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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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NextDenovo Resource Report Resource Website 100+ mentions |
NextDenovo (RRID:SCR_025033) | data processing software, software application, data analysis software, source code, software resource | Software error correction and accurate assembly tool for noisy long reads. De novo assembler for long reads. String graph-based de novo assembler for long reads like CLR, HiFi and ONT. | De novo assembler, error correction, accurate assembly, noisy long reads, | DOI:10.1101/2023.03.09.531669 | Free, Available for download, Freely available | SCR_025033 | 2026-08-14 09:29:09 | 323 | ||||||||||
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University of Colorado Boulder Geomicrobiology Lab Core Facility Resource Report Resource Website 1+ mentions |
University of Colorado Boulder Geomicrobiology Lab Core Facility (RRID:SCR_025034) | GEOM | service resource, access service resource, core facility | Microbial culturing facility focused on growing microorganisms with diverse physiologies from photosynthesis to methanogenesis. | microbiology, culturing, bacteria, archaea, aerobes, anaerobes, phototrophs, heterotrophs |
is listed by: ABRF CoreMarketplace has parent organization: University of Colorado Boulder; Colorado; USA |
Open | ABRF_2665 | https://coremarketplace.org/?FacilityID=2665&citation=1 | SCR_025034 | , Geomicrobial Physiology and Evolution Lab, University of Colorado Boulder GeoMicrobial Co-Culturing Lab | 2026-08-14 09:28:55 | 3 | ||||||
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Sorting long Reads of Y or other sex-limited chromosome Resource Report Resource Website 1+ mentions |
Sorting long Reads of Y or other sex-limited chromosome (RRID:SCR_025036) | SRY | source code, software application, software resource | Software application for sorting long-read of sex-limited (Y or W) chromosome. Used to identify male specific k-mers based on population data. | sorting long-read of sex-limited chromosome, identify male specific k-mers, population data | Free, Available for download, Freely available | SCR_025036 | 2026-08-14 09:29:28 | 1 | ||||||||||
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Wistar Institute Molecular Screening and Protein Expression Core Facility Resource Report Resource Website 1+ mentions |
Wistar Institute Molecular Screening and Protein Expression Core Facility (RRID:SCR_024978) | service resource, access service resource, core facility | Facility enables to discover molecular, genetic, and small molecule compounds suitable to study functions of poorly understood proteins, signaling pathways, and cells in complex biological processes relevant to human physiology and disease; provides technical assistance with viral vector preparation and expression and purification of recombinant proteins; fosters collaborations. Staff will also develop and implement new technology as needed. Education and training is also available. Provides opportunities to develop new innovative basic and translational research, preliminary data for hypothesis driven research grant applications, and public-private partnerships. | ABRF, Molecular Screening and Protein Expression, discover small molecule compounds, |
is listed by: ABRF CoreMarketplace has parent organization: Wistar Institute |
Open | ABRF_352 | https://coremarketplace.org/?FacilityID=352&citation=1 | SCR_024978 | The Wistar Institute Molecular Screening and Protein Expression, Molecular Screening and Protein Expression | 2026-08-14 09:29:26 | 1 | |||||||
|
Open Data LMU Resource Report Resource Website 1+ mentions |
Open Data LMU (RRID:SCR_025005) | portal, web service, data or information resource, data access protocol, software resource, organization portal | Data publication platform for publication and hosting of research data. Data repository contains open access journals published at Ludwig-Maximillians University, Munich, Germany. Server provides direct access to research data sets produced by projects at LMU. Open Journals LMU. Open Data LMU. | Open Journals LMU, publication platform, publications, hosting research data, open access journals, LMU projects, LMU, | Free, Freely available | SCR_025005 | Open Data Ludwig-Maximillians University | 2026-08-14 09:28:54 | 3 | ||||||||||
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MIKAIA Resource Report Resource Website 1+ mentions |
MIKAIA (RRID:SCR_025081) | data processing software, software application, software resource, image analysis software | Software image analysis tool for digital pathology and spatial biology researchers. | image analysis, digital pathology, spatial biology, | Available for download | https://websites.fraunhofer.de/smart-sensing-insights/mikaia-university/ | SCR_025081 | 2026-08-14 09:29:28 | 2 | ||||||||||
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Stanford University Cosmogenic Isotope Lab Core Facility Resource Report Resource Website 1+ mentions |
Stanford University Cosmogenic Isotope Lab Core Facility (RRID:SCR_025082) | SCI-Lab | service resource, access service resource, core facility | Core for understanding Earth surface processes in bedrock, soil, water, and sediment. Interactions between cosmic rays and Earth’s upper atmosphere create unique isotopes both in the atmosphere and in materials on Earth’s surface. By assessing the ratios and/or concentrations of these isotopes, we can get a deeper insight into the exposure age, soil production rate, catchment-averaged erosion, and processes of Earth’s varied landscapes. | ABRF, Earth surface processes, bedrock, soil, water, sediment, assessing isotopes ratios, assessing isotopes concentrations, |
