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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Ohio State University Campus Microscopy and Imaging Core Facility Resource Report Resource Website 10+ mentions |
Ohio State University Campus Microscopy and Imaging Core Facility (RRID:SCR_025078) | service resource, access service resource, core facility | Offers services from sample preparation to image processing.Provides instrumentation for use such as electron microscopy, light microscopy, and access to other instrumentation for use in sample prep. | ABRF, microscopy, imaging, image processing, sample preparation, |
is listed by: ABRF CoreMarketplace has parent organization: Ohio State University; Ohio; USA |
ABRF_2659 | https://coremarketplace.org/?FacilityID=2659&citation=1 | SCR_025078 | Ohio State University Campus Microscopy and Imaging Facility, , OSU-Campus Microscopy & Imaging Facility | 2026-08-14 09:29:28 | 15 | ||||||||
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DualRegression Resource Report Resource Website 1+ mentions |
DualRegression (RRID:SCR_024940) | data processing software, software application, data analysis software, software resource | Software application used as part of group level resting state analysis to identify subject specific contributions to group level Independent Component Analysis. | group level resting state analysis, identify subject specific contributions, group level Independent Component Analysis, ICA | is a plug in for: FSL | Free, Freely available | SCR_024940 | 2026-08-14 09:28:53 | 4 | ||||||||||
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Genotype Sparse Compression Resource Report Resource Website 1+ mentions |
Genotype Sparse Compression (RRID:SCR_025071) | GSC | software application, software resource | Software tool for lossless compression of VCF files, designed to efficiently store and manage VCF files in compressed format. It accepts VCF/BCF files as input and utilizes advanced compression techniques to significantly reduce storage requirements while ensuring fast query capabilities. | lossless compression of VCF files, store and manage VCF files, compressed format, | SCR_025071 | Genotype Sparse Compression (GSC) | 2026-08-14 09:28:55 | 1 | ||||||||||
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Penn State Hershey College of Medicine Atomic Force Microscopy Core Facility Resource Report Resource Website 1+ mentions |
Penn State Hershey College of Medicine Atomic Force Microscopy Core Facility (RRID:SCR_025075) | service resource, access service resource, core facility | Provides College of Medicine research community with access to atomic force microscopy equipment and expertise. | ABRF, atomic force microscopy services, |
is listed by: ABRF CoreMarketplace has parent organization: Pennsylvania State Hershey College of Medicine; Pennsylvania; USA |
NIH Office of the Director S10 OD030279 | ABRF_2637 | https://coremarketplace.org/?FacilityID=2637&citation=1 | SCR_025075 | Hershey College of Medicine Atomic Force Microscopy Core Facility, Atomic Force Microscopy Core | 2026-08-14 09:29:28 | 3 | |||||||
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Tract Based Spatial Statistics Resource Report Resource Website 10+ mentions |
Tract Based Spatial Statistics (RRID:SCR_024932) | TBSS | data processing software, software application, software resource, image analysis software | Software tool to improve sensitivity, objectivity and interpretability of analysis of multi-subject diffusion imaging studies. | analysis of multi-subject diffusion imaging studies, imaging analysis, imaging, | is a plug in for: FSL | EPSRC ; BBSRC ; MRC ; Wellcome Trust ; Multiple Sclerosis Society |
PMID:16624579 | Free, Freely available | SCR_024932 | , Tract-Based Spatial Statistics, TBSS:Tract-Based Spatial Statistics | 2026-08-14 09:29:25 | 11 | ||||||
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XTRACT Resource Report Resource Website 1+ mentions |
XTRACT (RRID:SCR_024933) | software application, software resource | Software command line tool for automated tractography. Standardised protocols for automated tractography in human and macaque brain. | automated tractography, tractography, human, macaque, brain | is a plug in for: FSL | Medical Research Council PhD Studentship UK ; Marie Skłodowska-Curie Individual Fellowship Grant ; Biotechnology and Biological Sciences Research Council ; Netherlands Organization for Scientific Research NWO Netherlands ; Sir Henry Dale Wellcome Trust Fellowship UK ; MRC Career Development Fellowship UK ; Wellcome Trust Collaborative Award UK ; UK Engineering and Physical Sciences Research Council ; Wellcome Trust grant UK ; Human Connectome Project ; NIMH 1U54MH091657; McDonnell Center for Systems Neuroscience at Washington University ; NIH ; UK Biobank Resource ; Wellcome Trust |
