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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ArrayExpress Resource Report Resource Website 5000+ mentions |
ArrayExpress (RRID:SCR_002964) | ArrayExpress | catalog, data or information resource, data repository, database, service resource, storage service resource | International functional genomics data collection generated from microarray or next-generation sequencing (NGS) platforms. Repository of functional genomics data supporting publications. Provides genes expression data for reuse to the research community where they can be queried and downloaded. Integrated with the Gene Expression Atlas and the sequence databases at the European Bioinformatics Institute. Contains a subset of curated and re-annotated Archive data which can be queried for individual gene expression under different biological conditions across experiments. Data collected to MIAME and MINSEQE standards. Data are submitted by users or are imported directly from the NCBI Gene Expression Omnibus. | gold, standard, functional, genomics, data, collection, microarray, next, generation, sequencing, NGS, repository |
uses: MIAME uses: MINSEQE uses: Gene Expression Omnibus is used by: NIF Data Federation is used by: BioSample Database at EBI is used by: Integrated Datasets is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: DataCite is listed by: OMICtools is listed by: re3data.org is related to: DDBJ Omics Archive is related to: MIAME is related to: Gene Expression Atlas is related to: Experimental Factor Ontology is related to: Bgee: dataBase for Gene Expression Evolution is related to: ISA Infrastructure for Managing Experimental Metadata is related to: FlyMine is related to: MAGE-TAB is related to: Experimental Factor Ontology is related to: Magic is related to: ArrayExpress (R) is related to: CancerMIRNome has parent organization: European Bioinformatics Institute |
European Commission ; European Union ; Gen2Phen 200754; NHGRI P41 HG003619; SLING 226073 |
PMID:23193272 PMID:21071405 |
Available Public or Private, Free, Available for download, The community can contribute to this resource, Acknowledgement requested, to access private data registration required | OMICS_01023, nif-0000-30123, r3d100010222 | http://www.ebi.ac.uk/microarray-as/ae, https://doi.org/10.17616/R3302G | SCR_002964 | , ArrayExpress, ArrayExpress - functional genomics data, ArrayExpress Archive | 2026-09-19 12:50:09 | 7814 | ||||
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General Clinical Research Centers Program Resource Report Resource Website 10+ mentions |
General Clinical Research Centers Program (RRID:SCR_002847) | GCRC | funding resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 16, 2013. Through the General Clinical Research Centers (GCRC) program, NCRR funds a national network that provides settings for medical investigators to conduct safe, controlled, state-of-the-art, in-patient and out-patient studies of both children and adults. GCRCs also provide infrastructure and resources that support several career development opportunities. | clinical research program, career development |
has parent organization: National Center for Research Resources has parent organization: National Institutes of Health |
NCRR | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-25308 | SCR_002847 | General Clinical Research Centers, General Clinical Research Centers (GCRC) | 2026-09-19 12:50:06 | 35 | ||||||
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OBD-PKB Interface Resource Report Resource Website 1+ mentions |
OBD-PKB Interface (RRID:SCR_002882) | controlled vocabulary, data or information resource, ontology | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. This interface is for exploring data collected as part of the NIF Neurodegenerative Disease Ontology project. Not generally intended for public consumption yet, but people are welcome to look - large caveat emptor applies. Sponsors: This resource is part of the NIF project. | data, disease, neurodegenerative, software | has parent organization: University of California at Berkeley; Berkeley; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-25570 | SCR_002882 | OBD-PKB Interface | 2026-09-19 12:50:07 | 1 | ||||||||
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CVXOPT - Python Software for Convex Optimization Resource Report Resource Website 1+ mentions |
