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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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University of Pittsburgh Dietrich School Materials Characterization Laboratory Core Facility Resource Report Resource Website 10+ mentions |
University of Pittsburgh Dietrich School Materials Characterization Laboratory Core Facility (RRID:SCR_025127) | MCL | service resource, access service resource, core facility | Facility maintains large array of instrumentation for production and analysis of complex materials, including nanoparticles, thin films, polymers, ceramics, and molecular electronics.Oversees operations of Department Biological Instrumentation Cluster which provides access to specialized equipment used in molecular biology and biological chemistry. | ABRF, production and analysis of complex materials, nanoparticles, thin films, polymers, ceramics, molecular electronics, |
is listed by: ABRF CoreMarketplace has parent organization: University of Pittsburgh; Pennsylvania; USA |
ABRF_2672 | https://coremarketplace.org/?FacilityID=2672&citation=1 | SCR_025127 | University of Pittsburgh Dietrich School Materials Characterization Laboratory | 2026-08-14 09:28:56 | 11 | |||||||
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University of Pittsburgh School of Medicine Cell Imaging Core Facility Resource Report Resource Website 1+ mentions |
University of Pittsburgh School of Medicine Cell Imaging Core Facility (RRID:SCR_025132) | service resource, access service resource, core facility | Core for image based analysis, laser capture microdissection, and live cell fluorescence imaging. Provides range of consultation and laboratory services performed by core staff. Users training is available.Cell and Tissue imaging on confocal microscopes including Zeiss LSM 710, Leical Sp8 and Leica Stellaris. | ABRF, laser capture microdissection, live cell fluorescence imaging, image analysis, |
is listed by: ABRF CoreMarketplace has parent organization: University of Pittsburgh; Pennsylvania; USA |
ABRF_2677 | https://coremarketplace.org/?FacilityID=2677&citation=1 | SCR_025132 | University of Pittsburgh Cell Imaging Core, Cell Imaging Core | 2026-08-14 09:29:30 | 2 | ||||||||
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University of Florida Herbert Wertheim College of Engineering Research Service Centers Core Facility Resource Report Resource Website 1+ mentions |
University of Florida Herbert Wertheim College of Engineering Research Service Centers Core Facility (RRID:SCR_025135) | service resource, access service resource, core facility | Core provides access to characterization and process instrumentation. Expert staff provides assistance and guidance. Services include electron microscopy and analysis (SEM, TEM, FIB, EBSD, WDS), microelectronic device fabrication (7000 sq ft cleanroom, Class 100-1000), X-ray computed tomography (CT), particle system characterization (size, zeta potential, surface area, porosity, rheology), X-ray diffraction, surface analysis (AFM, profilometry, XPS, Auger), spectroscopy (UV/Vis with integrating sphere, FTIR/NIR with micro capability and micro-Raman). | ABRF, characterization, process, instrumentation, microelectronic device fabrication, particle system characterization, electron microscopy and analysis, X-ray computed tomography, |
is listed by: ABRF CoreMarketplace has parent organization: University of Florida; Florida; USA |
Open | ABRF_2685 | https://coremarketplace.org/?FacilityID=2685&citation=1 | SCR_025135 | , University of Florida Herbert Wertheim College of Engineering Research Service Centers, Herbert Wertheim College of Engineering Research Service Centers | 2026-08-14 09:29:30 | 4 | |||||||
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University of Pittsburgh School of Medicine Gnotobiotic Animal Core Facility Resource Report Resource Website 1+ mentions |
University of Pittsburgh School of Medicine Gnotobiotic Animal Core Facility (RRID:SCR_025220) | service resource, access service resource, core facility | Gnotobiotic Animal Core Laboratory is a BSL2-compliant mouse facility providing isolators for studies requiring a controlled microbiotic environment. All husbandry and upkeep services are provided. Additional specialized support is also available. | ABRF, controlled microbiotic environment services, |
is listed by: ABRF CoreMarketplace has parent organization: University of Pittsburgh; Pennsylvania; USA |
ABRF_2708 | https://coremarketplace.org/?FacilityID=2708&citation=1 | SCR_025220 | Gnotobiotic Animal Core Laboratory | 2026-08-14 09:28:58 | 1 | ||||||||
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nltk Resource Report Resource Website 1+ mentions |
