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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Lunenfeld-Tanenbaum Research Institute Network Biology Collaborative Centre Next-Generation Sequencing Core Facility Resource Report Resource Website 1+ mentions |
Lunenfeld-Tanenbaum Research Institute Network Biology Collaborative Centre Next-Generation Sequencing Core Facility (RRID:SCR_025385) | service resource, access service resource, core facility | Core provides both short and long read sequencing capabilities for analysis of gene function and expression.Facility specializes in functional genomics and single cell biology. Services include consultation, sample preparation (especially for spatial and single cell applications), quality control, sequencing analysis, bioinformatics support, and assistance with grant and publication writing related to the services. Applications include:gene function analysis - pooled CRISPR screening, multiplexed barcode screens; whole genome sequencing - both short- and long-read sequencing; bulk gene expression profiling; single cell biology (single cells and single nuclei); spatial profiling; pathogen detection and profiling. | ABRF, short and long read sequencing, analysis of gene function and expression, |
is listed by: ABRF CoreMarketplace has parent organization: Lunenfeld-Tanenbaum Research Institute |
ABRF_2808 | https://coremarketplace.org/?FacilityID=2808&citation=1 | SCR_025385 | , Lunenfeld-Tanenbaum Research Institute Network Biology Collaborative Centre Next-Generation Sequencing, Network Biology Collaborative Centre Next-Generation Sequencing | 2026-08-14 09:29:13 | 3 | ||||||||
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University of Luxembourg LCSB Rodent Platform Core Facility Resource Report Resource Website 1+ mentions |
University of Luxembourg LCSB Rodent Platform Core Facility (RRID:SCR_025267) | service resource, access service resource, core facility | Assist researchers in development and analysis of various in vivo neurodegenerative and cancer models including humanized and germ-free animals. Facility has capacity to house different transgenic and germ-free mouse strains in more than 2500 IVC cages within SOPF breeding barrier. | ABRF, in vivo neurodegenerative and cancer models, development and analysis, humanized and germ-free animals, transgenic and germ-free mouse strains, |
is listed by: ABRF CoreMarketplace has parent organization: University of Luxembourg; Luxembourg; Luxembourg |
Open | ABRF_2725 | https://coremarketplace.org/?FacilityID=2725&citation=1 | SCR_025267 | LCSB Rodent Platform Core Facility, LCSB Rodent Platform | 2026-08-14 09:29:12 | 1 | |||||||
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ggvenn Resource Report Resource Website 10+ mentions |
ggvenn (RRID:SCR_025300) | software toolkit, source code, software resource | Software R package to draw venn diagram by ggplot2. | draw venn diagram, | uses: ggplot2 | Free, Available for download, Freely available | SCR_025300 | 2026-08-14 09:29:12 | 41 | ||||||||||
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Wound Healing Tool Resource Report Resource Website 10+ mentions |
Wound Healing Tool (RRID:SCR_025260) | image analysis software, data processing software, 2d time-series analysis software, software application, data analysis software, time-series analysis software, software resource | Software tool to analyze scratch assays. It measures the area of wound in cellular tissue on stack of images representing time-series. | Sratch assay analysis, wound area measurement, tissue image, images representing time-series, | works with: ImageJ | Free, Freely available, | SCR_025260 | MRI Wound Healing Tool | 2026-08-14 09:29:33 | 15 | |||||||||
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Maggot Resource Report Resource Website 1+ mentions |
Maggot (RRID:SCR_025261) | software application, web application, software resource, data management software | Web ecosystem for sharing metadata. Designed to annotate datasets by creating metadata file to attach to storage space. Allows users to add descriptive metadata to datasets produced within collective of research unit, platform, multi-partner project, etc. to fit to data management plan about data organization and documentation, data storage and frictionless metadata sharing. | FAIR, Data management, Metadata, Interoperability, Metadata crosswalk, Vocabulary, Ontologies, Thesaurus | Free, Available for download, Freely available | biotools:maggot | https://bio.tools/maggot | SCR_025261 | Metadata AGGregation On data sTorage | 2026-08-14 09:29:12 | 1 | ||||||||
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LAMBADA Resource Report Resource Website 1+ mentions |
