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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Aquaria Resource Report Resource Website |
Aquaria (RRID:SCR_021834) | production service resource, web service, data access protocol, software resource, service resource, analysis service resource | Web application to help biologists use 3D structures to gain insight into protein function. Used in revealing novel insights into molecular mechanisms underlying protein function in health and disease. System for incorporating 3D structures into variant analysis. | molecular mechanisms underlying protein function, incorporating 3D structures into variant analysis | is related to: Aquaria COVID Resource | DOI:10.1101/2021.09.10.459756 | Free, Freely available | https://aquaria.app | SCR_021834 | Aquaria.App | 2026-08-14 09:28:26 | 0 | |||||||
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Microns Explorer Resource Report Resource Website 10+ mentions |
Microns Explorer (RRID:SCR_021678) | data or information resource, portal, topical portal | Portal to release connectivity and functional imaging data collected by consortium of laboratories led by groups at Allen Institute for Brain Science, Princeton University, and Baylor College of Medicine, with support from broad array of teams, coordinated and funded by IARPA MICrONS program. Data include large scale electron microscopy based reconstructions of cortical circuitry from mouse visual cortex, with corresponding functional imaging data from those same neurons. | Connectome, mouse, cortex, electron microscopy, functional imaging data, cortical circuitry reconstruction, neuron |
is related to: Allen Institute for Brain Science is related to: Princeton University; New Jersey; USA is related to: Baylor College of Medicine; Houston; Texas |
IARPA MICrONS | Free, Freely available | SCR_021678 | MICrONS Explorer | 2026-08-14 09:28:23 | 19 | ||||||||
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Connect TBI Resource Report Resource Website |
Connect TBI (RRID:SCR_022009) | data or information resource, portal, topical portal | Portal for traumatic brain injury data. Common Data Elements (CDEs) and Unique Data Elements (UDEs) for digital neuropathological data and clinical data that will be collected in all CONNECT-TBI center projects. Goal is to establish multi-center, digital neuropathological data and clinical data reporting network with case accrual from each center project. Collected neuropathological data and clinical data available by sharing with center site investigators approved by Administrative Core and by submitting into FITBIR. Central TBI data repository by collecting digital neuropathological data and clinical data from TBI cases and normal controls at each center and posting library of their holdings. | brain injury, traumatic brain injury, digital neuropathological data, clinical data | Free, Freely available | SCR_022009 | Connect-TBI, THE COLLABORATIVE NEUROPATHOLOGY NETWORK CHARACTERIZING OUTCOMES OF TBI | 2026-08-14 09:28:35 | 0 | ||||||||||
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StimGen Resource Report Resource Website 1+ mentions |
StimGen (RRID:SCR_021676) | data processing software, data visualization software, software application, software resource | Software tool as interface for designing and presenting visual stimuli. | Retina, Visual Stimulation, Design, Presentation | SCR_021676 | 2026-08-14 09:28:30 | 3 | ||||||||||||
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Neuronanalyser Resource Report Resource Website 1+ mentions |
Neuronanalyser (RRID:SCR_022007) | data processing software, 2d time-series analysis software, software application, data analysis software, software resource, time-series analysis software | Software analysis toolkit for tracking blobs and extracting intensity values from imaging data, designed for use with ratiometric fluorescent sensors. | tracking blobs, extracting intensity values, imaging data, ratiometric fluorescent sensors | ERC - European Research Council 269058 | Free, Available for download, Freely available | SCR_022007 | 2026-08-14 09:28:27 | 3 | ||||||||||
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ZEN-ZEISS Efficient Navigation Resource Report Resource Website 100+ mentions |
ZEN-ZEISS Efficient Navigation (RRID:SCR_021725) | ZEN | image processing software, data processing software, software application, software resource, data visualization software, data acquisition software | Software package for ZEISS light microscopy systems. Universal user interface for every imaging system from ZEISS to assist to acquire images, process images, visualize big data by GPU powered 3D engine, analyze images via Machine Learning-based tools, correlate between light-light or light-electron microscopes, store raw data in secure format locally or in the cloud., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | ZEISS light microscopy, ZEISS, imaging | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_021725 | ZEN2010 B SP1 software, ZEISS Efficient Navigation, ZEN - ZEISS Efficient Navigation | 2026-08-14 09:28:38 | 145 | |||||||||
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Teensy-Based Interface Resource Report Resource Website |