PMID:32407993 | Free, Freely available | SCR_024933 | 2026-08-14 09:29:07 | 4 | ||||||||
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eddy Resource Report Resource Website 1+ mentions |
eddy (RRID:SCR_024934) | data processing software, software application, software resource | Software tool for correcting eddy currents and movements in diffusion data. Used to predict undistorted data, to which actual observed images can be aligned, to estimate and to correct for volume-to-volume movement and off-resonance fields, to signal dropout caused by movement during diffusion encoding, within-volume movement and movement-induced changes of susceptibility-induced off-resonance field. In addition to correcting for these effects, the output from this framework offers description of off resonance and subject movement effects present in uncorrected data. | correcting eddy currents and movements, diffusion data correction, | is a plug in for: FSL | Free, Freely available | SCR_024934 | 2026-08-14 09:28:53 | 9 | ||||||||||
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randomise Resource Report Resource Website 10+ mentions |
randomise (RRID:SCR_024937) | software application, software resource | Software tool for nonparametric permutation inference on neuroimaging data. | nonparametric permutation inference, neuroimaging data | is a plug in for: FSL | PMID:24530839 | Free, Freely available | SCR_024937 | 2026-08-14 09:28:53 | 12 | |||||||||
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ML Commons Resource Report Resource Website 1+ mentions |
ML Commons (RRID:SCR_025043) | data or information resource, portal, consortium, organization portal | Artificial Intelligence engineering consortium, built on philosophy of open collaboration to improve AI systems to measure and improve accuracy, safety, speed and efficiency of AI technologies helping companies and universities around the world. Community-driven and community-funded effort. | Open AI Engineering Consortium, Machine learning, Intelligence BRain Analysis through Images and Networks (iBRAIN) | Free, Freely available | SCR_025043 | 2026-08-14 09:29:09 | 2 | |||||||||||
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Louisiana State University Health Sciences Shreveport INLET High Throughput Screening Core Facility Resource Report Resource Website 1+ mentions |
Louisiana State University Health Sciences Shreveport INLET High Throughput Screening Core Facility (RRID:SCR_024990) | service resource, access service resource, core facility | Facility focused on discovery and development of drugs and genetic targets that affect human diseases including cancer, fungal, bacterial and viral infection, neurological disorders and cardiovascular disorders. Both live and fixed high throughput microscopy is performed using Incucyte S3, Incucyte SX5 and Cellomics ArrayScan VTI HCS Reader. Provides expertise and protocol design for variety of assays including: Cell proliferation, Cell viability, Phagocytosis, Chemotaxis, Cell migration/invasion, 3D spheroid growth. INLET Core provides cutting edge, multiplexed functional imaging platforms to perform multi-well high-throughput live-cell imaging and analysis assays., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | ABRF, Cell proliferation, Cell viability, Phagocytosis, Chemotaxis, Cell migration/invasion, 3D spheroid growth, INLET Core, multiplexed functional imaging platforms, multi-well high-throughput live-cell imaging, analysis assays, |
is listed by: ABRF CoreMarketplace has parent organization: Louisiana State University; Louisiana; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | ABRF_2623 | https://coremarketplace.org/?FacilityID=2623&citation=1 | SCR_024990 | High Throughput Screening - INLET, Innovative North Louisiana Experimental Therapeutics program (INLET) | 2026-08-14 09:29:08 | 3 | |||||||
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ntsm Resource Report Resource Website 1+ mentions |