CVXOPT - Python Software for Convex Optimization (RRID:SCR_002918) | CVXOPT | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 4,2023.Software package for convex optimization based on the Python programming language. It can be used with the interactive Python interpreter, on the command line by executing Python scripts, or integrated in other software via Python extension modules. Its main purpose is to make the development of software for convex optimization applications straightforward by building on Pythons extensive standard library and on the strengths of Python as a high-level programming language. Current version includes the following features: * efficient Python classes for dense and sparse matrices (real and complex), with Python indexing and slicing and overloaded operations for matrix arithmetic * an interface to most of the double-precision real and complex BLAS * an interface to LAPACK routines for solving linear equations and least-squares problems, matrix factorizations (LU, Cholesky, LDLT and QR), symmetric eigenvalue and singular value decomposition, and Schur factorization * an interface to the fast Fourier transform routines from FFTW * interfaces to the sparse LU and Cholesky solvers from UMFPACK and CHOLMOD * routines for linear, second-order cone, and semidefinite programming problems * routines for nonlinear convex optimization * interfaces to the linear programming solver in GLPK, the semidefinite programming solver in DSDP5, and the linear, quadratic and second-order cone programming solvers in MOSEK * a modeling tool for specifying convex piecewise-linear optimization problems. A platform-independent source package and a binary Windows installer are available from the Download section. CVXOPT is also available precompiled for the major platforms: * Debian Linux * Ubuntu Linux * Fedora Linux * Python(x,y) for Microsoft Windows CVXOPT is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY. | convex optimization, python | has parent organization: University of California at Los Angeles; California; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30018 | SCR_002918 | CVXOPT - Python Software for Convex Optimization | 2026-09-19 12:50:08 | 2 | |||||||
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Computational Biology Center Resource Report Resource Website 50+ mentions |
Computational Biology Center (RRID:SCR_002877) | data or information resource, disease-related portal, portal, topical portal, training resource | Computational biology research at Memorial Sloan-Kettering Cancer Center (MSKCC) pursues computational biology research projects and the development of bioinformatics resources in the areas of: sequence-structure analysis; gene regulation; molecular pathways and networks, and diagnostic and prognostic indicators. The mission of cBio is to move the theoretical methods and genome-scale data resources of computational biology into everyday laboratory practice and use, and is reflected in the organization of cBio into research and service components ~ the intention being that new computational methods created through the process of scientific inquiry should be generalized and supported as open-source and shared community resources. Faculty from cBio participate in graduate training provided through the following graduate programs: * Gerstner Sloan-Kettering Graduate School of Biomedical Sciences * Graduate Training Program in Computational Biology and Medicine Integral to much of the research and service work performed by cBio is the creation and use of software tools and data resources. The tools that we have created and utilize provide evidence of our involvement in the following areas: * Cancer Genomics * Data Repositories * iPhone & iPod Touch * microRNAs * Pathways * Protein Function * Text Analysis * Transcription Profiling | drug, evolution, experiment, gene, algorithm, bioinformatics, biology, cancer, clinical, computational, diagnostic, genome, human, initiation, kinetics, laboratory, leukemia, ligand, metastasis, microrna, mirna, model, molecular, network, pathway, phenotype, prognostic, progression, protein, regulation, research, resistance, rna, sequence, stem cell, structure, t cell, therapy, treatment, tumor | is parent organization of: TMBETA-GENOME- Annotation of Beta-Barrel Membrane Proteins in Genomic Sequences | Free, Freely available | nif-0000-25560 | SCR_002877 | cBio | 2026-09-19 12:50:07 | 71 | ||||||||
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Brazilian Ministry of Science Technology and Innovation Resource Report Resource Website 1+ mentions |
Brazilian Ministry of Science Technology and Innovation (RRID:SCR_002876) | MCTI, MCT | government granting agency | is parent organization of: National Laboratory for Scientific Computing; Rio de Janeiro; Brazil | SCR_002876 | Tecnologia e Inovação, Ministry of Science Technology and Innovation (Brazil), Ministério da Ciência, Ministério da Ciência e Tecnologia - Brazil, Ministry of Science and Technology (Brazil) | 2026-09-19 12:50:11 | 8 | |||||||||||