LAMBADA (RRID:SCR_025382) | data or information resource, reference atlas, atlas | Reference atlas of the developing post-natal mouse brain. Provides data and annotations on distribution of cells and gene expression in mouse brain. | developing post-natal mouse brain, mouse brain, developing brain, distribution of cells, gene expression, | Free, Freely available | SCR_025382 | Lightsheet Aligned Mouse Brain Annotated Developmental Atlas | 2026-08-14 09:29:13 | 1 | ||||||||||
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Dartmouth Genomic Data Sciences Core Facility Resource Report Resource Website 1+ mentions |
Dartmouth Genomic Data Sciences Core Facility (RRID:SCR_025383) | GDSC | service resource, access service resource, core facility | Core offers statistical analysis of genomics data. Provides suite of standardized analysis pipelines for common data types like RNA-seq, ATAC-seq, and genome assembly. For more complex datasets, such as single-cell genomics, provides tailored analysis solutions. Core team assists with all project stages, from experimental design to publication support and data management. GDSC hosts several multi-day bioinformatics workshops designed to introduce fundamental concepts for analysis of genomics data. | ABRF, statistical analysis, genomics data, RNA-seq data, ATAC-seq data, genome assembly data, data analysis, experimental design, publication support, data management, |
is listed by: ABRF CoreMarketplace has parent organization: Dartmouth Medical School; New Hampshire; USA has parent organization: Dartmouth College; New Hampshire; USA |
ABRF_2806 | https://coremarketplace.org/?FacilityID=2806&citation=1 | SCR_025383 | , Dartmouth Genomic Data Sciences Core, Genomic Data Sciences Core, Geisel School of Medicine at Dartmouth Genomic Data Sciences Core | 2026-08-14 09:29:00 | 3 | |||||||
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NHash Identifier Resource Report Resource Website 1+ mentions |
NHash Identifier (RRID:SCR_025313) | algorithm resource, software resource | Algorithm for generating unique study identifiers in distributed and validatable fashion, in multicenter research. Light-weight, block chain style resource identifier generation for tracking resource linkage, provenance, utilization, and visualization. NHash has unique set of properties: (1) it is a pseudonym serving the purpose of linking research data about study participant for research purposes; (2) it can be generated automatically in completely distributed fashion with virtually no risk for identifier collision; (3) it incorporates set of cryptographic hash functions based on N-grams, with combination of additional encryption techniques such as shift cipher; (d) it is validatable (error tolerant) in the sense that inadvertent edit errors will mostly result in invalid identifiers. | Identifier, data provenance, resource tracking, management, visualization, BRAIN Initiative Cell Atlas Network, | is organization facet of: BRAIN Initiative Cell Atlas Network | NINDS U01NS090408; NINDS U01NS090405; NCATS UL1TR000117 |
PMID:26554419 | Free, Freely available | SCR_025313 | Randomized N-gram Hashing Identifier | 2026-08-14 09:29:34 | 2 | |||||||
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Lunenfeld-Tanenbaum Research Institute Network Biology Collaborative Centre High-Throughput Screening Core Facility Resource Report Resource Website 1+ mentions |
Lunenfeld-Tanenbaum Research Institute Network Biology Collaborative Centre High-Throughput Screening Core Facility (RRID:SCR_025390) | service resource, access service resource, core facility | Provides instrumentation and expertise for the automation of laboratory processes. Facility has automated screening platforms and accessory equipment to enable flexible and scalable in vitro and in vivo assays including organoids. Services include access to chemical and genome-wide siRNA libraries, assay development and implementation, and data analysis. Applications include drug discovery and lead validation; ELISA-based assays for immune surveillance; protein biomarker discovery using OLINK proteomics technology; multiplexed barcode screening assays. | ABRF, siRNA libraries, screening platforms and accessory equipment, ELISA, in vitro and in vivo assays, organoids, multiplexed barcode screening assays, |
is listed by: ABRF CoreMarketplace has parent organization: Lunenfeld-Tanenbaum Research Institute |
ABRF_2809 | https://coremarketplace.org/?FacilityID=2809&citation=1 | SCR_025390 | , Network Biology Collaborative Centre High-Throughput Screening, Lunenfeld-Tanenbaum Research Institute Network Biology Collaborative Centre High-Throughput Screening | 2026-08-14 09:29:13 | 7 | ||||||||
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University of Illinois at Urbana-Champaign Roy J. Carver Biotechnology Center Cytometry and Microscopy to Omics Core Facility Resource Report Resource Website 1+ mentions |