nltk (RRID:SCR_025101) | software toolkit, source code, software resource | Software suite of open source Python modules, data sets, and tutorials supporting research and development in Natural Language Processing. Platform for building Python programs to work with human language data. Provides interfaces to corpora and lexical resources such as WordNet, along with suite of text processing libraries for classification, tokenization, stemming, tagging, parsing, and semantic reasoning, wrappers for industrial strength NLP libraries, and active discussion forum. | Natural Language Processing, building Python programs platform, human language data, interfaces to corpora and lexical resources, text processing libraries, | Free, Available for download, Freely available | SCR_025101 | NLTK, Natural Language Toolkit | 2026-08-14 09:28:55 | 2 | ||||||||||
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University of Pittsburgh Health Sciences Mass Spectrometry Core Facility Resource Report Resource Website 10+ mentions |
University of Pittsburgh Health Sciences Mass Spectrometry Core Facility (RRID:SCR_025222) | service resource, access service resource, core facility | Health Sciences Mass Spectrometry Core provides liquid chromatography high resolution mass spectrometry (LC-HRMS) services for metabolomics, lipidomics and proteomics. Expert staff provide assistance throughout the full lifespan of all projects from experimental design and sample preparation through statistical analysis and interpretation of datasets. | ABRF, liquid chromatography high resolution mass spectrometry services, metabolomics, lipidomics, proteomics |
is listed by: ABRF CoreMarketplace has parent organization: University of Pittsburgh; Pennsylvania; USA |
ABRF_2710 | https://coremarketplace.org/?FacilityID=2710&citation=1 | SCR_025222 | Health Sciences Mass Spectrometry Core | 2026-08-14 09:29:11 | 11 | ||||||||
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University of Pittsburgh School of Medicine Flow Cytometry Core Facility Resource Report Resource Website 1+ mentions |
University of Pittsburgh School of Medicine Flow Cytometry Core Facility (RRID:SCR_025223) | service resource, access service resource, core facility | Flow Cytometry Core at John G. Rangos Sr. Research Center is a BSL2+ compliant cytometry analysis and sorting facility located at the John G. Rangos Sr. Research Center in Lawrenceville serving investigators from across the University of Pittsburgh. | ABRF, Flow Cytometry, |
is listed by: ABRF CoreMarketplace has parent organization: University of Pittsburgh; Pennsylvania; USA |
ABRF_2705 | https://coremarketplace.org/?FacilityID=2705&citation=1 | SCR_025223 | Flow Cytometry Core at John G. Rangos Sr. Research Center | 2026-08-14 09:28:58 | 1 | ||||||||
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JACUSA2 Resource Report Resource Website 1+ mentions |
JACUSA2 (RRID:SCR_025104) | data processing software, software application, data analysis software, software resource | Software tool to detect single nucleotide variants by comparing data from next-generation sequencing experiments. Variant caller to detect single nucleotide variant positions from comparing RNA-DNA and/or RNA-RNA sequencing samples. JACUSA2 is one-stop solution to detect single nucleotide variants and reverse transcriptase induced arrest events in Next-generation sequencing data. | accurate Variant assessment, detect single nucleotide variants, comparing data, next-generation sequencing experiments, RNA-DNA, RNA-RNA, sequencing samples comparison, | Max Planck Society | PMID:28049429 | Free, Available for download, Freely available | https://github.com/dieterich-lab/JACUSA | SCR_025104 | JACUSA | 2026-08-14 09:28:55 | 5 | |||||||
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Microsoft SEAL Resource Report Resource Website 10+ mentions |
Microsoft SEAL (RRID:SCR_025184) | SEAL | software toolkit, software resource, source code, software library | Software homomorphic encryption library. C++ FHE library implementing BFV and CKKS schemes. Allows computations to be performed directly on encrypted data. This enables software engineers to build end-to-end encrypted data storage and computation services where the customer never needs to share their key with the service. | C++ FHE library, homomorphic encryption, encrypted data, |
is used by: TenSEAL is used by: AWS HE toolkit is related to: EVA is related to: tf-encrypted works with: SEAL-python |
Free, Available for download, Freely available | SCR_025184 | 2026-08-14 09:29:31 | 10 | |||||||||
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University of Pittsburgh Cryo-electron Microscopy Core Facility Resource Report Resource Website 10+ mentions |
University of Pittsburgh Cryo-electron Microscopy Core Facility (RRID:SCR_025216) | service resource, access service resource, core facility | Facility provides access to cutting edge instrumentation for high resolution structural analysis of proteins, protein complexes, viruses, macromolecular assemblies, cellular organelles, and bacterial cells., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | ABRF, structural analysis, proteins, protein complexes, viruses, macromolecular assemblies, cellular organelles, bacterial cells, |
is listed by: ABRF CoreMarketplace has parent organization: University of Pittsburgh; Pennsylvania; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | ABRF_2701 | https://coremarketplace.org/?FacilityID=2701&citation=1 | SCR_025216 | , University of Pittsburgh Cryo-electron Microscopy Facility, Cryo-electron Microscopy Facility | 2026-08-14 09:29:11 | 15 | |||||||