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International Spinal Cord Society Resource Report Resource Website 10+ mentions |
International Spinal Cord Society (RRID:SCR_002908) | data or information resource, portal, topical portal | ISCoS promotes the highest standard of care in the practice of spinal cord injury for men, women and children throughout the world. Through its medical and multi disciplinary team of Professionals ISCoS endeavours to foster education, research and clinical excellence. ISCoS has a membership of over 1,000 Clinicians and Scientists from 87 countries. They regularly update their knowledge at the Annual Scientific Meeting held in a different country each year. Goals of ISCoS: :- Serve as an international impartial, non-political and non-profit making association whose purpose is to study all problems relating to traumatic and non-traumatic lesions of the spinal cord. This includes causes, prevention, basic and clinical research, medical and surgical management, clinical practice, education, rehabilitation and social reintegration. This society will function in close collaboration with other national and international bodies, thereby encouraging the most efficient use of available resources. :- Provide a scientific exchange among its members and others by collecting and disseminating information through publications, correspondence, exhibits, regional and international seminars, symposia, conferences and otherwise. :- Advise, encourage, promote and when requested, assist in efforts to co-ordinate or guide research, development and evaluation activities related to spinal cord lesions throughout the world. :- Advise, encourage, guide and support the efforts of those responsible for the care of patients involved and when requested, correlate these activities throughout the world. :- Advise, encourage, guide and support the efforts of those responsible for the education and training of medical professionals and professionals allied to medicine and when requested, correlate these activities throughout the world. | education, clinical, medical, rehabitation, research, society, spinal cord, surgical | nif-0000-30009 | SCR_002908 | ISCoS | 2026-09-19 12:50:07 | 20 | ||||||||||
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Lowes Syndrome Mutation Database Resource Report Resource Website 1+ mentions |
Lowes Syndrome Mutation Database (RRID:SCR_002907) | data or information resource, data repository, database, service resource, storage service resource | The Lowe Syndrome Mutation Database is now being maintained by the National Center for Biotechnology Information (NCBI) at the National Institutes of Health. A database of mutations causing Lowe syndrome. Information on new mutations may be submitted online. Lowe oculocerebrorenal syndrome is an X-linked disorder caused by mutations in the OCRL1 gene, which encodes a 105-kDa Golgi protein with phosphatidylinositol (4,5) bisphosphate 5-phosphatase activity. genetics | mutation | has parent organization: NCBI | Lowe syndrome | NHGRI | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00155 | http://research.nhgri.nih.gov/lowe/ | SCR_002907 | Lowe Syndrome Mutation Database | 2026-09-19 12:50:07 | 1 | |||||
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British Heart Foundation Resource Report Resource Website 100+ mentions |
British Heart Foundation (RRID:SCR_002905) | BHF | institution | British charity and fundraiser for cardiovascular research. | cardiovascular research, coronary heart disease, fundraising | Crossref funder ID: 501100000274, ISNI: 0000 0001 0540 7035, nlx_82345, grid.452924.c, Wikidata: Q4970039 | https://ror.org/02wdwnk04 | SCR_002905 | 2026-09-19 12:50:12 | 155 | |||||||||
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Tuschl Laboratory: RNA Molecular Biology Resource Report Resource Website 1+ mentions |
Tuschl Laboratory: RNA Molecular Biology (RRID:SCR_002866) | data or information resource, laboratory portal, organization portal, portal | RNA is not only a carrier of genetic information, but also a catalyst and a guide for sequence-specific recognition and processing of other RNA molecules. This lab investigates the regulatory mechanisms of RNA interference, RNA-mediated translational control, and nuclear pre-mRNA splicing. Classical and combinatorial biochemical techniques are used to analyze the function of the RNA- and protein-components involved in those processes. | genetics, biochemical, biology, catalyst, mechanism, mirna, molecule, process., protein, regulation, rna, sequence, sirna, technique | has parent organization: Rockefeller University; New York; USA | Free, Freely available | nif-0000-25546 | http://www.rockefeller.edu/labheads/tuschl/sirna.html | SCR_002866 | Tuschl Lbaoratory | 2026-09-19 12:50:07 | 5 | |||||||