Teensy-Based Interface (RRID:SCR_021602) | data processing software, software application, software resource, data acquisition software | Teensy microcontroller based interface for optical imaging camera control during behavioral experiments. | Camera control, Teensy 3.2, Teensy microcontroller based interface, sCMOS camera control, OpenBehavior |
is listed by: OpenBehavior is related to: Teensy-Based Interface project |
DOI:10.1016/j.jneumeth.2019.03.019 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/teensy-based-interface/ | SCR_021602 | 2026-08-14 09:28:29 | 0 | ||||||||
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MutaRNA Resource Report Resource Website 1+ mentions |
MutaRNA (RRID:SCR_021723) | production service resource, web service, data access protocol, software resource, service resource, analysis service resource | Web server predicts and visualizes mutation induced structure changes of single nucleotide polymorphism in RNA sequence. This covers changes in accessibility (single strandedness) of molecule, its intra molecular base pairing potential and its base pairing probabilities. One of Freiburg RNA tools. | Mutation induced structure changes, single nucleotide polymorphism, RNA sequence | has parent organization: University of Freiburg; Baden-Wurttemberg; Germany | German Research Foundation ; Germany Excellence Strategy ; Baden-Wuerttemberg Ministry of Science ; Research and Art ; University of Freiburg |
PMID:32392303 | Free, Freely available | SCR_021723 | Mutational Analysis of RNAs | 2026-08-14 09:28:30 | 2 | |||||||
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DiPer Resource Report Resource Website 1+ mentions |
DiPer (RRID:SCR_021720) | data processing software, software application, data analysis software, software resource | Software tool calculates direction autocorrelation, plots and calculates other essential parameters to analyze cell migration in two dimensions: it displays cell trajectories individually and collectively, and it calculates average speed and mean square displacements (MSDs) to assess the area explored by cells over time. | calculates direction autocorrelation, analyze cell migration, displays cell trajectories, calculates average speed and mean square displacements | SCR_021720 | 2026-08-14 09:28:30 | 3 | ||||||||||||
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NIH NCI list of FDA approved cancer drugs Resource Report Resource Website 10+ mentions |
NIH NCI list of FDA approved cancer drugs (RRID:SCR_021841) | data or information resource, portal, disease-related portal, topical portal | Portal to find consumer friendly information about drugs for cancer and conditions related to cancer. The list is in alphabetical order by generic name and brand name. | drugs for cancer, conditions related to cancer, alphabetical order, generic name, brand name | cancer | Free, Available for download, Freely available | SCR_021841 | 2026-08-14 09:28:33 | 16 | ||||||||||
|
BayeScan Resource Report Resource Website 50+ mentions |
BayeScan (RRID:SCR_022018) | data processing software, software application, data analysis software, software resource | Software tool to identify candidate loci under natural selection from genetic data, using differences in allele frequencies between populations. | identify candidate loci under natural selection, genetic data, differences in allele frequencies between populations |
has parent organization: University of Bern; Bern; Switzerland has parent organization: SIB Swiss Institute of Bioinformatics |
University of Bern Research Foundation ; Swiss National Science Foundation |
DOI:10.1534/genetics.108.092221 DOI:10.1111/j.1365-294X.2010.04820.x DOI:10.1111/j.1365-294X.2011.05015.x |
Free, Available for Download, Freely available | SCR_022018 | 2026-08-14 09:28:27 | 89 | ||||||||
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VAMPIRE Resource Report Resource Website 1+ mentions |
VAMPIRE (RRID:SCR_021721) | image analysis software, data processing software, software application, data analysis software, software resource | Software tool for analysis of cell and nuclear morphology from fluorescence or bright field images. Enables profiling and classification of cells into shape modes based on equidistant points along cell and nuclear contours. Robust method to quantify cell morphological heterogeneity. | cell morphology analysis, nuclear morphology analysis, fluorescence images, bright field images | NCI U54 CA143868; NCI R01 CA174388; NIA P30 AG021334; NIA U01 AG060903 |
DOI:10.1038/s41596-020-00432-x | Free, Available for download, Freely available | SCR_021721 | Visually Aided Morpho-Phenotyping Image Recognition | 2026-08-14 09:28:23 | 2 | ||||||||
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CIRIquant Resource Report Resource Website 1+ mentions |
CIRIquant (RRID:SCR_021661) | software toolkit, data processing software, software application, data analysis software, software resource | Software Python package for accurate circRNA quantification and differential expression analysis. Comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. | circRNA quantification, differential expression analysis, RNA-Seq data, circular RNA, circular isoform switching events | National Natural Science Foundation of China | DOI:10.1038/s41467-019-13840-9 | Free, Available for download, Freely available | https://sourceforge.net/projects/ciri/files/, https://ciri-cookbook.readthedocs.io/en/latest/CIRIquant_0_home.html# | SCR_021661 | 2026-08-14 09:28:22 | 4 | ||||||||