University of Illinois at Urbana-Champaign Roy J. Carver Biotechnology Center Cytometry and Microscopy to Omics Core Facility (RRID:SCR_025272) | CMtO | service resource, access service resource, core facility | Facility, couples cytometry with microscopy, genomics and proteomics using instrumentation, expertise and services. Utilizes advanced super resolution microscopy techniques to gain understanding of cell sorting, analysis and enable cutting-edge spatial and single cell and multi-omics services. | ABRF, cytometry, microscopy, genomics, proteomics, super resolution microscopy, |
is listed by: ABRF CoreMarketplace has parent organization: University of Illinois at Urbana-Champaign; Illinois; USA |
Open | ABRF_2727 | https://coremarketplace.org/?FacilityID=2727&citation=1 | SCR_025272 | , UIUC, Roy J. Carver Biotechnology Center, Cytometry and Microscopy to Omics Facility | 2026-08-14 09:28:59 | 1 | ||||||
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goatools Resource Report Resource Website 100+ mentions |
goatools (RRID:SCR_025305) | software toolkit, software resource, source code, software library | Software Python library for Gene Ontology analysis. Performs gene ontology enrichment analyses to determine over- and under-represented terms. | PMID:30022098 | Free, Available for download, Freely available | https://github.com/tanghaibao/goatools | SCR_025305 | GOATOOLS | 2026-08-14 09:29:34 | 392 | |||||||||
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OriDB Resource Report Resource Website 1+ mentions |
OriDB (RRID:SCR_025365) | database, data or information resource | Provides catalogue of confirmed and predicted DNA replication origin sites. At present this is limited to budding yeast and fission yeast. Data have been collated as culmination of number of genome-wide studies to identify location of replication origins throughout budding yeast genome. In addition to genome-wide studies data from large number of other origin mapping and characterization studies have been included. | DNA replication origin sites collection, yeast data, budding yeast genome, genome-wide studies data, | Royal Society ; University of Nottingham ; Biotechnology and Biological Sciences Research Council |
PMID:22121216 | Free, Freely available | SCR_025365 | DNA Replication Origin Database | 2026-08-14 09:29:13 | 7 | ||||||||
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Incucyte Cell-By-Cell Analysis Software Module Resource Report Resource Website 1+ mentions |
Incucyte Cell-By-Cell Analysis Software Module (RRID:SCR_025367) | software application, software resource | Software for analysis to determine live versus dead cells – no fluorescent dyes needed. | determine live versus dead cells, no fluorescent dyes needed, analysis | Restricted | SCR_025367 | 2026-08-14 09:29:00 | 3 | |||||||||||
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University of Pittsburgh Hillman Cancer Center In Vivo Imaging Core Facility Resource Report Resource Website 1+ mentions |
University of Pittsburgh Hillman Cancer Center In Vivo Imaging Core Facility (RRID:SCR_025360) | IVIF | service resource, access service resource, core facility | Provides novel quantitative imaging techniques that trace biomarkers of molecular events associated with effective cancer therapy. | ABRF, quantitative imaging techniques, trace biomarkers, molecular events, cancer therapy, |
is listed by: ABRF CoreMarketplace has parent organization: University of Pittsburgh; Pennsylvania; USA |
ABRF_2784 | https://coremarketplace.org/?FacilityID=2784&citation=1 | SCR_025360 | , UPMC Hillman Cancer Center In Vivo Imaging Facility (pre clinical and clinical) (IVIF), In Vivo Imaging Facility (pre clinical and clinical) (IVIF) | 2026-08-14 09:29:00 | 2 | |||||||
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STARNET Resource Report Resource Website 1+ mentions |
STARNET (RRID:SCR_025238) | STARNET | source code, data access protocol, software resource, web service | Web interactive browser to visualize data and perform gene set enrichment analysis along with gene and SNP lookup. Web interface used to query STARNET datasets and downstream analysis which includes RNAseq from 7 tissues: blood, free internal mammary artery (MAM), atherosclerotic aortic root (AOR), subcutaneous fat (SF), visceral abdominal fat (VAF), skeletal muscle (SKLM), and liver (LIV). Paired SNP genotyping data is included and utilized for tissue expression quantitative trait loci (eQTL), CAD heritability (H2), co-expression networks and gene regulatory networks. | cross-tissue co-expression analysis, STARNET multitissue gene expression data, cardiovascular disease patients, | NHLBI R01HL125863; American Heart Association ; Swedish Research Council ; Heart Lung Foundation ; AstraZeneca ; European Union ; Federal German Ministries ; ModulMax ; NHLBI R01HL130423; NHLBI R01HL135093; NHLBI R01HL148167; New South Wales health ; NHLBI R01 HL144651; NHLBI R01 HL147883; NHLBI PO1 HL28481; NIDDK R01 DK117850; NHLBI HL138193 |
PMID:36276926 | Free, Freely available | https://github.com/skoplev/starnet | SCR_025238 | Stockholm-Tartu Atherosclerosis Reverse Networks Engineering Task | 2026-08-14 09:28:58 | 6 | ||||||