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University of Cologne; Cologne; Germany Resource Report Resource Website 1+ mentions |
University of Cologne; Cologne; Germany (RRID:SCR_002903) | UoC | university | Public university in Germany that offers degrees in law, management and business, the arts and humanities, and human sciences. | public university, germany, degree program |
is parent organization of: TargetCaller is parent organization of: CGARS is parent organization of: ARAMEMNON, a Novel Database for Arabidopsis Integral Membrane Proteins is parent organization of: Dictyostelium discoideum genome database is parent organization of: Gentle is parent organization of: Dictyostelium discoideum genome database is parent organization of: University of Cologne Center for Genomics (CCG) Core Facility |
grid.6190.e, ISNI:0000 0000 8580 3777, Wikidata:Q54096, nlx_14953 | https://ror.org/00rcxh774 | http://www.portal.uni-koeln.de/uoc_home.html?&L=1 | SCR_002903 | University of Cologne, Universitat zu Koln | 2026-09-19 12:50:07 | 2 | ||||||
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Patterns of Gene Expression in Drosophila Embryogenesis Resource Report Resource Website 50+ mentions |
Patterns of Gene Expression in Drosophila Embryogenesis (RRID:SCR_002868) | BDGP insitu | data or information resource, database, image collection, software resource, source code | Database of embryonic expression patterns using a high throughput RNA in situ hybridization of the protein-coding genes identified in the Drosophila melanogaster genome with images and controlled vocabulary annotations. At the end of production pipeline gene expression patterns are documented by taking a large number of digital images of individual embryos. The quality and identity of the captured image data are verified by independently derived microarray time-course analysis of gene expression using Affymetrix GeneChip technology. Gene expression patterns are annotated with controlled vocabulary for developmental anatomy of Drosophila embryogenesis. Image, microarray and annotation data are stored in a modified version of Gene Ontology database and the entire dataset is available on the web in browsable and searchable form or MySQL dump can be downloaded. So far, they have examined expression of 7507 genes and documented them with 111184 digital photographs. | embryo, embryogenesis, gene, anatomy, microarray, pattern, protocol, rna, gene expression, expression pattern, embryonic drosophila, in situ hybridization, annotation, est, FASEB list |
is related to: Gene Ontology has parent organization: Berkeley Drosophila Genome Project |
Howard Hughes Medical Institute ; NIH ; NIGMS R01 GM076655; NHGRI HG00750; NHGRI P41 HG00739 |
PMID:17645804 PMID:12537577 |
Free, Freely available, Available for download | nif-0000-25550, r3d100011327 | https://doi.org/10.17616/R32H0K | http://www.fruitfly.org/cgi-bin/ex/insitu.pl | SCR_002868 | BDGP Embryonic Expression Patterns | 2026-09-19 12:50:07 | 64 | |||
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CNVassoc Resource Report Resource Website 1+ mentions |
CNVassoc (RRID:SCR_002901) | software resource | Software package that carries out association analysis of common copy number variants in population-based studies. It includes functions for analysing association under a series of study designs (case-control, cohort, etc), using several dependent variables (class status, censored data, counts) as response, adjusting for covariates and considering various inheritance models. It also includes functions for inferring copy number (CNV genotype calling). Various classes and methods for generic functions (print, summary, plot, anova, ... ) have been created to facilitate the analysis. | standalone software, mac os x, unix/linux, windows, r |
is listed by: OMICtools has parent organization: CRAN |
PMID:21609482 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_02609 | SCR_002901 | CNVassoc: Association analysis of CNV data | 2026-09-19 12:50:07 | 1 | |||||||
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Magnaporthe comparative Database Resource Report Resource Website 10+ mentions |