is listed by: ABRF CoreMarketplace has parent organization: Stanford University; Stanford; California |
ABRF_2666 | https://coremarketplace.org/?FacilityID=2666&citation=1 | SCR_025082 | Stanford Cosmogenic Isotope Lab | 2026-08-14 09:29:09 | 1 | |||||||
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University of Florida Systems Physiology and Omics Core Facility Resource Report Resource Website 1+ mentions |
University of Florida Systems Physiology and Omics Core Facility (RRID:SCR_025083) | service resource, access service resource, core facility | Provides specialized resources and expertise to support scientists that want to incorporate systemic measures of mouse activity, metabolism and feeding. The systems are also embedded within light regulated environments to capture circadian, time of day, based outcomes.Supports scientists wanting to perform circadian type analyses with either pre-clinical or clinical time series data. Supports scientists wanting to incorporate -Omics measures into their studies with experience in genomics, proteomics and metabolomics assays/analyses. These services are available to support new investigators, early-stage investigators and current investigators in aging. | ABRF, systemic measures, mouse activity, metabolism, feeding, light regulated environments to capture circadian, |
is listed by: ABRF CoreMarketplace has parent organization: University of Florida; Florida; USA |
ABRF_2662 | https://coremarketplace.org/?FacilityID=2662&citation=1 | SCR_025083 | Systems Physiology and Omics Core, University of Florida Systems Physiology and Omics Core | 2026-08-14 09:28:55 | 3 | ||||||||
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University of Wisconsin-Madison Carbone Cancer Center Flow Laboratory Core Facility Resource Report Resource Website 1+ mentions |
University of Wisconsin-Madison Carbone Cancer Center Flow Laboratory Core Facility (RRID:SCR_025085) | service resource, access service resource, core facility | Facility provides technical and educational support for fluorescence based single cell analysis and isolation to further the characterization and understanding of cellular function, biomarkers, pathology, and treatment in basic, translational, and clinical research projects. | ABRF, fluorescence based single cell analysis, cell isolation, characterization and understanding of cellular function, | is listed by: ABRF CoreMarketplace | ABRF_2663 | https://coremarketplace.org/?FacilityID=2663&citation=1 | SCR_025085 | , UW Carbone Cancer Center Flow Lab, UWCCC Flow Cytometry Laboratory | 2026-08-14 09:29:29 | 4 | ||||||||
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Fslutils Resource Report Resource Website 1+ mentions |
Fslutils (RRID:SCR_024943) | data processing software, software application, software resource | Software application set of useful command line utilities which allow conversion, processing etc. of Analyze and Nifti format data sets. | FSL, conversion, processing, Analyze format data sets, Nifti format data sets, | is a plug in for: FSL | Free, Freely available, | SCR_024943 | FSLUTILS | 2026-08-14 09:29:26 | 7 | |||||||||
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Atlasquery Resource Report Resource Website 1+ mentions |
Atlasquery (RRID:SCR_024944) | software application, software resource | Software tool designed to allow command line interrogation of atlas images supplied with FSL. It takes as input the name of one of FSL atlases together with either coordinate of interest or mask. | FSL, atlas images, command line interrogation, FSL atlases, | is a plug in for: FSL | Free, Freely available | SCR_024944 | 2026-08-14 09:29:08 | 1 | ||||||||||
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RicePilaf Resource Report Resource Website 1+ mentions |
RicePilaf (RRID:SCR_024945) | source code, web application, software resource | Web app for post-GWAS/QTL analysis that performs slew of novel bioinformatics analyses to cross GWAS/QTL mapping results with host of publicly available rice databases. | bioinformatics analyses, GWAS/QTL mapping results, publicly available rice databases, | Free, Available for download, Freely available | SCR_024945 | Rice Post-GWAS/QTL Analysis | 2026-08-14 09:28:53 | 1 | ||||||||||
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Mammalian Stress Granules Proteome Resource Report Resource Website 1+ mentions |
Mammalian Stress Granules Proteome (RRID:SCR_024946) | MSGP | database, data or information resource | Database of protein components of mammalian stress granules. | protein components, mammalian stress granules, | Portuguese Science and Technology Foundation ; French Muscular Dystrophy Association and Ataxia UK |
PMID:30820574 | Free, Freely available | SCR_024946 | 2026-08-14 09:29:26 | 5 | ||||||||
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University of Nebraska Lincoln Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
University of Nebraska Lincoln Bioinformatics Core Facility (RRID:SCR_025011) | BCRF | service resource, access service resource, core facility | Core offers education, analysis, and computational services in the area of bioinformatics and computational biology. Offers initial consultations to help with experimental design and power analysis of 'omics data for grant submissions and bioinformatics needs for current projects. | ABRF, computational biology, bioinformatics services, |
is listed by: ABRF CoreMarketplace has parent organization: University of Nebraska; Nebraska; USA |
Open | ABRF_2632 | https://coremarketplace.org/?FacilityID=2632&citation=1 | SCR_025011 | , University of Nebraska�Lincoln UNL-Bioinformatics Core Research Facility, UNL-Bioinformatics Core Research Facility | 2026-08-14 09:29:08 | 2 | ||||||
