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https://researchservices.pitt.edu/facilities/materials-characterization-lab
Facility maintains large array of instrumentation for production and analysis of complex materials, including nanoparticles, thin films, polymers, ceramics, and molecular electronics.Oversees operations of Department Biological Instrumentation Cluster which provides access to specialized equipment used in molecular biology and biological chemistry.
Proper citation: University of Pittsburgh Dietrich School Materials Characterization Laboratory Core Facility (RRID:SCR_025127) Copy
https://www.pediatrics.pitt.edu/research/cores-and-research-support/cell-imaging-core-laboratory
Core for image based analysis, laser capture microdissection, and live cell fluorescence imaging. Provides range of consultation and laboratory services performed by core staff. Users training is available.Cell and Tissue imaging on confocal microscopes including Zeiss LSM 710, Leical Sp8 and Leica Stellaris.
Proper citation: University of Pittsburgh School of Medicine Cell Imaging Core Facility (RRID:SCR_025132) Copy
Core provides access to characterization and process instrumentation. Expert staff provides assistance and guidance. Services include electron microscopy and analysis (SEM, TEM, FIB, EBSD, WDS), microelectronic device fabrication (7000 sq ft cleanroom, Class 100-1000), X-ray computed tomography (CT), particle system characterization (size, zeta potential, surface area, porosity, rheology), X-ray diffraction, surface analysis (AFM, profilometry, XPS, Auger), spectroscopy (UV/Vis with integrating sphere, FTIR/NIR with micro capability and micro-Raman).
Proper citation: University of Florida Herbert Wertheim College of Engineering Research Service Centers Core Facility (RRID:SCR_025135) Copy
Gnotobiotic Animal Core Laboratory is a BSL2-compliant mouse facility providing isolators for studies requiring a controlled microbiotic environment. All husbandry and upkeep services are provided. Additional specialized support is also available.
Proper citation: University of Pittsburgh School of Medicine Gnotobiotic Animal Core Facility (RRID:SCR_025220) Copy
Software suite of open source Python modules, data sets, and tutorials supporting research and development in Natural Language Processing. Platform for building Python programs to work with human language data. Provides interfaces to corpora and lexical resources such as WordNet, along with suite of text processing libraries for classification, tokenization, stemming, tagging, parsing, and semantic reasoning, wrappers for industrial strength NLP libraries, and active discussion forum.
Proper citation: nltk (RRID:SCR_025101) Copy
Health Sciences Mass Spectrometry Core provides liquid chromatography high resolution mass spectrometry (LC-HRMS) services for metabolomics, lipidomics and proteomics. Expert staff provide assistance throughout the full lifespan of all projects from experimental design and sample preparation through statistical analysis and interpretation of datasets.
Proper citation: University of Pittsburgh Health Sciences Mass Spectrometry Core Facility (RRID:SCR_025222) Copy
https://www.pediatrics.pitt.edu/research/cores-and-research-support/flow-cytometry-core
Flow Cytometry Core at John G. Rangos Sr. Research Center is a BSL2+ compliant cytometry analysis and sorting facility located at the John G. Rangos Sr. Research Center in Lawrenceville serving investigators from across the University of Pittsburgh.
Proper citation: University of Pittsburgh School of Medicine Flow Cytometry Core Facility (RRID:SCR_025223) Copy
https://github.com/dieterich-lab/JACUSA2
Software tool to detect single nucleotide variants by comparing data from next-generation sequencing experiments. Variant caller to detect single nucleotide variant positions from comparing RNA-DNA and/or RNA-RNA sequencing samples. JACUSA2 is one-stop solution to detect single nucleotide variants and reverse transcriptase induced arrest events in Next-generation sequencing data.
Proper citation: JACUSA2 (RRID:SCR_025104) Copy
https://github.com/microsoft/SEAL
Software homomorphic encryption library. C++ FHE library implementing BFV and CKKS schemes. Allows computations to be performed directly on encrypted data. This enables software engineers to build end-to-end encrypted data storage and computation services where the customer never needs to share their key with the service.