Magnaporthe comparative Database (RRID:SCR_003079) | Broad MGG | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae. It provides users the tools to BLAST search, browse genome regions (to retrieve DNA, find clones, and graphically view sequence regions), and provides gene indexes and genome statistics. We were funded to attempt 7x sequence coverage comprising paired end reads from plasmids, Fosmids and BACs. Our strategy involves Whole Genome Shotgun (WGS) sequencing, in which sequence from the entire genome is generated and reassembled. Our specific aims are as follows: 1. Generate and assemble sequence reads yielding 7X coverage of the Magnaporthe oryzae genome through whole genome shotgun sequencing. 2. Generate and incorporate BAC and Fosmid end sequences into the genome assembly to provide a paired-end of average every 2 kb. 3. Integrate the genome sequence with existing physical and genetic map information. 4. Perform automated annotation of the sequence assembly. 5. Distribute the sequence assembly and results of our annotation and analysis through a freely accessible, public web server and by deposition of the sequence assembly in GenBank. | genome, gene, sequencing, magnaporthe, m. grisea genome, m. oryzae |
has parent organization: Broad Institute has parent organization: Harvard University; Cambridge; United States has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
USDA ; NSF |
Free, Freely available | nif-0000-03095 | http://www.broad.mit.edu/annotation/genome/magnaporthe_grisea/Home.html | SCR_003079 | M. oryzae Database, Magnaporthe comparative genomics database | 2026-09-19 12:50:11 | 10 | |||||
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studyforrest.org Resource Report Resource Website 10+ mentions |
studyforrest.org (RRID:SCR_003112) | studyforrest.org | data repository, image repository, service resource, storage service resource | An MRI data repository that holds a set of 7 Tesla images and behavioral metadata. Multi-faceted brain image archive with behavioral measurements. For each participant a number of different scans and auxiliary recordings have been obtained. In addition, several types of minimally preprocessed data are also provided. The full description of the data release is available in a dedicated publication. This project invites anyone to participate in a decentralized effort to explore the opportunities of open science in neuroimaging by documenting how much (scientific) value can be generated out of a single data release by publication of scientific findings derived from a dataset, algorithms and methods evaluated on this dataset, and/or extensions of this dataset by acquisition and integration of new data. | neuroimaging, open data, brain, brain scan, fmri, stimulus material, participant demographic, stimulus, demographic, experimental protocol, structure mri, mri, 7-tesla, data set, auditory system, language, perception |
uses: OpenNeuro uses: rsync uses: XNAT - The Extensible Neuroimaging Archive Toolkit is used by: NIF Data Federation is listed by: NITRC-IR is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Otto-von-Guericke University Magdeburg; Saxony-Anhalt; Germany |
BMBF 01GQ1112; BMBF 01GQ1411; NSF 1129855; DFG PO 548/15-1 |
Free, Available for download, Freely available | r3d100011071, nlx_156710 | http://www.nitrc.org/projects/studyforrest, https://doi.org/10.17616/R3SW5S | SCR_003112 | study forrest, studyforrest | 2026-09-19 12:50:12 | 36 | |||||
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SciCrunch Resource Report Resource Website 10+ mentions |
SciCrunch (RRID:SCR_003115) | SciCrunch | community building portal, data or information resource, database, portal | Community portal for researchers and content management system for data and databases. Intended to provide common source of data to research community and data about Research Resource Identifiers (RRIDs), which can be used in scientific publications. Central service where RRIDs can be searched and created. Designed to help communities of researchers create their own portals to provide access to resources, databases and tools of relevance to their research areas. Adds value to existing scientific resources by increasing their discoverability, accessibility, visibility, utility and interoperability, regardless of their current design or capabilities and without need for extensive redesign of their components or information models. Resources can be searched and discovered at multiple levels of integration, from superficial discovery based on limited description of resource at SciCrunch Registry, to deep content query at SciCrunch Data Federation. | Data sharing, community, data, RRID, portal, data discovery, data accessibility, data visibility, data interoperability, scientific publication data, data access |
