of DNA and RNA using the BioAnalyzer and Qubit assays; Library preparation, sequencing, and analysis of transcriptomes (RNA-seq), cistromes (ChIP-seq), chromatin accessibility (ATAC-seq); Standalone sequencing on NextSeq500; Multiplexed 10x Single Cell/Nucleus Library RNA-seq Droplet generation, Library Preparation; Basic data analysis: quality assessment and normalization, genomic alignment, differential expression/enrichment, functional enrichment analysis (overrepresentation and GSEA), sample clustering, and motif enrichment; Bespoke data analysis, including integration of complex ChIP-seq and RNA-seq data sets, single-cell sequencing analyses.Core is located on the 7th floor of the Center for Life Sciences building in the Longwood Medical area (3 Blackfan Circle, CLS-728). | ABRF, next generation sequencing services, RNA, DNA, chromatin shearing, library preparation; basic data analysis, |
is listed by: ABRF CoreMarketplace has parent organization: Harvard Medical School; Massachusetts; USA |
Open | ABRF_2604 | https://coremarketplace.org/?FacilityID=2604&citation=1 | SCR_024877 | Functional Genomics and Bioinformatics Core | 2026-08-14 09:29:07 | 2 | |||||||
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Tulane University TNBRC Animal Resources Resource Report Resource Website 1+ mentions |
Tulane University TNBRC Animal Resources (RRID:SCR_024911) | topical portal, access service resource, organism-related portal, portal, data or information resource, service resource, core facility | Unit is part of Tulane National Primate Research Center. Provides services including routine husbandry care for animal colonies, reporting of animals abnormal clinical signs or activities to veterinary medical staff and faculty. Animal Care Technicians provide support during diagnostic and therapeutic procedures and administration of preventive medicine program. Coordinates its activities with research personnel to provide assistance, equipment and support for their work. After hours care includes administration of treatments, collection of biologic samples for research activities and observation of animals. TNPRC facilities are accredited by Association for Assessment and Accreditation of Laboratory Animal Care International (AAALAC). | ABRF, Tulane National Biomedical Research Center, husbandry care, support during diagnostic and therapeutic procedures and administration, treatments, biologic samples collection, AAALAC, |
is listed by: ABRF CoreMarketplace has parent organization: Tulane University; Louisiana; USA |
Restricted | ABRF_2631 | https://coremarketplace.org/?FacilityID=2631&citation=1 | SCR_024911 | , Tulane University TNBRC Animal Resources Core Facility, Tulane University Tulane National Biomedical Research Center Animal Resources Core Facility | 2026-08-14 09:28:53 | 1 | |||||||
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PS:Power and Sample Size Calculation Resource Report Resource Website 10+ mentions |
PS:Power and Sample Size Calculation (RRID:SCR_024912) | PS | software application, software resource | Software application as interactive program for performing power and sample size calculations. Can determine the sample size needed to detect specified alternative hypothesis with required power, the power with which specific alternative hypothesis can be detected with given sample size, or the specific alternative hypotheses that can be detected with given power and sample size. | interactive program for performing power and sample size calculations, power and sample size calculations, | PMID:9875838 | Free, Available for download, Freely available | SCR_024912 | 2026-08-14 09:29:25 | 16 | |||||||||
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Daphnia Atlas Resource Report Resource Website 1+ mentions |
Daphnia Atlas (RRID:SCR_024913) | data or information resource, reference atlas, atlas | Whole organism atlas utilizing 2D and 3D imaging. Atlas at cellular resolution serves as foundation for characterization of tissue and cellular change in Daphnia. | Whole organism atlas, Daphnia, characterization of tissue and cellular change, 2D imaging, 3D imaging, | Penn State Human Health and Environment Seed Grant ; Pennsylvania Department of Health Commonwealth Universal Research Enhancement Program Grant ; NIH Office of the Director R24OD18559; European Unions Horizon 2020 |
DOI:10.1101/2022.03.09.483544 | Free, Freely available, | SCR_024913 | 2026-08-14 09:29:07 | 1 | |||||||||
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WaybackMachine Resource Report Resource Website 1+ mentions |
WaybackMachine (RRID:SCR_025022) | data or information resource, software resource, data access protocol, web service | Digital library of Internet sites and other cultural artifacts in digital form. Web history is accessible through Wayback Machine and they work with 1,200+ library and other partners through Archive-It program to identify more important web pages. | Digital library of internet sites, cultural artifacts in digital form, identify web pages, | Free, Freely available | SCR_025022 | Internet Archive WaybackMachine | 2026-08-14 09:29:09 | 9 | ||||||||||
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PhaSeDis Resource Report Resource Website 1+ mentions |
PhaSeDis (RRID:SCR_024963) | database, data or information resource | Manually curated database of relations between phase separation and diseases. | Manually curated database, relations between phase separation and diseases, | National Key Research and Development Program of China ; National Natural Science Foundation of China |
PMID:33126250 | Free, Freely available | SCR_024963 | MloDisDB | 2026-08-14 09:29:26 | 4 | ||||||||
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JStor Global Plants Resource Report Resource Website 100+ mentions |
JStor Global Plants (RRID:SCR_025018) | database, data or information resource | Database of digitized plant specimens. Used for finding plant name, type, specimens and their label data.The collection also includes partner contributed reference works and primary sources. Used for research and teaching in botany, ecology, and conservation studies. | digitized plant specimens, botany, ecology, conservation studies, plant data collection, | Restricted | SCR_025018 | Global Plants | 2026-08-14 09:29:09 | 159 | ||||||||||
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PhaSepDB Resource Report Resource Website 10+ mentions |
PhaSepDB (RRID:SCR_024964) | database, data or information resource | Provides a collection of manually curated phase separation (PS) proteins and Membraneless organelles (MLOs) related proteins. Annotated phase separation-related proteins with droplet states, co-phase separation partners and other experimental information. | Membraneless organelles related proteins, collection of manually curated phase separation proteins, phase separation proteins, | National Key Research and Development Program of China ; National Natural Science Foundation of China |
DOI:10.1093/nar/gkac783 | Free, Freely available | SCR_024964 | 2026-08-14 09:29:08 | 36 |
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