ntsm (RRID:SCR_024994) | source code, software application, software resource | Software alignment free, ultra low coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap detection. Used to count number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to compute the probability that sample are of the same origin to discover incongruent samples or sample swaps. | intraspecies sample comparison, sample comparison, specific k-mers within sequence data count, sample swap detection, | DOI:10.1101/2023.11.01.565041 | Free, Available for download, Freely available, | SCR_024994 | ntsm: nucleotide sequence sample matcher | 2026-08-14 09:28:54 | 2 | |||||||||
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snm3C Pipeline Resource Report Resource Website 1+ mentions |
snm3C Pipeline (RRID:SCR_025041) | snM3C | data processing software, software application, software resource | Software open-source, cloud-optimized computational workflow for processing single-nucleus methylome and chromatin contact (snm3C) sequencing data. The workflow is designed to demultiplex and align raw sequencing reads, call chromatin contacts, and generate summary metrics. | data processing, single-nucleus methylome data, single-cell data, chromatin contact data, single-cell methylome and chromatin contact sequencing data, |
is organization facet of: BICCN is organization facet of: BRAIN Initiative Cell Atlas Network |
Free, Freely available | https://github.com/broadinstitute/warp/tree/master/pipelines/skylab/snM3C | SCR_025041 | , Single Nucleus Methly-Seq and Chromatin Capture, single-nucleus Methylome and Chromatin Contact, Single Nucleus Methly-Seq and Chromatin Capture (snM3C) | 2026-08-14 09:28:55 | 2 | |||||||
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EukRep Resource Report Resource Website 10+ mentions |
EukRep (RRID:SCR_024985) | data processing software, software application, data analysis software, software resource, sequence analysis software | Software tool as classifier that utilizes k-mer composition of assembled sequences to identify eukaryotic genome fragments prior to gene prediction. Used for eukaryotic sequence identification. Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets. | Classification of Eukaryotic and Prokaryotic sequences, metagenomic datasets, identify genome fragments, sequence identification, | National Science Foundation Graduate Research Fellowship ; Sloan Foundation ; NSF Sustainable Chemistry ; Office of Science of the US Department of Energy ; German Science Foundation |
PMID:29496730 | Free, Available for download, Freely available | SCR_024985 | 2026-08-14 09:28:54 | 15 | |||||||||
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Numba Resource Report Resource Website 1+ mentions |
Numba (RRID:SCR_025056) | software application, software resource | Open source JIT compiler that translates subset of Python and NumPy code into fast machine code. Can compile large subset of numerically-focused Python, including many NumPy functions. Has support for automatic parallelization of loops, generation of GPU-accelerated code, and creation of ufuncs and C callbacks. | Accelerate Python functions, JIT compiler, translate subset of Python and NumPy code into fast machine code, | Anaconda ; Inc. |
Free, Available for download, Freely available, | https://numba.pydata.org, https://github.com/numba/numba/blob/c6da26929c7fc18b06dd2e5fc86982cea828df6c/docs/source/index.rst | SCR_025056 | 2026-08-14 09:29:28 | 8 | |||||||||
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Abaqus FEA Resource Report Resource Website 10+ mentions |
Abaqus FEA (RRID:SCR_024997) | software application, software resource | Software suite for finite element analysis and computer aided engineering. | Simulia, finite element analysis, computer aided engineering, | Restricted | https://en.wikipedia.org/wiki/Abaqus | SCR_024997 | Simulia Abaqus FEA | 2026-08-14 09:29:27 | 28 | |||||||||
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University of Pittsburgh Dietrich School of Arts and Sciences Pitt Isotope Tracer Lab Core Facility Resource Report Resource Website 1+ mentions |
University of Pittsburgh Dietrich School of Arts and Sciences Pitt Isotope Tracer Lab Core Facility (RRID:SCR_025145) | PIT | service resource, access service resource, core facility | One of several isotope labs in Department of Geology and Environmental Science formerly known as Regional Stable Isotope Lab for Earth and Environmental Science Research, has capacity for wide variety of isotopic measurements in multitude of sample media. Capabilities include: Nitrate (?15N, ?18O, D17O);Greenhouse and trace gases like carbon dioxide (?13C, ?18O), nitrous oxide (?15N, ?18O), methane (?13C); Nitrogen, carbon, and sulfur (?15N, ?13C, ?34S) in organic and other solid materials (e.g., biota, soils);Ammonium (?15N); Dry reactive nitrogen deposition (?15N-NH3, ?15-NO2, and ?15N-HNO3); and Carbonates (?13C, ?18O). | ABRF, isotope tracer, isotopic measurements, organic and other solid materials, greenhouse and trace gases, |