uses: NIF Data Federation uses: SciBot uses: SciGraph is used by: SPARC Portal is related to: Neuroscience Information Framework is related to: SciScore is related to: SciBot is related to: SPARC Anatomy Working Group is related to: PRECISE Traumatic Brain Injury Model Catalog has parent organization: University of California at San Diego; California; USA is parent organization of: Aging Portal is parent organization of: NIDDK Information Network (dkNET) is parent organization of: Resource Identification Portal is parent organization of: Integrated Datasets is parent organization of: Integrated is parent organization of: InterLex |
Free, Freely available | nlx_156715 | SCR_003115 | 2026-09-19 12:50:12 | 19 | ||||||||
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University of Colorado Boulder; Colorado; USA Resource Report Resource Website 1+ mentions |
University of Colorado Boulder; Colorado; USA (RRID:SCR_003114) | university | Public university that offers degrees in the sciences, humanities, and social sciences. | university, research university, public university, colorado, degree |
is related to: Beta Cell Biology Consortium is related to: ELOKA has parent organization: University of Colorado; Colorado; USA is parent organization of: University of Colorado at Boulder Labs and Facilities is parent organization of: Community Surface Dynamics Modeling System is parent organization of: National Snow and Ice Data Center is parent organization of: IMOD is parent organization of: University of Colorado at Boulder, Department of Neuroscience is parent organization of: NeuraLinksPlus is parent organization of: Emergent is parent organization of: Standalone hamming is parent organization of: CU Boulder Electron Microprobe Laboratory is parent organization of: CU Boulder Institute for Behavioral Genetics is parent organization of: SeqTrace is parent organization of: QIIME is parent organization of: Colorado University at Boulder Shared Instrumentation in Nanofabrication and Characterization Core Facility is parent organization of: Colorado University at Boulder JILA Keck Lab and Fabrication Core Facility is parent organization of: Colorado University at Boulder Biochemistry Shared Instruments Pool Core Facility is parent organization of: Colorado University at Boulder Center for Infrastructure, Energy, and Space Testing Core Facility is parent organization of: Colorado University at Boulder Light Microscopy Core Facility is parent organization of: Colorado University at Boulder EM Services Core Facility is parent organization of: Colorado University at Boulder Green Labs Core Facility is parent organization of: Colorado University at Boulder Central Analytical Mass Spectrometry Core Facility is parent organization of: Colorado University at Boulder Intermountain Neuroimaging Consortium Core Facility is parent organization of: Colorado University at Boulder Green Labs Core Facility is parent organization of: Colorado University at Boulder BioChemistry Krios Electron Microscopy Core Facility is parent organization of: University of Colorado Boulder Chemical and Bio. Engineering instrument and electronics Core Facility is parent organization of: University of Colorado Boulder High Performance Computing PetaLibrary Core Facility is parent organization of: University of Colorado Boulder Earth Systems Stable Isotope Lab Core Facility is parent organization of: University of Colorado Boulder Organic Geochemistry Laboratory Core Facility is parent organization of: University of Colorado Boulder BioCore Core Facility is parent organization of: University of Colorado Boulder CU Thermochronology Research and Instrumentation Lab Core Facility is parent organization of: Colorado University at Boulder Soft Materials Research Center X-Ray Diffraction Facility Core Facility is parent organization of: University of Colorado Boulder Raman Microspectroscopy Lab Core Facility is parent organization of: Colorado University at Boulder Facility for Electron Microscopy of Materials Core Facility is parent organization of: Colorado University at Boulder Materials Instrumentation and Multimodal Imaging Core Facility is parent organization of: Colorado University at Boulder BioFrontiers Next-Gen Sequencing Facility Core Facility is parent organization of: Colorado University at Boulder Flow Cytometry Shared Core Facility is parent organization of: Colorado University at Boulder Macromolecular X-ray Crystallography Core Facility is parent organization of: University of Colorado Anschutz Medical Campus ImmunoMicro Flow Cytometry Core Facility is parent organization of: Colorado University at Boulder High Throughput Screening Core Facility is parent organization of: University of Colorado Boulder Polymeric and Optical Materials Characterization Shared Core Facility is parent organization of: SHARCQ is parent organization of: University of Colorado Boulder Geomicrobiology Lab Core Facility is parent organization of: University of Colorado Boulder Intermountain Neuroimaging Consortium Core Facility is parent organization of: University of Colorado Boulder Biochemistry Nuclear Magnetic Resonance Core Facility |