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University of Pittsburgh Peptide and Peptoid Synthesis Core Facility Resource Report Resource Website 1+ mentions |
University of Pittsburgh Peptide and Peptoid Synthesis Core Facility (RRID:SCR_025219) | service resource, access service resource, core facility | Core offers services for custom synthesis and characterization of peptides, peptoids and small molecule constructs. The facility has extensive capabilities for technologically advanced custom modifications such as bioconjugations and targeted therapeutic strategies. State of the art HPLC and mass spectrometry capabilities as well as services in support of protein, siRNA, antibody and small molecule quantification and characterization are available | ABRF, custom synthesis and characterization, peptides, peptoids, small molecule, constructs |
is listed by: ABRF CoreMarketplace has parent organization: University of Pittsburgh; Pennsylvania; USA |
ABRF_2706 | https://coremarketplace.org/?FacilityID=2706&citation=1 | SCR_025219 | Peptide and Peptoid Synthesis Core | 2026-08-14 09:29:11 | 2 | ||||||||
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University of Pittsburgh Single Cell Core Facility Resource Report Resource Website 1+ mentions |
University of Pittsburgh Single Cell Core Facility (RRID:SCR_025110) | service resource, access service resource, core facility | Core offers single cell sequencing. Provides analysis of transcriptomics, proteomics and epigenomics at single cell level. Provides comprehensive approach for cell characterization and gene expression profiling. Services include single cell gene expression, immune profiling, ATAC, and multiome analysis. | ABRF, single cell sequencing, analysis, transcriptomics, proteomics, epigenomics |
is listed by: ABRF CoreMarketplace has parent organization: University of Pittsburgh; Pennsylvania; USA |
ABRF_2669 | https://coremarketplace.org/?FacilityID=2669&citation=1 | SCR_025110 | University of Pittsburgh Single Cell Core | 2026-08-14 09:29:29 | 6 | ||||||||
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TenSEAL Resource Report Resource Website 1+ mentions |
TenSEAL (RRID:SCR_025198) | software toolkit, software resource, source code, software library | Software library for doing homomorphic encryption operations on tensors built on Microsoft SEAL, with Python API. | homomorphic encryption operations, operations on tensors, HE operations on tensors, built on Microsoft SEAL, Python API, | uses: Microsoft SEAL | Free, Available for download, Freely available | SCR_025198 | 2026-08-14 09:29:11 | 3 | ||||||||||
|
GALA Resource Report Resource Website 1+ mentions |
GALA (RRID:SCR_025194) | GALA | data processing software, software application, data analysis software, software resource | Software tool for protein function prediction. Extracts information from both protein sequences and structures, facilitating unified learning of protein structural representations. GALA incorporates domain discriminator conditioned on both representations and predicted probabilities, which undergoes adversarial training to ensure representation invariance across diverse environments. | protein function prediction, protein sequences and structures, | DOI:10.1093/gigascience/giae093 | SCR_025194 | Graph Adversarial Learning with Alignment | 2026-08-14 09:29:31 | 1 | |||||||||
|
Natural Products Atlas Resource Report Resource Website 10+ mentions |
Natural Products Atlas (RRID:SCR_025107) | NP Atlas | data or information resource, knowledge base, atlas | Open access knowledge base for microbial natural products discovery. Database of microbially derived natural product structures. Provides coverage of bacterial and fungal natural products to visualize chemical diversity. Includes compounds and contains referenced data for structure, compound names, source organisms, isolation references, total syntheses, and instances of structural reassignment. Interactive web portal permits searching by structure, substructure, and physical properties. Provides mechanisms for visualizing natural products chemical space and dashboards for displaying author and discovery timeline data. Atlas has been developed under FAIR principles. | FAIR principles, microbial natural products discovery, natural product structures, bacterial and fungal natural products, visualize chemical diversity, | has parent organization: Simon Fraser University; British Columbia; Canada | NSERC Discovery ; NCCIH U41 AT008718; NIGMS R01 GM125943; NCCIH F31 AT010098; NCI F31 CA236237; NCCIH T32 AT007533; NIH D43 TW010530; NSF ; BBSRC ; Carnegie Trust for the Universities of Scotland ; Netherlands eScience Center ; Sao Paulo Research Foundation ; NCCIH AT008718; NIGMS GM124461; Natural Sciences and Engineering Research Council of Canada ; Ministry of Science ; Technology and Telecommunications of Costa Rica |
PMID:31807684 DOI:10.1093/nar/gkab941 |
Free, Freely available, | SCR_025107 | , The Natural Products Atlas, The Natural Products Atlas 2.0 | 2026-08-14 09:29:29 | 36 | ||||||