is listed by: ABRF CoreMarketplace has parent organization: University of Pittsburgh; Pennsylvania; USA |
ABRF_2692 | https://coremarketplace.org/?FacilityID=2692&citation=1 | SCR_025145 | University of Pittsburgh Dietrich School Pitt Isotope Tracer Lab | 2026-08-14 09:29:30 | 1 | |||||||
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University of Pittsburgh Advanced Imaging Center Core Facility Resource Report Resource Website 1+ mentions |
University of Pittsburgh Advanced Imaging Center Core Facility (RRID:SCR_025139) | AIC | service resource, access service resource, core facility | Core provides instrumentation and expertise for high-field Preclinical Magnetic Resonance Imaging and Magnetic Resonance Microscopy. Facility has instruments: Bruker 9.4 Tesla/30 cm AVANCE 3 HD scanner and Bruker 11.7 Tesla 89 mm AVANCE 3 HD micro imaging system. | ABRF, Preclinical Magnetic Resonance Imaging, Magnetic Resonance Microscopy, |
is listed by: ABRF CoreMarketplace has parent organization: University of Pittsburgh; Pennsylvania; USA |
ABRF_2687 | https://coremarketplace.org/?FacilityID=2687&citation=1 | SCR_025139 | UPitt-Advanced Imaging Center, University of Pittsburgh UPitt-Advanced Imaging Center | 2026-08-14 09:28:56 | 8 | |||||||
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Adult Zebrafish Brain Gene Expression Database Resource Report Resource Website 1+ mentions |
Adult Zebrafish Brain Gene Expression Database (RRID:SCR_025122) | database, data or information resource | Collection of in situ hybridization data of gene expression in the brain of adult fish. Data can be viewed and downloaded. | in situ hybridization data, gene expression, adult fish brain, | Free, Freely available | SCR_025122 | 2026-08-14 09:29:29 | 1 | |||||||||||
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University of Pittsburgh Nanoscale Fabrication and Characterization Core Facility Resource Report Resource Website 1+ mentions |
University of Pittsburgh Nanoscale Fabrication and Characterization Core Facility (RRID:SCR_025124) | NFCF | service resource, access service resource, core facility | Core supports fabrication and characterization of nanoscale materials and structures, and integration of devices at all length scales. Houses advanced equipment with core nano-level capability for fabrication and characterization, including electron-beam lithography system, dual-beam system, plasma etching, thin film deposition, TEM, multifunctional scanning probe station, modular XRD, and more. | ABRF, fabrication and characterization of nanoscale materials and structures, |
is listed by: ABRF CoreMarketplace has parent organization: University of Pittsburgh; Pennsylvania; USA |
ABRF_2671 | https://coremarketplace.org/?FacilityID=2671&citation=1 | SCR_025124 | University of Pittsburgh Nanoscale Fabrication and Characterization Core Facility | 2026-08-14 09:28:56 | 3 | |||||||
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University of Pittsburgh Dietrich School X-ray Crystallography Core Facility Resource Report Resource Website 1+ mentions |
University of Pittsburgh Dietrich School X-ray Crystallography Core Facility (RRID:SCR_025125) | service resource, access service resource, core facility | X-Ray Diffraction Facility located in Chemistry Instrumentation Center is equipped with Bruker X8 Prospector Ultra with Copper ImuS micro-focus X-ray source and Bruker D8 Venture Dual source (Molybdenum and Copper micro-focus X-ray tubes) diffractometer with Photon III CPAD detector. Data can be collected at nitrogen-cooled temperatures as low as 90K. Core provides sample submission services for small molecule crystalography. | ABRF, X-Ray Diffraction, diffractometer, small molecule crystalography, crystalography |
is listed by: ABRF CoreMarketplace has parent organization: University of Pittsburgh; Pennsylvania; USA |
Open | ABRF_2674 | https://coremarketplace.org/?FacilityID=2674&citation=1 | SCR_025125 | University of Pittsburgh Dietrich School X-ray Crystallography Facility | 2026-08-14 09:29:29 | 1 |
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