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Harvard University Chan School of Public Health Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
Harvard University Chan School of Public Health Bioinformatics Core Facility (RRID:SCR_025373) | HSPH | service resource, access service resource, core facility | Provides single point of contact for Harvard researchers interested in bioinformatics support, applying genomic approaches together with established and developing methodologies from epidemiology, environmental health, biostatistics and bioinformatics to improve human health.Services include analysis all types of next-generation sequencing data from RNA-seq and single cell RNA-seq to variant sequencing (exome or whole genome), to ChIP-seq or bisulfite sequencing. Offers bioinformatics training program for Harvard researchers interested in learning basic data skills and analysis of high-throughput sequencing data. | ABRF, bioinformatics support, next-generation sequencing data, ChIP-seq data, bisulfite sequencing, data analysis, |
is listed by: ABRF CoreMarketplace has parent organization: Harvard University; Cambridge; United States |
Restricted | ABRF_2789 | https://coremarketplace.org/?FacilityID=2789&citation=1 | SCR_025373 | HSPH Harvard Chan Bioinformatics Core, Harvard University HSPH Harvard Chan Bioinformatics Core | 2026-08-14 09:29:13 | 4 | ||||||
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University of British Columbia MRI Research Core Facility Resource Report Resource Website 1+ mentions |
University of British Columbia MRI Research Core Facility (RRID:SCR_025374) | service resource, access service resource, core facility | Facility consist of Philips 3.0 Tesla MRI scanner for studies on humans, Bruker small bore 9.4 Tesla MRI scanner, and computing facility for image archival and analysis. Scanners are entirely dedicated to research, and MR scanning is carried out on cost recovery basis. The scanners were selected to cater to a very broad range of in vivo applications and the Imaging Centre staff is trained to support any research projects that the scanners can accommodate. | ABRF, MRI, |
is listed by: ABRF CoreMarketplace has parent organization: University of British Columbia; British Columbia; Canada |
ABRF_2797 | https://coremarketplace.org/?FacilityID=2797&citation=1 | SCR_025374 | , UBC MRI Research, University of British Columbia UBC MRI Research | 2026-08-14 09:29:00 | 6 | ||||||||
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Washington University School of Medicine Knight ADRC Request Center Resources Core Facility Resource Report Resource Website 1+ mentions |
Washington University School of Medicine Knight ADRC Request Center Resources Core Facility (RRID:SCR_025254) | service resource, access service resource, core facility | Provides on request resources including Data: clinical and cognitive measures as well as MRI and amyloid imaging scans; Tissue: frozen brain tissue, paraffin brain sections, antemortem CSF, DNA, fibroblast, dermal fibroblasts, plasma (fasting and non-fasting) and iPSC; Participants: eligible participants may be invited to enroll in research of other investigators after appropriate review. Researchers can use the request portal to review Center guidelines and policies; view available data and tissue; access data tables and codebooks; and submit request for resources. | ABRF, Alzheimer research, Data, OASIS, Biospecimen, tissue, imaging, |
is listed by: ABRF CoreMarketplace has parent organization: Washington University School of Medicine Knight Alzheimers Disease Research Center has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA |
Alzheimer disease, dementia | NIA P30AG066444; NIA P01AG026276; NIA U19 AG0032438; NIA P01AG003991 |
ABRF_2734 | https://coremarketplace.org/?FacilityID=2734&citation=1 | SCR_025254 | ADRC Request Center Resources | 2026-08-14 09:29:12 | 4 | ||||||
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forestmodel Resource Report Resource Website 1+ mentions |
forestmodel (RRID:SCR_025250) | software toolkit, source code, software resource | Software R package that produces forest plots using 'ggplot2' from models produced by functions such as stats::lm(), stats::glm() and survival::coxph(). | forest plots, | uses: ggplot2 | Free, Available for download, Freely available | SCR_025250 | 2026-08-14 09:28:58 | 5 | ||||||||||
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POLCAM-Live Resource Report Resource Website 1+ mentions |
POLCAM-Live (RRID:SCR_025342) | image processing software, data processing software, software application, software resource, source code | Software for live processing of polarisation camera images. | live processing, polarisation camera images, | Free, Available for download, Freely available | SCR_025342 | 2026-08-14 09:29:13 | 1 |
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