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Centers for Disease Control and Prevention NHIS Data, Questionnaires and Related Documentation Resource Report Resource Website 10+ mentions |
Centers for Disease Control and Prevention NHIS Data, Questionnaires and Related Documentation (RRID:SCR_025162) | data or information resource, portal, organization portal | Collection of National Health Interview Survey (NHIS) data, questionnaires and related documents to monitor health of the United States population through collection and analysis of data on broad range of health topics. | National Health Interview Survey, NHIS data and related documents, monitor health of the United States population, | has parent organization: Centers for Disease Control and Prevention | Free, Freely available | SCR_025162 | , Questionnaires and Related Documentation, CDC NHIS Data, NHIS Data | 2026-08-14 09:28:56 | 36 | |||||||||
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Creighton University Histology Core Facility Resource Report Resource Website 1+ mentions |
Creighton University Histology Core Facility (RRID:SCR_025163) | service resource, access service resource, core facility | Facility provides equipment and services for studies utilizing animal and human tissues. Services include Sample, Processing, Embedding, Sectioning, Histochemistry, Immunohistochemistry, Imaging, Microscopy. Equipment includes microtomes for paraffin sections, cryostat for frozen sections, vibratome for plastic sections, and Nikon Eclipse Ci-L microscope for brightfield and fluorescence applications. | ABRF, animal and human tissues processing, embedding, sectioning, histochemistry, immunohistochemistry, imaging, |
is listed by: ABRF CoreMarketplace has parent organization: Creighton University; Nebraska; USA |
ABRF_2696 | https://coremarketplace.org/?FacilityID=2696&citation=1 | SCR_025163 | CU Histology Core Lab, Creighton University Histology Core Lab | 2026-08-14 09:29:30 | 2 | ||||||||
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University of Pittsburgh Magnetic Resonance Research Center Core Facility Resource Report Resource Website 10+ mentions |
University of Pittsburgh Magnetic Resonance Research Center Core Facility (RRID:SCR_025215) | service resource, access service resource, core facility | Core is dedicated to development and application of magnetic resonance imaging and magnetic resonance spectroscopy for medical and biological research. MRRC is whole-body imaging capable with specialty in anatomical MRI imaging of brain, spine, extremities, liver, bladder as well as functional MRI to study cognitive, sensory, and motor function in the brain. | ABRF, magnetic resonance imaging, magnetic resonance spectroscopy, |
is listed by: ABRF CoreMarketplace has parent organization: University of Pittsburgh; Pennsylvania; USA |
ABRF_2702 | https://coremarketplace.org/?FacilityID=2702&citation=1 | SCR_025215 | , University of Pittsburgh Magnetic Resonance Research Center, Magnetic Resonance Research Center | 2026-08-14 09:29:32 | 12 | ||||||||
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FINAL Resource Report Resource Website 1+ mentions |
FINAL (RRID:SCR_025171) | software toolkit, software resource, source code, software library | Software C++ FHE library as fully homomorphic encryption scheme based on NTRU and LWE. | fully homomorphic encryption, FHE, homomorphic, homomorphic encryption scheme, NTRU, LWE, | Free, Available for download, Freely available | SCR_025171 | Faster FHE instantiated with NTRU and LWE | 2026-08-14 09:29:10 | 1 | ||||||||||
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Lunenfeld-Tanenbaum Research Institute Network Biology Collaborative Centre Flow Cytometry Core Facility Resource Report Resource Website 1+ mentions |
Lunenfeld-Tanenbaum Research Institute Network Biology Collaborative Centre Flow Cytometry Core Facility (RRID:SCR_025384) | service resource, access service resource, core facility | Core provides flow cytometry analyzers and cell sorters, with specialty in image-based flow cytometry and cell sorting.Services include unassisted and full-service cell sorting, training on theory and on instruments, consultation on experiment design, protocol development, data analysis, manuscript preparation and grant submission. Applications include image-based analysis powered by machine learning on the Amnis ImageStream; image-based cell sorting using the BD BACS Discover S8; cell sorting for a variety of applications including multi-color sort for bulk culture, indexed cell sort into 96-well plates, cell cycle phase sort and primary tissue sorting for RNA or DNA analysis. | ABRF, cell sorting, flow cytometry, |
is listed by: ABRF CoreMarketplace has parent organization: Lunenfeld-Tanenbaum Research Institute |
ABRF_2807 | https://coremarketplace.org/?FacilityID=2807&citation=1 | SCR_025384 | , Lunenfeld-Tanenbaum Research Institute Network Biology Collaborative Centre Flow Cytometry, Network Biology Collaborative Centre Flow Cytometry | 2026-08-14 09:29:36 | 1 |
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