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Genie 2000 Basic Resource Report Resource Website 1+ mentions |
Genie 2000 Basic (RRID:SCR_021933) | data processing software, software application, data analysis software, software resource, data acquisition software | Software tool as comprehensive environment for data acquisition, display and analysis of gamma and alpha spectrometry data. | Data acquisition, display, analysis, gamma and alpha spectrometry data | Restricted | SCR_021933 | Genie 2000 Basic Spectroscopy Software, Marion Technologies Genie 2000 Basic Spectroscopy Software, Marion Technologies Genie 2000 Basic | 2026-08-14 09:28:40 | 3 | ||||||||||
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SARS-CoV-2 network analysis Resource Report Resource Website 1+ mentions |
SARS-CoV-2 network analysis (RRID:SCR_021811) | data processing software, software application, data analysis software, network analysis software, software resource, time-series analysis software, 1d time-series analysis software | Software tool to predict human proteins that interact with SARS-CoV-2 proteins and trace provenance of predictions. | network propagation; interpretable machine learning; provenance tracing; SARS-CoV-2; COVID-19; virus-host protein interaction networks | Free, Available for download, Freely available | SCR_021811 | SARS-CoV-2-network-analysis, SARS-CoV-2 Protein Interaction Network Analysis | 2026-08-14 09:28:25 | 1 | ||||||||||
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MRI-stereoscope project Resource Report Resource Website 1+ mentions |
MRI-stereoscope project (RRID:SCR_021655) | project portal, data or information resource, portal, instrument resource | Project provides miniature mirror stereoscope system for MRI-scanner. System takes advantage of commonly used display equipment, MRI head coil, and display screen. Miniature Wheatstone stereoscope is used for human neuroimaging. | Miniature Wheatstone stereoscope, human neuroimaging, stereoscope system, MRI-scanner, Istrument, OpenBehavior | is listed by: OpenBehavior | Free, Freely available | SCR_021655 | 2026-08-14 09:28:29 | 1 | ||||||||||
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IBM SPSS Statistics Resource Report Resource Website 1000+ mentions |
IBM SPSS Statistics (RRID:SCR_016479) | data processing software, software application, data analysis software, software resource, data visualization software | Software package for statistics. Used to analyze and visualize data. Extensions can be used, Python and R programming language code, to integrate with open source software. Available for Windows and Mac operating systems.Versions that were produced by SPSS Inc. before the IBM acquisition (Versions 18 and earlier) would be given origin or publisher of SPSS Inc. in Chicago. Versions that were released after the acquisition would be given origin or publisher of IBM Corp. in Armonk, NY. | Statistics, data analysis, data visualization, statistical analysis, IBM, IBM SPSS, advanced analytics |
is related to: SPSS is related to: IBM SPSS Amos |
Restricted | SCR_019096, SCR_021965 | https://www.ibm.com/support/pages/downloading-ibm-spss-statistics-24, https://www.ibm.com/support/pages/how-cite-ibm-spss-statistics-or-earlier-versions-spss#:~:text=IBM%20SPSS%20Statistics%20for%20Windows%2C%20Version%2025.0, Armonk%2C%20NY%3A%20IBM%20Corp.&text=For%20platforms%20other%20than%20Windows, Statistics%20for%20Macintosh%2C%20Version%2027.0. | SCR_016479 | SPSS Statistics v26, SPSS Statistics v27, SPSS Statistics v24, SPSS Statistics v25 | 2026-08-14 09:27:35 | 1172 | |||||||
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TractionsForAll Resource Report Resource Website 1+ mentions |
TractionsForAll (RRID:SCR_021819) | data processing software, software application, data analysis software, software resource | Software tool to calculate 2D tractions exerted by adherent cell on its substrate. Used in field of mechanobiology to study contractile responses of variety of cell types. | Traction force analysis, 2D tractions, adherent cell, mechanobiology, cell contractile responses | uses: MATLAB | Free, Freely available | SCR_021819 | 2026-08-14 09:28:39 | 2 | ||||||||||
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NHP pycortex Resource Report Resource Website 1+ mentions |
NHP pycortex (RRID:SCR_021815) | data processing software, data visualization software, software application, software resource | Software tool as adaptation for NHP brains and pipelines. Pycortex python based toolkit for surface visualization of fMRI data. | fMRI data, surface visualization | has parent organization: Royal Netherlands Academy of Arts and Sciences; Amsterdam; Netherlands | Free, Available for download, Freely available | SCR_021815 | NHP-pycortex | 2026-08-14 09:28:25 | 1 | |||||||||
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eQTL Catalogue Resource Report Resource Website 50+ mentions |
eQTL Catalogue (RRID:SCR_021700) | data or information resource, catalog, database | Catalog provides uniformly processed gene expression and splicing QTLs from all available public studies on human. Expression and splicing QTLs recomputed from public datasets. | Gene expression, splicing QTLs, public datasets, human data, public studies | is related to: Open Targets Genetics Portal | DOI:10.1101/2020.01.29.924266 | Free, Freely available | SCR_021700 | 2026-08-14 09:28:38 | 59 |
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