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gensim Resource Report Resource Website 10+ mentions |
gensim (RRID:SCR_025099) | software toolkit, software resource, source code, software library | Software Python library for unsupervised topic modeling, document indexing, retrieval by similarity, and other natural language processing functionalities, using modern statistical machine learning. | unsupervised topic modeling, document indexing, retrieval by similarity, | Free, Available for download, Freely available | https://github.com/piskvorky/gensim | SCR_025099 | 2026-08-14 09:29:29 | 22 | ||||||||||
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GROMACS topology editors Resource Report Resource Website 1+ mentions |
GROMACS topology editors (RRID:SCR_025013) | gmxtras | software application, software resource | Software tool as set of Python scripts to modify GROMACS topology files, by adding content from different topology files and other GROMACS input files. Useful, particularly when system components are assembled outside of GROMACS, or in different steps within GROMACS. This helps prevent users from having to copy and paste significantly large blocks of text within topology files. | GROMACS, topology files, force fields, modify GROMACS topology files, | Free, Available for download, Freely available | SCR_025013 | 2026-08-14 09:29:27 | 2 | ||||||||||
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2FAST2Q Resource Report Resource Website 1+ mentions |
2FAST2Q (RRID:SCR_025017) | data processing software, software application, data analysis software, data analytics software, software resource, sequence analysis software | Software package for general purpose sequence search and counting program for FASTQ files. Python3 program that counts sequence occurrences in raw FASTQ files. Used for CRISPRi-Seq, and for extracting and counting any kind of information from Illumina reads, such as barcodes. | Python3, count sequence occurrences, raw FASTQ files, | Swiss National Science Foundation | PMID:36312750 | Free, Available for download, Freely available | https://github.com/veeninglab/2FAST2Q | SCR_025017 | 2026-08-14 09:29:27 | 1 | ||||||||
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PyContact Resource Report Resource Website 1+ mentions |
PyContact (RRID:SCR_025066) | data processing software, software application, data analysis software, software resource | Software tool for analysis of non-covalent interactions in molecular dynamics trajectories. Implemented in Python and is universally applicable to any kind of MD trajectory supported by MDAnalysis package. | non-covalent interactions, molecular dynamics trajectories, | is related to: MDAnalysis | German Research Foundation ; NIGMS P41 GM104601; NSF |
PMID:29414703 | Free, Available for download, Freely available, | https://github.com/maxscheurer/pycontact | SCR_025066 | 2026-08-14 09:29:09 | 3 | |||||||
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VirHost Resource Report Resource Website 1+ mentions |
VirHost (RRID:SCR_025061) | data processing software, software application, data analysis software, software resource, source code, sequence analysis software | Software tool for predicting reservoir hosts of RNA viruses through viral genomes. Takes complete RNA viral genomes as input and predicts natural reservoir host groups from kingdom level to order level. | predicts RNA viruses, viral genomes, RNA viral genomes, predicts natural reservoir host groups, | Hong Kong Research Grants Council General Research Fund (GRF) [11206819; 11217521] |
Free, Available for download, Freely available | SCR_025061 | 2026-08-14 09:29:28 | 1 | ||||||||||
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Geisel School of Medicine at Dartmouth DCC Irradiation, Imaging, Microscopy and Animal Cancer Models Core Facility Resource Report Resource Website 10+ mentions |
Geisel School of Medicine at Dartmouth DCC Irradiation, Imaging, Microscopy and Animal Cancer Models Core Facility (RRID:SCR_025077) | service resource, access service resource, core facility | Integrated core offers services in Irradiation, pre-clinical imaging of small and large animals, light and electron microscopy, large and small animal cancer models. Irradiation Section assists investigators in radiation treatment planning and delivery of ionizing irradiation to cells, rodents and large animals with engineered, transplanted or spontaneous tumors.Imaging Section provides technologies for non-invasive, whole-animal imaging of animals used in preclinical research studies. Microscopy Section provides access to point scanning confocal microscopy with Airyscan super resolution, conventional bright field and fluorescence light microscopy, high throughput live imaging, automated slide scanning and image analysis resources. Electron microscopy resource provides scanning transmission electron microscopy. Animal Cancer Models section supports generation and utilization of large and small animals for modeling cancer and other human diseases. Section has expertise in generating cancer models using wild type or genetically engineered animals in immunocompetent and immunocompromised backgrounds, as well as mice with humanized immune system. | ABRF, Irradiation, Imaging, Microscopy, Animal Cancer Models, |
is listed by: ABRF CoreMarketplace has parent organization: Dartmouth Medical School; New Hampshire; USA |
ABRF_2657 | https://coremarketplace.org/?FacilityID=2657&citation=1 | SCR_025077 | , Microscopy and Animal Cancer Models, Geisel School of Medicine at Dartmouth DCC Irradiation, Imaging, DCC-Irradiation | 2026-08-14 09:28:55 | 12 |
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