Free, Freely available | nlx_10266 | https://ror.org/02ttsq026 | SCR_003114 | CU Boulder, UC Boulder, University of Colorado Boulder, CU-Boulder | 2026-09-19 12:50:12 | 3 | |||||||
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SURPI Resource Report Resource Website 10+ mentions |
SURPI (RRID:SCR_003071) | SURPI | software resource | Software providing a computational pipeline for pathogen identification from complex metagenomic next-generation sequencing (NGS) data generated from clinical samples. | pipeline, cloud based pipeline, pathogen identification |
is listed by: OMICtools has parent organization: University of California at San Francisco; California; USA |
PMID:24899342 | OMICS_04623 | https://github.com/chiulab/surpi | SCR_003071 | Sequence-based Ultra-Rapid Pathogen Identification | 2026-09-19 12:50:11 | 13 | ||||||
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flytrap Resource Report Resource Website 10+ mentions |
flytrap (RRID:SCR_003075) | Flytrap | data or information resource, database, image, video resource | Flytrap is an interactive database for displaying gene expression patterns, in particular P(GAL4) patterns, via an intuitive WWW based interface. This development consists of two components, the first being the HTML interface to the database and the second, a tool-kit for constructing and maintaining the database. The browser component of the project is entirely platform independent; based on javascript and HTML and therefore only requires a "standard" browser. This is to facilitate CD-ROM distribution and off-line browsing. Whether on-line or on CD, the basic browser structure does not reply on any server based scripts. Basic searching is now available. The search page uses javascript and will work off-line (i.e. from a CD-ROM copy). The construction tool-kit is UNIX based and requires an on-line web server. The tool-kit is used to compile the HTML browser interface from a simple database. The tool-kit part comprises a forms based HTML interface to the datasets allowing new information to b e added and updated very simply. We are also developing a java interface for the tool-kit that will enable us to edit and annotate images on-line. The basic browser interface is complete and a demonstration version can be accessed via the website. The first working version of the tool-kit is now on-line and is available for use. | brain, genetics, 3d model, expression pattern, anatomy, anatomical structure, cell, gene expression, brain function, neuroimaging, FASEB list | has parent organization: University of Edinburgh; Scotland; United Kingdom | BBSRC ; EPSRC |
PMID:14681446 | Free, Freely available | nif-0000-00051, r3d100011203 | https://doi.org/10.17616/R3VD0P | SCR_003075 | 2026-09-19 12:50:11 | 48 | |||||
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Cancer Genome Anatomy Project Resource Report Resource Website 100+ mentions |
Cancer Genome Anatomy Project (RRID:SCR_003072) | CGAP | data or information resource, portal, topical portal | Project to determine the gene expression profiles of normal, precancer, and cancer cells, whose generated resources are available to the cancer community. Interconnected modules provide access to all CGAP data, bioinformatic analysis tools, and biological resources allowing the user to find in silico answers to biological questions in a fraction of the time it once took in the laboratory. * Genes * Tissues * Pathways * RNAi * Chromosomes * SAGE Genie * Tools | gene, gene expression, normal cell, precancer cell, cancer cell, cell, genome, anatomy, gene expression profile, tissue, pathway, rnai, chromosome, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: National Cancer Institute is parent organization of: CGAP GO Browser |
Cancer, Normal, Precancer | NCI | Free, download Freely available | biotools:cgap, nif-0000-30468 | https://mitelmandatabase.isb-cgc.org/mb_search | SCR_003072 | Cancer Genome Anatomy Project (CGAP) | 2026-09-19 12:50:11 | 108 |
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