Proper citation: Microsoft SEAL (RRID:SCR_025184) Copy
https://www.structbio.pitt.edu/index.php/facilities/cryoem
Facility provides access to cutting edge instrumentation for high resolution structural analysis of proteins, protein complexes, viruses, macromolecular assemblies, cellular organelles, and bacterial cells., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: University of Pittsburgh Cryo-electron Microscopy Core Facility (RRID:SCR_025216) Copy
Core offers services for custom synthesis and characterization of peptides, peptoids and small molecule constructs. The facility has extensive capabilities for technologically advanced custom modifications such as bioconjugations and targeted therapeutic strategies. State of the art HPLC and mass spectrometry capabilities as well as services in support of protein, siRNA, antibody and small molecule quantification and characterization are available
Proper citation: University of Pittsburgh Peptide and Peptoid Synthesis Core Facility (RRID:SCR_025219) Copy
Core offers single cell sequencing. Provides analysis of transcriptomics, proteomics and epigenomics at single cell level. Provides comprehensive approach for cell characterization and gene expression profiling. Services include single cell gene expression, immune profiling, ATAC, and multiome analysis.
Proper citation: University of Pittsburgh Single Cell Core Facility (RRID:SCR_025110) Copy
https://github.com/OpenMined/TenSEAL
Software library for doing homomorphic encryption operations on tensors built on Microsoft SEAL, with Python API.
Proper citation: TenSEAL (RRID:SCR_025198) Copy
https://github.com/fuyw-aisw/GALA
Software tool for protein function prediction. Extracts information from both protein sequences and structures, facilitating unified learning of protein structural representations. GALA incorporates domain discriminator conditioned on both representations and predicted probabilities, which undergoes adversarial training to ensure representation invariance across diverse environments.
Proper citation: GALA (RRID:SCR_025194) Copy
Open access knowledge base for microbial natural products discovery. Database of microbially derived natural product structures. Provides coverage of bacterial and fungal natural products to visualize chemical diversity. Includes compounds and contains referenced data for structure, compound names, source organisms, isolation references, total syntheses, and instances of structural reassignment. Interactive web portal permits searching by structure, substructure, and physical properties. Provides mechanisms for visualizing natural products chemical space and dashboards for displaying author and discovery timeline data. Atlas has been developed under FAIR principles.
Proper citation: Natural Products Atlas (RRID:SCR_025107) Copy
https://www.cdc.gov/nchs/nhis/data-questionnaires-documentation.htm
Collection of National Health Interview Survey (NHIS) data, questionnaires and related documents to monitor health of the United States population through collection and analysis of data on broad range of health topics.
Proper citation: Centers for Disease Control and Prevention NHIS Data, Questionnaires and Related Documentation (RRID:SCR_025162) Copy
https://my.creighton.edu/researchservices/corefacilities/histologycore/
Facility provides equipment and services for studies utilizing animal and human tissues. Services include Sample, Processing, Embedding, Sectioning, Histochemistry, Immunohistochemistry, Imaging, Microscopy. Equipment includes microtomes for paraffin sections, cryostat for frozen sections, vibratome for plastic sections, and Nikon Eclipse Ci-L microscope for brightfield and fluorescence applications.
Proper citation: Creighton University Histology Core Facility (RRID:SCR_025163) Copy
https://www.rad.pitt.edu/mrrc-home.html
Core is dedicated to development and application of magnetic resonance imaging and magnetic resonance spectroscopy for medical and biological research. MRRC is whole-body imaging capable with specialty in anatomical MRI imaging of brain, spine, extremities, liver, bladder as well as functional MRI to study cognitive, sensory, and motor function in the brain.
Proper citation: University of Pittsburgh Magnetic Resonance Research Center Core Facility (RRID:SCR_025215) Copy
https://github.com/KULeuven-COSIC/FINAL
Software C++ FHE library as fully homomorphic encryption scheme based on NTRU and LWE.
Proper citation: FINAL (RRID:SCR_025171) Copy
https://nbcc.lunenfeld.ca/facilities/flow-cytometry
Core provides flow cytometry analyzers and cell sorters, with specialty in image-based flow cytometry and cell sorting.Services include unassisted and full-service cell sorting, training on theory and on instruments, consultation on experiment design, protocol development, data analysis, manuscript preparation and grant submission. Applications include image-based analysis powered by machine learning on the Amnis ImageStream; image-based cell sorting using the BD BACS Discover S8; cell sorting for a variety of applications including multi-color sort for bulk culture, indexed cell sort into 96-well plates, cell cycle phase sort and primary tissue sorting for RNA or DNA analysis.
Proper citation: Lunenfeld-Tanenbaum Research Institute Network Biology Collaborative Centre Flow Cytometry Core Facility (RRID:SCR_025384) Copy
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